diff --git a/hPDB-examples.cabal b/hPDB-examples.cabal --- a/hPDB-examples.cabal +++ b/hPDB-examples.cabal @@ -1,5 +1,5 @@ name: hPDB-examples -version: 1.2.0.7 +version: 1.2.0.8 synopsis: Examples for hPDB library stability: stable homepage: https://github.com/BioHaskell/hPDB-examples @@ -16,7 +16,7 @@ build-type: Simple cabal-version: >=1.8 -tested-with: GHC==7.0.3, GHC==7.2.2, GHC==7.4.1, GHC==7.4.2, GHC==7.6.1, GHC==7.6.2, GHC==7.6.3 +tested-with: GHC==7.4.2, GHC==7.6.3, GHC==7.8.4,GHC==7.10.3,GHC==8.0.1,GHC==8.2.2 --data-files: 1CRN.pdb, 1HTQ.pdb, 3JYV.pdb extra-source-files: README.md INSTALL AUTHORS @@ -27,42 +27,42 @@ Executable PDB2Fasta main-is: examples/PDB2Fasta.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - build-depends: base>=4.0, base <4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=3.0 + build-depends: base>=4.0, base <4.11, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=3.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash Executable ShiftToCenter main-is: examples/ShiftToCenter.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - build-depends: base>=4.0, base<4.10, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, bytestring, iterable >=1.0 + build-depends: base>=4.0, base<4.11, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, bytestring, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash Executable CleanPDB main-is: examples/CleanPDB.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - build-depends: base>=4.0, base <4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 + build-depends: base>=4.0, base <4.11, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash Executable SplitModels main-is: examples/SplitModels.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - build-depends: base>=4.0, base <4.10, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, bytestring, iterable >=1.0 + build-depends: base>=4.0, base <4.11, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, bytestring, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash Executable CanonicalAxes main-is: examples/CanonicalAxes.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-depends: base>=4.0, base <4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 + Build-depends: base>=4.0, base <4.11, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash Executable PrintEvents Main-is: tests/PrintEvents.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-depends: base>=4.0, base <4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 + Build-depends: base>=4.0, base <4.11, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls Executable PrintStructureObject ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-depends: base>=4.0, base <4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 + Build-depends: base>=4.0, base <4.11, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 Main-is: tests/PrintStructureObject.hs other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls @@ -72,26 +72,26 @@ -fsimpl-tick-factor=150 -- ^ To avoid difficulties with GHC 7.10.1: -- https://ghc.haskell.org/trac/ghc/ticket/10565 - Build-depends: base>=4.0, base <4.10, ghc-prim, bytestring, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 + Build-depends: base>=4.0, base <4.11, ghc-prim, bytestring, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls Executable StericClashCheck main-is: examples/StericClashCheck.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-Depends: base>=4.0, base<4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, Octree >= 0.5, QuickCheck, text, text-format, hPDB >= 1.2, iterable >=1.0 + Build-Depends: base>=4.0, base<4.11, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, Octree >= 0.5, QuickCheck, text, text-format, hPDB >= 1.2, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls -- if flag(haveOpenGL) -- why can't we make it conditionally available? Executable Viewer main-is: examples/Viewer.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-depends: base>=4.0, base <4.10, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, OpenGL, GLUT, hPDB >= 1.2, bytestring, iterable >=1.0 + Build-depends: base>=4.0, base <4.11, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, OpenGL, GLUT, hPDB >= 1.2, bytestring, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash test-suite ParserPerformance main-is: tests/TestParser.hs type: exitcode-stdio-1.0 ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts "-with-rtsopts=-N -t" - Build-depends: base>=4.0, base <4.10, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, text>=0.11.1.13, hPDB >= 1.2, bytestring, iterable >=1.0, IfElse >= 0.80, process >= 1.0, time >= 1.2 + Build-depends: base>=4.0, base <4.11, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, text>=0.11.1.13, hPDB >= 1.2, bytestring, iterable >=1.0, IfElse >= 0.80, process >= 1.0, time >= 1.2 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash