packages feed

edenskel 1.1.0.0 → 1.1.1.0

raw patch · 6 files changed

+168/−3047 lines, 6 filesPVP ok

version bump matches the API change (PVP)

API changes (from Hackage documentation)

+ Control.Parallel.Eden.EdenSkel.TopoSkels: allGatherBuFlyRD :: (Trans a, Trans b, Trans c) => (a -> b) -> (a -> [b] -> c) -> [RD a] -> [RD c]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allGatherBuFlyRDAt :: (Trans a, Trans b, Trans c) => Places -> (a -> b) -> (a -> [b] -> c) -> [RD a] -> [RD c]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allGatherRD :: (Trans a, Trans b, Trans c) => (a -> b) -> (a -> [b] -> c) -> [RD a] -> [RD c]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allGatherRDAt :: (Trans a, Trans b, Trans c) => Places -> (a -> b) -> (a -> [b] -> c) -> [RD a] -> [RD c]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allReduceRDAt :: (Trans a, Trans b, Trans c) => Places -> (a -> b) -> (b -> b -> b) -> (a -> b -> c) -> [RD a] -> [RD c]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: allToAllRDAt :: (Trans a, Trans b, Trans i) => Places -> (Int -> a -> [i]) -> (a -> [i] -> b) -> [RD a] -> [RD b]
+ Control.Parallel.Eden.EdenSkel.TopoSkels: instance (Eq a, Eq b) => Eq (Either' a b)
+ Control.Parallel.Eden.EdenSkel.TopoSkels: instance (NFData a, NFData b) => NFData (Either' a b)
+ Control.Parallel.Eden.EdenSkel.TopoSkels: instance (Trans a, Trans b) => Trans (Either' a b)
+ Control.Parallel.Eden.EdenSkel.TopoSkels: parTransposeRDAt :: Trans b => Places -> [RD [[b]]] -> [RD [[b]]]

Files

Control/Parallel/Eden/EdenSkel/TopoSkels.hs view
@@ -35,21 +35,19 @@   -- ** The Hypercube skeleton   -- | -  -- ** The All-To-All skeleton -  -- | The allToAll skeleton allows distributed data exchange and+    -- ** The All-To-All skeleton +  -- |The allToAll skeleton allows distributed data exchange and   -- transformation including data of all processes. Input and output   -- are provided as remote data. A typical application is the-  -- distributed transposition of a distributed matrix.-  ,allToAllRD, parTransposeRD           +  -- distributed transposition of a distributed Martrix.+  ,allToAllRDAt, allToAllRD, parTransposeRDAt, parTransposeRD, allGatherRDAt, allGatherRD        -- ** The All-Reduce skeleton   -  -- | The All-Reduce skeleton uses a butterfly topology to reduce the data of+  -- |The skeleton uses a butterfly topology to reduce the data of   -- participating processes P in log(|P|) communication stages. Input   -- and output are provided as remote data.-  ---  -- Notice: The number of processes has to be a power of 2!-  ,allReduceRD-  -    ) where+  ,allReduceRDAt, allReduceRD, allGatherBuFlyRDAt, allGatherBuFlyRD  ++  ) where #if defined( __PARALLEL_HASKELL__ ) || defined (NOT_PARALLEL) import Control.Parallel.Eden #else@@ -186,20 +184,32 @@                    (inA',inB')            = fetch2 inA inB                in  (toParent,   release outA,  release outB)) +-- | The skeleton creates as many processes as elements in the input list (@np@). +-- The processes get all-to-all connected, each process input is transformed to +-- @np@ intermediate values by the first parameter function, where the @i@-th value+-- will be send to process @i@. The second transformation function combines the initial+-- input and the @np@ received intermediate values to the final output.+allToAllRD :: forall a b i. (Trans a, Trans b, Trans i) +                => (Int -> a -> [i]) -- ^transform before bcast (num procs, input, sync-data out)+                -> (a -> [i] ->b)    -- ^transform after bcast (input, sync-data in, output)+                -> [RD a]            -- ^remote input for each process+                -> [RD b]            -- ^remote output for each process+allToAllRD = allToAllRDAt [0] --- | The allToAllRD skeleton creates as many processes as elements in the input list (@np@). --- The processes are all-to-all connected, each process' input is transformed to +-- | The skeleton creates as many processes as elements in the input list (@np@). +-- The processes get all-to-all connected, each process input is transformed to  -- @np@ intermediate values by the first parameter function, where the @i@-th value--- will be sent to process @i@. The second transformation function combines the initial+-- will be send to process @i@. The second transformation function combines the initial -- input and the @np@ received intermediate values to the final output.-allToAllRD :: forall a b i. (Trans a, Trans b, Trans i) =>-            (Int -> a -> [i])      -- ^transform before bcast (num procs, input, sync-data out)-            -> (a -> [i] ->b)      -- ^transform after bcast (input, sync-data in, output)-            -> [RD a]              -- ^remote input for each process-            -> [RD b]              -- ^remote output for each process-allToAllRD t1 t2 xs = res where+allToAllRDAt :: forall a b i. (Trans a, Trans b, Trans i) +                => Places            -- ^where to instantiate+                -> (Int -> a -> [i]) -- ^transform before bcast (num procs, input, sync-data out)+                -> (a -> [i] ->b)    -- ^transform after bcast (input, sync-data in, output)+                -> [RD a]            -- ^remote input for each process+                -> [RD b]            -- ^remote output for each process+allToAllRDAt places t1 t2 xs = res where   n = length xs           --same amount of procs as #xs-  (res,iss) = n `pseq` unzip $ parMap (uncurry p) inp+  (res,iss) = n `pseq` unzip $ parMapAt places (uncurry p) inp   inp       = zip xs $ lazy $ transpose iss    p :: RD a-> [RD i]-> (RD b,[RD i])@@ -208,47 +218,148 @@     myIsF  = releaseAll . t1 n     resF   = release . t2 x . fetchAll +-- works similar for splitIntoN and unsplit (concat)??? +-- |Parallel transposition for matrizes which are row-wise round robin distributed among the machines, the transposed result matrix is also row-wise round robin distributed.+parTransposeRD :: Trans b +                  => [RD [[b]]] -- ^input list of remote partial matrizes+                  -> [RD [[b]]] -- ^output list of remote partial matrizes+parTransposeRD = parTransposeRDAt [0] + -- works similar for splitIntoN and unsplit (concat)??? --- |Parallel transposition for matrices which are row-wise round robin distributed among the machines, the transposed result matrix is also row-wise round robin distributed.-parTransposeRD :: Trans b =>  -                  [RD [[b]]]    -- ^input list of remote partial matrices-                  -> [RD [[b]]] -- ^output list of remote partial matrices-parTransposeRD = allToAllRD (\ n -> unshuffle n . transpose)-                            (\ _ -> map shuffle . transpose)+-- |Parallel transposition for matrizes which are row-wise round robin distributed among the machines, the transposed result matrix is also row-wise round robin distributed.+parTransposeRDAt :: Trans b +                    => Places+                    -> [RD [[b]]] -- ^input list of remote partial matrizes+                    -> [RD [[b]]] -- ^output list of remote partial matrizes+parTransposeRDAt places = allToAllRDAt places (\ n -> unshuffle n . transpose)+                                              (\ _ -> map shuffle . transpose) +-- | Performs an all-gather using all to all comunication (based on allToAllRDAt). +-- The initial transformation is applied in  the processes to obtain the values that will be reduced.+-- The final combine function is used to create a processes outputs from the initial input and the +-- gathered values.+allGatherRD :: forall a b c. (Trans a, Trans b, Trans c)+               => (a -> b)         -- ^initial transform function+               -> (a -> [b] -> c)  -- ^final combine function+               -> [RD a] -> [RD c]+allGatherRD = allGatherRDAt [0] +-- | Performs an all-gather using all to all comunication (based on allToAllRDAt).+-- The initial transformation is applied in  the processes to obtain the values that will be reduced.+-- The final combine function is used to create a processes outputs from the initial input and the +-- gathered values.+allGatherRDAt :: forall a b c. (Trans a, Trans b, Trans c)+                      => Places           -- ^where to instantiate+                      -> (a -> b)         -- ^initial transform function+                      -> (a -> [b] -> c)  -- ^final combine function+                      -> [RD a] -> [RD c]+allGatherRDAt places t1 t2 = allToAllRDAt places t1' t2 where+  t1' :: Int -> a -> [b]+  t1' n x = replicate n (t1 x)++ -- | Performs an all-reduce with the reduce function using a butterfly scheme.--- The input list should have length 2^i, where i is an arbitrary natural number.--- If not, the input list will be truncated to the next smaller power of two. -- The initial transformation is applied in the processes to obtain the values--- that will be reduced. The final combine function is used to create a processes+-- that will be reduced. The final combine function is used to create a processes outputs. -- result from the initial input and the reduced value.-allReduceRD :: forall a b c. (Trans a, Trans b, Trans c) =>-             (a -> b)               -- ^initial transform function-             -> (b -> b -> b)       -- ^reduce function-             -> (a -> b -> c)       -- ^final combine function-             -> [RD a]              -- ^remote input-             -> [RD c]              -- ^remote output-allReduceRD initF redF resF rdAs = rdCs where-  steps = (floor . logBase 2 . fromIntegral . length) rdAs-  rdAs' = take (2^steps) rdAs          --cut input to power of 2+allReduceRD :: forall a b c. (Trans a, Trans b, Trans c)+               => (a -> b)       -- ^initial transform function+               -> (b -> b -> b)  -- ^reduce function+               -> (a -> b -> c)  -- ^final combine function+               -> [RD a] -> [RD c]+allReduceRD = allReduceRDAt [0] where - -- topology, inputs and instantiation-  (rdBss,rdCs) = unzip $ parMap (uncurry p) inp         --steps in rows-  bufly = zipWith bitFlipF [1..steps] $ transpose rdBss-  inp   = zip rdAs' $ lazy $ transpose bufly            --steps in cols - -- process functionality and abstraction-  p :: RD a -> [RD b] -> ([RD b], RD c)-  p rdA theirReds  = (reduced, release $ resF a $ head res) where-    reduced        = (releaseAll . scanl1 redF) toReduce-    (toReduce,res) = splitAt steps $ initF a  : fetchAll theirReds'-    theirReds'     = zipWith (curry snd) [1..steps] $ lazy theirReds-    a              = fetch rdA+-- | Performs an all-reduce with the reduce function using a butterfly scheme.+-- The initial transformation is applied in the processes to obtain the values+-- that will be reduced. The final combine function is used to create a processes output.+-- result from the initial input and the reduced value.+allReduceRDAt :: forall a b c. (Trans a, Trans b, Trans c)+               => Places         -- ^where to instantiate+               -> (a -> b)       -- ^initial transform function+               -> (b -> b -> b)  -- ^reduce function+               -> (a -> b -> c)  -- ^final combine function+               -> [RD a] -> [RD c]+allReduceRDAt places initF redF resF rdAs = rdCs where+  steps = (ceiling . logBase 2 . fromIntegral . length) rdAs+  (rdBss,rdCs) = steps `pseq` unzip $ parMapAt places (uncurry p) inp+  inp          = zip rdAs $ lazy $ buflyF $ transposeRt rdBss+  buflyF       = transposeRt . shiftFlipF steps . fillF steps+  +  p :: RD a -> [Maybe (Both (RD b))] -> ([RD b], RD c)+  p rdA rdBs = (rdBs'', res) where+    res      = release $ resF a $ reduced !! steps+    rdBs''   = (releaseAll . take steps . lazy) reduced+    reduced  = scanl redF' b toReduce+    toReduce = fetchAll' rdBs'+    rdBs'    = zipWith (flip maybe Left') (map Right' rdBs'') rdBs+    b        = initF a+    a        = fetch rdA+  +  --List encoding:+  -- Right': No Partner present, use value b without reduction+  -- Left': RD value comes from partner, then inner encoding:+  --       Right': Partner is positioned at the right hand side+  --       Left': Partner is positioned at the left hand side+  -- needed such that redF does not need to be commutativie+  redF' :: b -> Either' (Both b) b -> b+  redF' _ (Right' b) = b+  redF' b (Left' (Right' b')) = redF b b'+  redF' b (Left' (Left' b'))  = redF b' b -bitFlipF :: Int -> [a] -> [a]-bitFlipF step xs = (shuffle . flipAtHalfF . unshuffle d) xs where-  d = (2 ^ step)-  flipAtHalfF xs = let (xs1, xs2) = splitAt (d `div` 2) xs-                   in xs2 ++ xs1+type Both a = Either' a a++--custom fetchAll inside nested Eithers+fetchAll' :: Trans a => [Either' (Both (RD a)) (RD a)] -> [Either' (Both a) a]+fetchAll' = runPA . mapM fetchPA' where+  fetchPA' (Left' (Left' rda))  = do a <- fetchPA rda+                                     return $ Left' $ Left' a+  fetchPA' (Left' (Right' rda)) = do a <- fetchPA rda+                                     return $ Left' $ Right' a+  fetchPA' (Right' rda)        = do a <- fetchPA rda+                                    return $ Right' a++--Fill rows to the power of ldn with Nothing, map Just to the rest+fillF :: Int -> [[a]] -> [[Maybe a]]+fillF ldn ass = map fillRow ass where+  n = 2 ^ ldn+  fillRow as = take n $ (map Just as) ++ (repeat Nothing)++shiftFlipF :: Int -> [[Maybe a]] -> [[Maybe (Both a)]]+shiftFlipF ldn rdBss = zipWith shiftFlipRow [1..ldn] rdBss  where  +  shiftFlipRow ldi rdBs = (shuffle . flipAtHalfF . unshuffle i) rdBs where+    i = 2 ^ ldi+    flipAtHalfF xs = let (xs1, xs2) = splitAt (i`div`2) xs +                     in map (map (fmap Right')) xs2 ++ map (map (fmap Left')) xs1+++-- | Performs an all-gather using a butterfly scheme (based on allReduceRDAt). +-- The initial transformation is applied in  the processes to obtain the values that will be reduced.+-- The final combine function is used to create a processes outputs from the initial input and the +-- gathered values.+allGatherBuFlyRD :: forall a b c. (Trans a, Trans b, Trans c)+                    => (a -> b)         -- ^initial transform function+                    -> (a -> [b] -> c)  -- ^final combine function+                    -> [RD a] -> [RD c]+allGatherBuFlyRD = allGatherBuFlyRDAt [0]++-- | Performs an all-gather using a butterfly scheme (based on allReduceRDAt). +-- The initial transformation is applied in  the processes to obtain the values that will be reduced.+-- The final combine function is used to create a processes outputs from the initial input and the +-- gathered values.+allGatherBuFlyRDAt :: forall a b c. (Trans a, Trans b, Trans c)+                      => Places           -- ^where to instantiate+                      -> (a -> b)         -- ^initial transform function+                      -> (a -> [b] -> c)  -- ^final combine function+                      -> [RD a] -> [RD c]+allGatherBuFlyRDAt places t1 t2 = allReduceRDAt places t1' (++) t2 where+  t1' :: a -> [b]+  t1' a = [t1 a]++data  Either' a b  =  Left' a | Right' b+  deriving (Eq)+instance (NFData a, NFData b) => NFData (Either' a b) where+    rnf (Left' x)  = rnf x+    rnf (Right' y) = rnf y+instance (Trans a,Trans b) => Trans (Either' a b)
Control/Parallel/Eden/EdenSkel/WPSkels.hs view
@@ -278,7 +278,7 @@    = map snd fromWorkers     where                fromWorkers :: [([Int],r)]-            fromWorkers = spawnFAt pos (map worker [1..np]) taskss+            fromWorkers = spawnFAt pos (map worker [0..np-1]) taskss             taskss      = distribute np (initialReqs ++ newReqs) tasks             initialReqs = concat (replicate prefetch [0..np-1])             newReqs     = merge (map fst fromWorkers)
− configure
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− configure.ac
@@ -1,52 +0,0 @@-AC_INIT([Eden skeleton library for parallel Haskell], [1.1.0.0], [eden@informatik.uni-marburg.de], [edenskel])--# Safety check: Ensure that we are in the correct source directory.-AC_CONFIG_SRCDIR([edenskel.cabal])--# figure out GHC to use-AC_ARG_WITH([compiler],-            [AC_HELP_STRING([--with-compiler=ARG],-	                    [Use path ARG for GHC (we only support GHC!)])],-	    [WithGhc="$withval"],-            [if test "$HC" = ""; then-	       AC_PATH_PROG([GHC], [ghc])-	     fi-	     WithGhc="$GHC"])--AC_SUBST([WithGhc])--# we require it to be really GHC-AS_IF([test "$WithGhc" == ""],-      AC_MSG_ERROR([GHC is required for this library.]))--# GHC should be callable-AS_IF([$WithGhc --version],[],-      AC_MSG_ERROR([Your GHC does not work!]))--AC_MSG_CHECKING([for Eden extensions to the GHC runtime system])-# create Haskell which imports primitives-rm -f conftest.*; -cat > conftest.hs << EOF-{-#  OPTIONS_GHC -XMagicHash #-}-module Edentest where-import GHC.Base(expectData#, connectToPort#, sendData# )-test s = expectData# s-EOF-#try to compile this, using WithGhc:-AS_IF( $WithGhc -c conftest.hs 2>&AS_MESSAGE_LOG_FD ,-      [AC_MSG_RESULT([found]); eden=YES],-      [AC_MSG_RESULT([not found]); eden=NO ]-)--# Build the package as a simulation if the runtime does not support Eden-if test "$eden" = YES-  then AC_MSG_RESULT([Parallel build enabled])-       NOT_PARALLEL=-  else AC_MSG_RESULT([Parallel build disabled-using simulation])-       NOT_PARALLEL=-DNOT_PARALLEL-fi-AC_SUBST([NOT_PARALLEL])--# this creates the buildinfo file from buildinfo.in-AC_CONFIG_FILES([edenskel.buildinfo])-AC_OUTPUT
− edenskel.buildinfo.in
@@ -1,1 +0,0 @@-cpp-options: @NOT_PARALLEL@
edenskel.cabal view
@@ -1,5 +1,5 @@ name:		edenskel-version:	1.1.0.0+version:	1.1.1.0 license:	BSD3 license-file:	LICENSE maintainer:	eden@mathematik.uni-marburg.de@@ -17,16 +17,8 @@     The Eden homepage     <http://www.mathematik.uni-marburg.de/~eden>     provides more documentation and a tutorial. category:       Control, Distributed Computing, Eden, Parallelism-build-type:     Configure+build-type:     Simple cabal-version:  >=1.6--extra-source-files: -                edenskel.buildinfo.in,-                configure,-                configure.ac-extra-tmp-files:config.status,-                config.log,-                edenskel.buildinfo  source-repository head     type:     git