diff --git a/hPDB-examples.cabal b/hPDB-examples.cabal --- a/hPDB-examples.cabal +++ b/hPDB-examples.cabal @@ -1,5 +1,5 @@ name: hPDB-examples -version: 1.2.0.2 +version: 1.2.0.6 synopsis: Examples for hPDB library stability: stable homepage: https://github.com/BioHaskell/hPDB-examples @@ -27,68 +27,68 @@ Executable PDB2Fasta main-is: examples/PDB2Fasta.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - build-depends: base>=4.0, base <4.9, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=3.0 + build-depends: base>=4.0, base <4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=3.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash Executable ShiftToCenter main-is: examples/ShiftToCenter.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - build-depends: base>=4.0, base<4.9, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.999, bytestring, iterable >=1.0 + build-depends: base>=4.0, base<4.10, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, bytestring, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash Executable CleanPDB main-is: examples/CleanPDB.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - build-depends: base>=4.0, base <4.9, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.999, iterable >=1.0 + build-depends: base>=4.0, base <4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash Executable SplitModels main-is: examples/SplitModels.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - build-depends: base>=4.0, base <4.9, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.999, bytestring, iterable >=1.0 + build-depends: base>=4.0, base <4.10, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, bytestring, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash Executable CanonicalAxes main-is: examples/CanonicalAxes.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-depends: base>=4.0, base <4.9, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.999, iterable >=1.0 + Build-depends: base>=4.0, base <4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash Executable PrintEvents Main-is: tests/PrintEvents.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-depends: base>=4.0, base <4.9, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.999, iterable >=1.0 + Build-depends: base>=4.0, base <4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls Executable PrintStructureObject ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-depends: base>=4.0, base <4.9, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.999, iterable >=1.0 + Build-depends: base>=4.0, base <4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 Main-is: tests/PrintStructureObject.hs other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls Executable Rg main-is: examples/Rg.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-depends: base>=4.0, base <4.9, ghc-prim, bytestring, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 0.999, iterable >=1.0 + Build-depends: base>=4.0, base <4.10, ghc-prim, bytestring, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.2, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls Executable StericClashCheck main-is: examples/StericClashCheck.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-Depends: base>=4.0, base<4.9, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, Octree >= 0.5, QuickCheck, text, text-format, hPDB >= 0.999, iterable >=1.0 + Build-Depends: base>=4.0, base<4.10, bytestring, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, Octree >= 0.5, QuickCheck, text, text-format, hPDB >= 1.2, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls -- if flag(haveOpenGL) -- why can't we make it conditionally available? Executable Viewer main-is: examples/Viewer.hs ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N - Build-depends: base>=4.0, base <4.9, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, OpenGL, GLUT, hPDB >= 0.999, bytestring, iterable >=1.0 + Build-depends: base>=4.0, base <4.10, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, OpenGL, GLUT, hPDB >= 1.2, bytestring, iterable >=1.0 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash test-suite ParserPerformance main-is: tests/TestParser.hs type: exitcode-stdio-1.0 ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts "-with-rtsopts=-N -t" - Build-depends: base>=4.0, base <4.9, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, text>=0.11.1.13, hPDB >= 0.999, bytestring, iterable >=1.0, IfElse >= 0.80, process >= 1.0, time >= 1.2 + Build-depends: base>=4.0, base <4.10, ghc-prim, directory, mtl, template-haskell, vector, AC-Vector, containers, deepseq, text>=0.11.1.13, hPDB >= 1.2, bytestring, iterable >=1.0, IfElse >= 0.80, process >= 1.0, time >= 1.2 other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash