elynx 0.6.1.0 → 0.6.1.1
raw patch · 3 files changed
+23/−14 lines, 3 files
Files
- ChangeLog.md +7/−0
- README.md +14/−12
- elynx.cabal +2/−2
ChangeLog.md view
@@ -5,6 +5,13 @@ ## Unreleased changes +## Version 0.6.1.1++- Remove plotting functionality (gnuplot incompatible with ghc921).+- Read files strictly.+- Refactor; flatten model hierarchy.++ ## Version 0.6.1.0 - Split `ELynx.Tools` into separate modules because the package will be reduced.
README.md view
@@ -2,7 +2,7 @@ # The ELynx Suite -Version: 0.6.0.0.+Version: 0.6.1.1. Reproducible evolution made easy. <p align="center"><img src="https://travis-ci.org/dschrempf/elynx.svg?branch=master"/></p>@@ -69,15 +69,16 @@ # Get help - cabal exec slynx -- --help+ cabal run slynx -- --help # OR: stack exec slynx -- --help # OR: slynx --help - ELynx Suite version 0.6.0.0.+ Up to date+ ELynx Suite version 0.6.1.1. Developed by Dominik Schrempf.- Compiled on September 4, 2021, at 12:58 pm, UTC.+ Compiled on February 22, 2022, at 15:10 pm, UTC. - Usage: slynx [-v|--verbosity VALUE] [-o|--output-file-basename NAME] + Usage: slynx [-v|--verbosity VALUE] [-o|--output-file-basename NAME] [-f|--force] [--no-elynx-file] COMMAND Analyze, and simulate multi sequence alignments. @@ -138,18 +139,19 @@ The documentation of sub commands can be accessed separately: - cabal exec slynx -- simulate --help+ cabal run slynx -- simulate --help # OR: stack exec slynx -- simulate --help # OR: slynx simulate --help - ELynx Suite version 0.6.0.0.+ Up to date+ ELynx Suite version 0.6.1.1. Developed by Dominik Schrempf.- Compiled on September 4, 2021, at 12:58 pm, UTC.+ Compiled on February 22, 2022, at 15:10 pm, UTC. - Usage: slynx simulate (-t|--tree-file Name) [-s|--substitution-model MODEL] - [-m|--mixture-model MODEL] [-e|--edm-file NAME] - [-p|--siteprofile-files NAMES] - [-w|--mixture-model-weights "[DOUBLE,DOUBLE,...]"] + Usage: slynx simulate (-t|--tree-file Name) [-s|--substitution-model MODEL]+ [-m|--mixture-model MODEL] [-e|--edm-file NAME]+ [-p|--siteprofile-files NAMES]+ [-w|--mixture-model-weights "[DOUBLE,DOUBLE,...]"] [-g|--gamma-rate-heterogeneity "(NCAT,SHAPE)"] (-l|--length NUMBER) [-S|--seed [INT]] Simulate multi sequence alignments.
elynx.cabal view
@@ -1,6 +1,6 @@-cabal-version: 2.2+cabal-version: 3.0 name: elynx-version: 0.6.1.0+version: 0.6.1.1 synopsis: Validate and (optionally) redo ELynx analyses description: Please see the README on GitHub at <https://github.com/dschrempf/elynx>. category: Bioinformatics