edenskel 1.1.0.0 → 1.1.1.0
raw patch · 6 files changed
+168/−3047 lines, 6 filesPVP ok
version bump matches the API change (PVP)
API changes (from Hackage documentation)
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allGatherBuFlyRD :: (Trans a, Trans b, Trans c) => (a -> b) -> (a -> [b] -> c) -> [RD a] -> [RD c]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allGatherBuFlyRDAt :: (Trans a, Trans b, Trans c) => Places -> (a -> b) -> (a -> [b] -> c) -> [RD a] -> [RD c]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allGatherRD :: (Trans a, Trans b, Trans c) => (a -> b) -> (a -> [b] -> c) -> [RD a] -> [RD c]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allGatherRDAt :: (Trans a, Trans b, Trans c) => Places -> (a -> b) -> (a -> [b] -> c) -> [RD a] -> [RD c]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allReduceRDAt :: (Trans a, Trans b, Trans c) => Places -> (a -> b) -> (b -> b -> b) -> (a -> b -> c) -> [RD a] -> [RD c]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allToAllRDAt :: (Trans a, Trans b, Trans i) => Places -> (Int -> a -> [i]) -> (a -> [i] -> b) -> [RD a] -> [RD b]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: instance (Eq a, Eq b) => Eq (Either' a b)
+ Control.Parallel.Eden.EdenSkel.TopoSkels: instance (NFData a, NFData b) => NFData (Either' a b)
+ Control.Parallel.Eden.EdenSkel.TopoSkels: instance (Trans a, Trans b) => Trans (Either' a b)
+ Control.Parallel.Eden.EdenSkel.TopoSkels: parTransposeRDAt :: Trans b => Places -> [RD [[b]]] -> [RD [[b]]]
Files
- Control/Parallel/Eden/EdenSkel/TopoSkels.hs +165/−54
- Control/Parallel/Eden/EdenSkel/WPSkels.hs +1/−1
- configure +0/−2929
- configure.ac +0/−52
- edenskel.buildinfo.in +0/−1
- edenskel.cabal +2/−10
Control/Parallel/Eden/EdenSkel/TopoSkels.hs view
@@ -35,21 +35,19 @@ -- ** The Hypercube skeleton -- | - -- ** The All-To-All skeleton - -- | The allToAll skeleton allows distributed data exchange and+ -- ** The All-To-All skeleton + -- |The allToAll skeleton allows distributed data exchange and -- transformation including data of all processes. Input and output -- are provided as remote data. A typical application is the- -- distributed transposition of a distributed matrix.- ,allToAllRD, parTransposeRD + -- distributed transposition of a distributed Martrix.+ ,allToAllRDAt, allToAllRD, parTransposeRDAt, parTransposeRD, allGatherRDAt, allGatherRD -- ** The All-Reduce skeleton - -- | The All-Reduce skeleton uses a butterfly topology to reduce the data of+ -- |The skeleton uses a butterfly topology to reduce the data of -- participating processes P in log(|P|) communication stages. Input -- and output are provided as remote data.- --- -- Notice: The number of processes has to be a power of 2!- ,allReduceRD- - ) where+ ,allReduceRDAt, allReduceRD, allGatherBuFlyRDAt, allGatherBuFlyRD ++ ) where #if defined( __PARALLEL_HASKELL__ ) || defined (NOT_PARALLEL) import Control.Parallel.Eden #else@@ -186,20 +184,32 @@ (inA',inB') = fetch2 inA inB in (toParent, release outA, release outB)) +-- | The skeleton creates as many processes as elements in the input list (@np@). +-- The processes get all-to-all connected, each process input is transformed to +-- @np@ intermediate values by the first parameter function, where the @i@-th value+-- will be send to process @i@. The second transformation function combines the initial+-- input and the @np@ received intermediate values to the final output.+allToAllRD :: forall a b i. (Trans a, Trans b, Trans i) + => (Int -> a -> [i]) -- ^transform before bcast (num procs, input, sync-data out)+ -> (a -> [i] ->b) -- ^transform after bcast (input, sync-data in, output)+ -> [RD a] -- ^remote input for each process+ -> [RD b] -- ^remote output for each process+allToAllRD = allToAllRDAt [0] --- | The allToAllRD skeleton creates as many processes as elements in the input list (@np@). --- The processes are all-to-all connected, each process' input is transformed to +-- | The skeleton creates as many processes as elements in the input list (@np@). +-- The processes get all-to-all connected, each process input is transformed to -- @np@ intermediate values by the first parameter function, where the @i@-th value--- will be sent to process @i@. The second transformation function combines the initial+-- will be send to process @i@. The second transformation function combines the initial -- input and the @np@ received intermediate values to the final output.-allToAllRD :: forall a b i. (Trans a, Trans b, Trans i) =>- (Int -> a -> [i]) -- ^transform before bcast (num procs, input, sync-data out)- -> (a -> [i] ->b) -- ^transform after bcast (input, sync-data in, output)- -> [RD a] -- ^remote input for each process- -> [RD b] -- ^remote output for each process-allToAllRD t1 t2 xs = res where+allToAllRDAt :: forall a b i. (Trans a, Trans b, Trans i) + => Places -- ^where to instantiate+ -> (Int -> a -> [i]) -- ^transform before bcast (num procs, input, sync-data out)+ -> (a -> [i] ->b) -- ^transform after bcast (input, sync-data in, output)+ -> [RD a] -- ^remote input for each process+ -> [RD b] -- ^remote output for each process+allToAllRDAt places t1 t2 xs = res where n = length xs --same amount of procs as #xs- (res,iss) = n `pseq` unzip $ parMap (uncurry p) inp+ (res,iss) = n `pseq` unzip $ parMapAt places (uncurry p) inp inp = zip xs $ lazy $ transpose iss p :: RD a-> [RD i]-> (RD b,[RD i])@@ -208,47 +218,148 @@ myIsF = releaseAll . t1 n resF = release . t2 x . fetchAll +-- works similar for splitIntoN and unsplit (concat)??? +-- |Parallel transposition for matrizes which are row-wise round robin distributed among the machines, the transposed result matrix is also row-wise round robin distributed.+parTransposeRD :: Trans b + => [RD [[b]]] -- ^input list of remote partial matrizes+ -> [RD [[b]]] -- ^output list of remote partial matrizes+parTransposeRD = parTransposeRDAt [0] + -- works similar for splitIntoN and unsplit (concat)??? --- |Parallel transposition for matrices which are row-wise round robin distributed among the machines, the transposed result matrix is also row-wise round robin distributed.-parTransposeRD :: Trans b => - [RD [[b]]] -- ^input list of remote partial matrices- -> [RD [[b]]] -- ^output list of remote partial matrices-parTransposeRD = allToAllRD (\ n -> unshuffle n . transpose)- (\ _ -> map shuffle . transpose)+-- |Parallel transposition for matrizes which are row-wise round robin distributed among the machines, the transposed result matrix is also row-wise round robin distributed.+parTransposeRDAt :: Trans b + => Places+ -> [RD [[b]]] -- ^input list of remote partial matrizes+ -> [RD [[b]]] -- ^output list of remote partial matrizes+parTransposeRDAt places = allToAllRDAt places (\ n -> unshuffle n . transpose)+ (\ _ -> map shuffle . transpose) +-- | Performs an all-gather using all to all comunication (based on allToAllRDAt). +-- The initial transformation is applied in the processes to obtain the values that will be reduced.+-- The final combine function is used to create a processes outputs from the initial input and the +-- gathered values.+allGatherRD :: forall a b c. (Trans a, Trans b, Trans c)+ => (a -> b) -- ^initial transform function+ -> (a -> [b] -> c) -- ^final combine function+ -> [RD a] -> [RD c]+allGatherRD = allGatherRDAt [0] +-- | Performs an all-gather using all to all comunication (based on allToAllRDAt).+-- The initial transformation is applied in the processes to obtain the values that will be reduced.+-- The final combine function is used to create a processes outputs from the initial input and the +-- gathered values.+allGatherRDAt :: forall a b c. (Trans a, Trans b, Trans c)+ => Places -- ^where to instantiate+ -> (a -> b) -- ^initial transform function+ -> (a -> [b] -> c) -- ^final combine function+ -> [RD a] -> [RD c]+allGatherRDAt places t1 t2 = allToAllRDAt places t1' t2 where+ t1' :: Int -> a -> [b]+ t1' n x = replicate n (t1 x)++ -- | Performs an all-reduce with the reduce function using a butterfly scheme.--- The input list should have length 2^i, where i is an arbitrary natural number.--- If not, the input list will be truncated to the next smaller power of two. -- The initial transformation is applied in the processes to obtain the values--- that will be reduced. The final combine function is used to create a processes+-- that will be reduced. The final combine function is used to create a processes outputs. -- result from the initial input and the reduced value.-allReduceRD :: forall a b c. (Trans a, Trans b, Trans c) =>- (a -> b) -- ^initial transform function- -> (b -> b -> b) -- ^reduce function- -> (a -> b -> c) -- ^final combine function- -> [RD a] -- ^remote input- -> [RD c] -- ^remote output-allReduceRD initF redF resF rdAs = rdCs where- steps = (floor . logBase 2 . fromIntegral . length) rdAs- rdAs' = take (2^steps) rdAs --cut input to power of 2+allReduceRD :: forall a b c. (Trans a, Trans b, Trans c)+ => (a -> b) -- ^initial transform function+ -> (b -> b -> b) -- ^reduce function+ -> (a -> b -> c) -- ^final combine function+ -> [RD a] -> [RD c]+allReduceRD = allReduceRDAt [0] where - -- topology, inputs and instantiation- (rdBss,rdCs) = unzip $ parMap (uncurry p) inp --steps in rows- bufly = zipWith bitFlipF [1..steps] $ transpose rdBss- inp = zip rdAs' $ lazy $ transpose bufly --steps in cols - -- process functionality and abstraction- p :: RD a -> [RD b] -> ([RD b], RD c)- p rdA theirReds = (reduced, release $ resF a $ head res) where- reduced = (releaseAll . scanl1 redF) toReduce- (toReduce,res) = splitAt steps $ initF a : fetchAll theirReds'- theirReds' = zipWith (curry snd) [1..steps] $ lazy theirReds- a = fetch rdA+-- | Performs an all-reduce with the reduce function using a butterfly scheme.+-- The initial transformation is applied in the processes to obtain the values+-- that will be reduced. The final combine function is used to create a processes output.+-- result from the initial input and the reduced value.+allReduceRDAt :: forall a b c. (Trans a, Trans b, Trans c)+ => Places -- ^where to instantiate+ -> (a -> b) -- ^initial transform function+ -> (b -> b -> b) -- ^reduce function+ -> (a -> b -> c) -- ^final combine function+ -> [RD a] -> [RD c]+allReduceRDAt places initF redF resF rdAs = rdCs where+ steps = (ceiling . logBase 2 . fromIntegral . length) rdAs+ (rdBss,rdCs) = steps `pseq` unzip $ parMapAt places (uncurry p) inp+ inp = zip rdAs $ lazy $ buflyF $ transposeRt rdBss+ buflyF = transposeRt . shiftFlipF steps . fillF steps+ + p :: RD a -> [Maybe (Both (RD b))] -> ([RD b], RD c)+ p rdA rdBs = (rdBs'', res) where+ res = release $ resF a $ reduced !! steps+ rdBs'' = (releaseAll . take steps . lazy) reduced+ reduced = scanl redF' b toReduce+ toReduce = fetchAll' rdBs'+ rdBs' = zipWith (flip maybe Left') (map Right' rdBs'') rdBs+ b = initF a+ a = fetch rdA+ + --List encoding:+ -- Right': No Partner present, use value b without reduction+ -- Left': RD value comes from partner, then inner encoding:+ -- Right': Partner is positioned at the right hand side+ -- Left': Partner is positioned at the left hand side+ -- needed such that redF does not need to be commutativie+ redF' :: b -> Either' (Both b) b -> b+ redF' _ (Right' b) = b+ redF' b (Left' (Right' b')) = redF b b'+ redF' b (Left' (Left' b')) = redF b' b -bitFlipF :: Int -> [a] -> [a]-bitFlipF step xs = (shuffle . flipAtHalfF . unshuffle d) xs where- d = (2 ^ step)- flipAtHalfF xs = let (xs1, xs2) = splitAt (d `div` 2) xs- in xs2 ++ xs1+type Both a = Either' a a++--custom fetchAll inside nested Eithers+fetchAll' :: Trans a => [Either' (Both (RD a)) (RD a)] -> [Either' (Both a) a]+fetchAll' = runPA . mapM fetchPA' where+ fetchPA' (Left' (Left' rda)) = do a <- fetchPA rda+ return $ Left' $ Left' a+ fetchPA' (Left' (Right' rda)) = do a <- fetchPA rda+ return $ Left' $ Right' a+ fetchPA' (Right' rda) = do a <- fetchPA rda+ return $ Right' a++--Fill rows to the power of ldn with Nothing, map Just to the rest+fillF :: Int -> [[a]] -> [[Maybe a]]+fillF ldn ass = map fillRow ass where+ n = 2 ^ ldn+ fillRow as = take n $ (map Just as) ++ (repeat Nothing)++shiftFlipF :: Int -> [[Maybe a]] -> [[Maybe (Both a)]]+shiftFlipF ldn rdBss = zipWith shiftFlipRow [1..ldn] rdBss where + shiftFlipRow ldi rdBs = (shuffle . flipAtHalfF . unshuffle i) rdBs where+ i = 2 ^ ldi+ flipAtHalfF xs = let (xs1, xs2) = splitAt (i`div`2) xs + in map (map (fmap Right')) xs2 ++ map (map (fmap Left')) xs1+++-- | Performs an all-gather using a butterfly scheme (based on allReduceRDAt). +-- The initial transformation is applied in the processes to obtain the values that will be reduced.+-- The final combine function is used to create a processes outputs from the initial input and the +-- gathered values.+allGatherBuFlyRD :: forall a b c. (Trans a, Trans b, Trans c)+ => (a -> b) -- ^initial transform function+ -> (a -> [b] -> c) -- ^final combine function+ -> [RD a] -> [RD c]+allGatherBuFlyRD = allGatherBuFlyRDAt [0]++-- | Performs an all-gather using a butterfly scheme (based on allReduceRDAt). +-- The initial transformation is applied in the processes to obtain the values that will be reduced.+-- The final combine function is used to create a processes outputs from the initial input and the +-- gathered values.+allGatherBuFlyRDAt :: forall a b c. (Trans a, Trans b, Trans c)+ => Places -- ^where to instantiate+ -> (a -> b) -- ^initial transform function+ -> (a -> [b] -> c) -- ^final combine function+ -> [RD a] -> [RD c]+allGatherBuFlyRDAt places t1 t2 = allReduceRDAt places t1' (++) t2 where+ t1' :: a -> [b]+ t1' a = [t1 a]++data Either' a b = Left' a | Right' b+ deriving (Eq)+instance (NFData a, NFData b) => NFData (Either' a b) where+ rnf (Left' x) = rnf x+ rnf (Right' y) = rnf y+instance (Trans a,Trans b) => Trans (Either' a b)
Control/Parallel/Eden/EdenSkel/WPSkels.hs view
@@ -278,7 +278,7 @@ = map snd fromWorkers where fromWorkers :: [([Int],r)]- fromWorkers = spawnFAt pos (map worker [1..np]) taskss+ fromWorkers = spawnFAt pos (map worker [0..np-1]) taskss taskss = distribute np (initialReqs ++ newReqs) tasks initialReqs = concat (replicate prefetch [0..np-1]) newReqs = merge (map fst fromWorkers)
− configure
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− configure.ac
@@ -1,52 +0,0 @@-AC_INIT([Eden skeleton library for parallel Haskell], [1.1.0.0], [eden@informatik.uni-marburg.de], [edenskel])--# Safety check: Ensure that we are in the correct source directory.-AC_CONFIG_SRCDIR([edenskel.cabal])--# figure out GHC to use-AC_ARG_WITH([compiler],- [AC_HELP_STRING([--with-compiler=ARG],- [Use path ARG for GHC (we only support GHC!)])],- [WithGhc="$withval"],- [if test "$HC" = ""; then- AC_PATH_PROG([GHC], [ghc])- fi- WithGhc="$GHC"])--AC_SUBST([WithGhc])--# we require it to be really GHC-AS_IF([test "$WithGhc" == ""],- AC_MSG_ERROR([GHC is required for this library.]))--# GHC should be callable-AS_IF([$WithGhc --version],[],- AC_MSG_ERROR([Your GHC does not work!]))--AC_MSG_CHECKING([for Eden extensions to the GHC runtime system])-# create Haskell which imports primitives-rm -f conftest.*; -cat > conftest.hs << EOF-{-# OPTIONS_GHC -XMagicHash #-}-module Edentest where-import GHC.Base(expectData#, connectToPort#, sendData# )-test s = expectData# s-EOF-#try to compile this, using WithGhc:-AS_IF( $WithGhc -c conftest.hs 2>&AS_MESSAGE_LOG_FD ,- [AC_MSG_RESULT([found]); eden=YES],- [AC_MSG_RESULT([not found]); eden=NO ]-)--# Build the package as a simulation if the runtime does not support Eden-if test "$eden" = YES- then AC_MSG_RESULT([Parallel build enabled])- NOT_PARALLEL=- else AC_MSG_RESULT([Parallel build disabled-using simulation])- NOT_PARALLEL=-DNOT_PARALLEL-fi-AC_SUBST([NOT_PARALLEL])--# this creates the buildinfo file from buildinfo.in-AC_CONFIG_FILES([edenskel.buildinfo])-AC_OUTPUT
− edenskel.buildinfo.in
@@ -1,1 +0,0 @@-cpp-options: @NOT_PARALLEL@
edenskel.cabal view
@@ -1,5 +1,5 @@ name: edenskel-version: 1.1.0.0+version: 1.1.1.0 license: BSD3 license-file: LICENSE maintainer: eden@mathematik.uni-marburg.de@@ -17,16 +17,8 @@ The Eden homepage <http://www.mathematik.uni-marburg.de/~eden> provides more documentation and a tutorial. category: Control, Distributed Computing, Eden, Parallelism-build-type: Configure+build-type: Simple cabal-version: >=1.6--extra-source-files: - edenskel.buildinfo.in,- configure,- configure.ac-extra-tmp-files:config.status,- config.log,- edenskel.buildinfo source-repository head type: git