elynx-seq 0.7.2.1 → 0.7.2.2
raw patch · 2 files changed
+12/−9 lines, 2 filesPVP ok
version bump matches the API change (PVP)
API changes (from Hackage documentation)
Files
- README.md +11/−8
- elynx-seq.cabal +1/−1
README.md view
@@ -2,7 +2,7 @@ # The ELynx Suite -Version: 0.7.2.0.+Version: 0.7.2.1. Reproducible evolution made easy. <p align="center"><img src="https://travis-ci.org/dschrempf/elynx.svg?branch=master"/></p>@@ -73,9 +73,9 @@ # OR: stack exec slynx -- --help # OR: slynx --help - ELynx Suite version 0.7.2.0.+ ELynx Suite version 0.7.2.1. Developed by Dominik Schrempf.- Compiled on May 3, 2023, at 13:18 pm, UTC.+ Compiled on June 15, 2023, at 19:54 pm, UTC. Usage: slynx [-v|--verbosity VALUE] [-o|--output-file-basename NAME] [-f|--force] [--no-elynx-file] COMMAND@@ -143,17 +143,17 @@ # OR: stack exec slynx -- simulate --help # OR: slynx simulate --help - Up to date- ELynx Suite version 0.7.0.0.+ ELynx Suite version 0.7.2.1. Developed by Dominik Schrempf.- Compiled on July 10, 2022, at 08:48 am, UTC.+ Compiled on June 15, 2023, at 19:54 pm, UTC. Usage: slynx simulate (-t|--tree-file Name) [-s|--substitution-model MODEL]- [-m|--mixture-model MODEL] [-e|--edm-file NAME]- [-p|--siteprofile-files NAMES]+ [-m|--mixture-model MODEL] [-n|--global-normalization]+ [-e|--edm-file NAME] [-p|--siteprofile-files NAMES] [-w|--mixture-model-weights "[DOUBLE,DOUBLE,...]"] [-g|--gamma-rate-heterogeneity "(NCAT,SHAPE)"] (-l|--length NUMBER) [-S|--seed INT]+ Simulate multi sequence alignments. Available options:@@ -166,6 +166,9 @@ option) -m,--mixture-model MODEL Set the phylogenetic mixture model; available models are shown below (mutually exclusive with -s option)+ -n,--global-normalization+ Normalize mixture model globally (one normalization+ constant for all components) -e,--edm-file NAME Empirical distribution model file NAME in Phylobayes format -p,--siteprofile-files NAMES
elynx-seq.cabal view
@@ -1,6 +1,6 @@ cabal-version: 3.0 name: elynx-seq-version: 0.7.2.1+version: 0.7.2.2 synopsis: Handle molecular sequences description: Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on GitHub at <https://github.com/dschrempf/elynx>.