find-clumpiness 0.2.3.1 → 0.2.3.2

raw patch · 2 files changed

+63/−59 lines, 2 filesdep ~BiobaseNewickdep ~aesondep ~basePVP: major bump suggested

API removals or changes: PVP suggests a major version bump

Dependency ranges changed: BiobaseNewick, aeson, base, bytestring, clumpiness, containers, hierarchical-clustering, listsafe, mtl, optparse-applicative, text, text-show, tree-fun, unordered-containers, vector

API changes (from Hackage documentation)

Files

• app/Main.hs +3/−2
• find-clumpiness.cabal +60/−57

@@ -63,8 +63,9 @@                  \ using the data.tree and jsonlite libraries,\                  \ where \"dendrogram\" is a dendrogram object in R.\                  \ The format for Haskell STRING is one of\-                 \ \"Tree NodeLabel\" (BaseFormat) from this library or\-                 \ \"Tree (Seq Text)\" (TreeFormat).\+                 \ \"Tree NodeLabel\" (BaseFormat) from this library,\+                 \ \"Tree (Seq Text)\" (TreeFormat), or\+                 \ \"Dendrogram (Seq Text)\" (DendrogramFormat).\                  \ The Lineage format needs an additional field to\                  \ specify what to use as the label\                  \ (for instance, Lineage tissues).\

@@ -1,61 +1,64 @@-name:                find-clumpiness-version:             0.2.3.1-synopsis:            Find the clumpiness of labels in a tree-description:         Use a clumpiness measure to find the aggregation relationship between labels inside of a tree.-homepage:            http://github.com/GregorySchwartz/find-clumpiness#readme-license:             GPL-3-license-file:        LICENSE-author:              Gregory W. Schwartz-maintainer:          gsch@mail.med.upenn.edu-copyright:           Copyright 2017 Gregory W. Schwartz-category:            Math-build-type:          Simple--- extra-source-files:-cabal-version:       >=1.10+cabal-version: >=1.10+name: find-clumpiness+version: 0.2.3.2+license: GPL-3+license-file: LICENSE+copyright: Copyright 2018 Gregory W. Schwartz+maintainer: gsch@pennmedicine.upenn.edu+author: Gregory W. Schwartz+homepage: http://github.com/GregorySchwartz/find-clumpiness#readme+synopsis: Find the clumpiness of labels in a tree+description:+    Use a clumpiness measure to find the aggregation relationship between labels inside of a tree.+category: Math+build-type: Simple +source-repository head+    type: git+    location: https://github.com/GregorySchwartz/find-clumpiness+ library-  hs-source-dirs:      src-  exposed-modules:     Types-                     , Utility-                     , NewickConvert-                     , RJSONConvert-                     , LineageConvert-                     , TreeTransform-                     , Clumpiness-                     , Print-  build-depends:       base >= 4.7 && < 5-                     , BiobaseNewick-                     , aeson-                     , bytestring-                     , clumpiness-                     , containers-                     , hierarchical-clustering-                     , listsafe-                     , mtl-                     , text-                     , text-show-                     , tree-fun-                     , unordered-containers-                     , vector-  default-language:    Haskell2010+    exposed-modules:+        Types+        Utility+        NewickConvert+        RJSONConvert+        LineageConvert+        TreeTransform+        Clumpiness+        Print+    hs-source-dirs: src+    default-language: Haskell2010+    build-depends:+        base >=4.7 && <5,+        BiobaseNewick >=0.0.0.2,+        aeson >=1.2.2.0,+        bytestring >=0.10.8.2,+        clumpiness >=0.17.0.0,+        containers >=0.5.10.2,+        hierarchical-clustering >=0.4.6,+        listsafe >=0.1.0.1,+        mtl >=2.2.1,+        text >=1.2.2.2,+        text-show >=3.6.2,+        tree-fun >=0.8.1.0,+        unordered-containers >=0.2.8.0,+        vector >=0.12.0.1  executable find-clumpiness-  hs-source-dirs:      app-  main-is:             Main.hs-  ghc-options:         -threaded -rtsopts -O2-  build-depends:       base-                     , find-clumpiness-                     , BiobaseNewick-                     , aeson-                     , bytestring-                     , clumpiness-                     , containers-                     , optparse-applicative-                     , text-                     , tree-fun-                     , unordered-containers-  default-language:    Haskell2010--source-repository head-  type:     git-  location: https://github.com/GregorySchwartz/find-clumpiness+    main-is: Main.hs+    hs-source-dirs: app+    default-language: Haskell2010+    ghc-options: -threaded -rtsopts -O2+    build-depends:+        base >=4.10.0.0,+        find-clumpiness -any,+        BiobaseNewick >=0.0.0.2,+        aeson >=1.2.2.0,+        bytestring >=0.10.8.2,+        clumpiness >=0.17.0.0,+        containers >=0.5.10.2,+        optparse-applicative >=0.14.0.0,+        text >=1.2.2.2,+        tree-fun >=0.8.1.0,+        unordered-containers >=0.2.8.0