diff --git a/elynx-seq.cabal b/elynx-seq.cabal --- a/elynx-seq.cabal +++ b/elynx-seq.cabal @@ -1,9 +1,9 @@ cabal-version: 2.2 name: elynx-seq -version: 0.5.1.0 +version: 0.5.1.1 license: GPL-3.0-or-later license-file: LICENSE -copyright: Dominik Schrempf (2020) +copyright: Dominik Schrempf (2021) maintainer: dominik.schrempf@gmail.com author: Dominik Schrempf homepage: https://github.com/dschrempf/elynx#readme @@ -64,7 +64,7 @@ bytestring >=0.10.12.0, containers >=0.6.2.1, matrices >=0.5.0, - mwc-random >=0.14.0.0, + mwc-random >=0.15.0.1, parallel >=3.2.2.0, primitive >=0.7.1.0, vector >=0.12.3.0, @@ -90,7 +90,7 @@ base >=4.7 && <5, bytestring >=0.10.12.0, elynx-seq -any, - elynx-tools >=0.5.1.0, + elynx-tools >=0.5.1.1, hspec >=2.7.10, matrices >=0.5.0, vector >=0.12.3.0 diff --git a/src/ELynx/Data/Alphabet/Alphabet.hs b/src/ELynx/Data/Alphabet/Alphabet.hs --- a/src/ELynx/Data/Alphabet/Alphabet.hs +++ b/src/ELynx/Data/Alphabet/Alphabet.hs @@ -3,7 +3,7 @@ -- | -- Module : ELynx.Data.Alphabet.Alphabet -- Description : Alphabets store hereditary information --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Alphabet/Character.hs b/src/ELynx/Data/Alphabet/Character.hs --- a/src/ELynx/Data/Alphabet/Character.hs +++ b/src/ELynx/Data/Alphabet/Character.hs @@ -5,7 +5,7 @@ -- | -- Module : ELynx.Data.Alphabet.Character -- Description : Alphabet characters --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Alphabet/DistributionDiversity.hs b/src/ELynx/Data/Alphabet/DistributionDiversity.hs --- a/src/ELynx/Data/Alphabet/DistributionDiversity.hs +++ b/src/ELynx/Data/Alphabet/DistributionDiversity.hs @@ -3,7 +3,7 @@ -- | -- Module : ELynx.Data.Alphabet.DistributionDiversity -- Description : Summarize statistics for alphabets --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Character/AminoAcid.hs b/src/ELynx/Data/Character/AminoAcid.hs --- a/src/ELynx/Data/Character/AminoAcid.hs +++ b/src/ELynx/Data/Character/AminoAcid.hs @@ -5,7 +5,7 @@ -- | -- Module : ELynx.Data.AminoAcid -- Description : Amino acid related types and functions --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Character/AminoAcidI.hs b/src/ELynx/Data/Character/AminoAcidI.hs --- a/src/ELynx/Data/Character/AminoAcidI.hs +++ b/src/ELynx/Data/Character/AminoAcidI.hs @@ -5,7 +5,7 @@ -- | -- Module : ELynx.Data.AminoAcid -- Description : Amino acid related types and functions --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Character/AminoAcidS.hs b/src/ELynx/Data/Character/AminoAcidS.hs --- a/src/ELynx/Data/Character/AminoAcidS.hs +++ b/src/ELynx/Data/Character/AminoAcidS.hs @@ -5,7 +5,7 @@ -- | -- Module : ELynx.Data.AminoAcid -- Description : Amino acid related types and functions --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Character/AminoAcidX.hs b/src/ELynx/Data/Character/AminoAcidX.hs --- a/src/ELynx/Data/Character/AminoAcidX.hs +++ b/src/ELynx/Data/Character/AminoAcidX.hs @@ -5,7 +5,7 @@ -- | -- Module : ELynx.Data.AminoAcid -- Description : Amino acid related types and functions --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Character/Character.hs b/src/ELynx/Data/Character/Character.hs --- a/src/ELynx/Data/Character/Character.hs +++ b/src/ELynx/Data/Character/Character.hs @@ -1,7 +1,7 @@ -- | -- Module : Character -- Description : Character interface --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Character/Codon.hs b/src/ELynx/Data/Character/Codon.hs --- a/src/ELynx/Data/Character/Codon.hs +++ b/src/ELynx/Data/Character/Codon.hs @@ -3,7 +3,7 @@ -- | -- Module : ELynx.Data.Character.Codon -- Description : Codons are triplets of nucleotides --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Character/Nucleotide.hs b/src/ELynx/Data/Character/Nucleotide.hs --- a/src/ELynx/Data/Character/Nucleotide.hs +++ b/src/ELynx/Data/Character/Nucleotide.hs @@ -5,7 +5,7 @@ -- | -- Module : ELynx.Data.Nucleotide -- Description : Nucleotides --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Character/NucleotideI.hs b/src/ELynx/Data/Character/NucleotideI.hs --- a/src/ELynx/Data/Character/NucleotideI.hs +++ b/src/ELynx/Data/Character/NucleotideI.hs @@ -5,7 +5,7 @@ -- | -- Module : ELynx.Data.NucleotideI -- Description : Nucleotides with IUPAC characters --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Character/NucleotideX.hs b/src/ELynx/Data/Character/NucleotideX.hs --- a/src/ELynx/Data/Character/NucleotideX.hs +++ b/src/ELynx/Data/Character/NucleotideX.hs @@ -5,7 +5,7 @@ -- | -- Module : ELynx.Data.NucleotideX -- Description : Extended nucleotides including gaps and unknowns --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- -- License : GPL-3.0-or-later -- diff --git a/src/ELynx/Data/Sequence/Alignment.hs b/src/ELynx/Data/Sequence/Alignment.hs --- a/src/ELynx/Data/Sequence/Alignment.hs +++ b/src/ELynx/Data/Sequence/Alignment.hs @@ -1,7 +1,7 @@ -- | -- Module : ELynx.Data.Sequence.Alignment -- Description : Multi sequence alignment related types and functions --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Sequence/Defaults.hs b/src/ELynx/Data/Sequence/Defaults.hs --- a/src/ELynx/Data/Sequence/Defaults.hs +++ b/src/ELynx/Data/Sequence/Defaults.hs @@ -1,7 +1,7 @@ -- | -- Module : ELynx.Defaults -- Description : Various default values --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Sequence/Distance.hs b/src/ELynx/Data/Sequence/Distance.hs --- a/src/ELynx/Data/Sequence/Distance.hs +++ b/src/ELynx/Data/Sequence/Distance.hs @@ -1,7 +1,7 @@ -- | -- Module : ELynx.Data.Sequence.Distance -- Description : Distance functions between sequences --- Copyright : (c) Dominik Schrempf, 2020 +-- Copyright : (c) Dominik Schrempf, 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Sequence/Sequence.hs b/src/ELynx/Data/Sequence/Sequence.hs --- a/src/ELynx/Data/Sequence/Sequence.hs +++ b/src/ELynx/Data/Sequence/Sequence.hs @@ -3,7 +3,7 @@ -- | -- Module : ELynx.Data.Sequence -- Description : Hereditary sequences --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Data/Sequence/Translate.hs b/src/ELynx/Data/Sequence/Translate.hs --- a/src/ELynx/Data/Sequence/Translate.hs +++ b/src/ELynx/Data/Sequence/Translate.hs @@ -1,7 +1,7 @@ -- | -- Module : ELynx.Data.Sequence.Translate -- Description : Translate sequences --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/src/ELynx/Export/Sequence/Fasta.hs b/src/ELynx/Export/Sequence/Fasta.hs --- a/src/ELynx/Export/Sequence/Fasta.hs +++ b/src/ELynx/Export/Sequence/Fasta.hs @@ -1,7 +1,7 @@ -- | -- Module : ELynx.Export.Sequence.Fasta -- Description : Export Fasta sequences --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- diff --git a/src/ELynx/Import/Sequence/Fasta.hs b/src/ELynx/Import/Sequence/Fasta.hs --- a/src/ELynx/Import/Sequence/Fasta.hs +++ b/src/ELynx/Import/Sequence/Fasta.hs @@ -3,7 +3,7 @@ -- | -- Module : ELynx.Import.Sequence.Fasta -- Description : Import Fasta sequences --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- diff --git a/test/ELynx/Data/Alphabet/DistributionDiversitySpec.hs b/test/ELynx/Data/Alphabet/DistributionDiversitySpec.hs --- a/test/ELynx/Data/Alphabet/DistributionDiversitySpec.hs +++ b/test/ELynx/Data/Alphabet/DistributionDiversitySpec.hs @@ -1,6 +1,6 @@ -- | -- Module : ELynx.Data.Alphabet.DistributionDiversitySpec --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/test/ELynx/Data/Sequence/AlignmentSpec.hs b/test/ELynx/Data/Sequence/AlignmentSpec.hs --- a/test/ELynx/Data/Sequence/AlignmentSpec.hs +++ b/test/ELynx/Data/Sequence/AlignmentSpec.hs @@ -1,6 +1,6 @@ -- | -- Module : ELynx.Data.Sequence.AlignmentSpec --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/test/ELynx/Data/Sequence/SequenceSpec.hs b/test/ELynx/Data/Sequence/SequenceSpec.hs --- a/test/ELynx/Data/Sequence/SequenceSpec.hs +++ b/test/ELynx/Data/Sequence/SequenceSpec.hs @@ -1,6 +1,6 @@ -- | -- Module : ELynx.Data.Sequence.SequenceSpec --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/test/ELynx/Data/Sequence/TranslateSpec.hs b/test/ELynx/Data/Sequence/TranslateSpec.hs --- a/test/ELynx/Data/Sequence/TranslateSpec.hs +++ b/test/ELynx/Data/Sequence/TranslateSpec.hs @@ -1,6 +1,6 @@ -- | -- Module : ELynx.Data.Sequence.TranslateSpec --- Copyright : (c) Dominik Schrempf 2018 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/test/ELynx/Export/Sequence/FastaSpec.hs b/test/ELynx/Export/Sequence/FastaSpec.hs --- a/test/ELynx/Export/Sequence/FastaSpec.hs +++ b/test/ELynx/Export/Sequence/FastaSpec.hs @@ -1,6 +1,6 @@ -- | -- Module : ELynx.Export.Sequence.FastaSpec --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com diff --git a/test/ELynx/Import/Sequence/FastaSpec.hs b/test/ELynx/Import/Sequence/FastaSpec.hs --- a/test/ELynx/Import/Sequence/FastaSpec.hs +++ b/test/ELynx/Import/Sequence/FastaSpec.hs @@ -1,6 +1,6 @@ -- | -- Module : ELynx.Import.Sequence.FastaSpec --- Copyright : (c) Dominik Schrempf 2020 +-- Copyright : (c) Dominik Schrempf 2021 -- License : GPL-3.0-or-later -- -- Maintainer : dominik.schrempf@gmail.com