diversity 0.4.0.1 → 0.4.0.2

raw patch · 2 files changed

+5/−3 lines, 2 filesdep +scientificPVP ok

version bump matches the API change (PVP)

Dependencies added: scientific

API changes (from Hackage documentation)

Files

diversity.cabal +2/−2
src/src-exec/Main.hs +3/−1

diversity.cabal view

@@ -2,7 +2,7 @@ -- documentation, see http://haskell.org/cabal/users-guide/  name:                diversity-version:             0.4.0.1+version:             0.4.0.2 synopsis:            Return the diversity at each position for all sequences in a fasta file description:         Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag. homepage:            https://github.com/GregorySchwartz/diversity@@ -20,7 +20,7 @@   hs-source-dirs:      src/src-lib   exposed-modules:     Math.Diversity.Types, Math.Diversity.Diversity, Math.Diversity.GenerateDiversity, Math.Diversity.Print   -- other-modules:-  build-depends:       base >=4.6 && <4.8, containers >=0.5 && <0.6, split >=0.2 && <0.3, parsec >=3.1 && <4.0, fasta >=0.5.1.3 && <0.6, math-functions >=0.1 && <0.2+  build-depends:       base >=4.6 && <4.8, containers >=0.5 && <0.6, split >=0.2 && <0.3, parsec >=3.1 && <4.0, fasta >=0.5.1.3 && <0.6, math-functions >=0.1 && <0.2, scientific >= 0.3 && < 0.4  executable diversity   ghc-options: -O2

src/src-exec/Main.hs view

@@ -84,7 +84,9 @@           ( long "fast-bin"          <> short 'f'          <> help "Whether to use a much faster, but approximated, binomial\-                 \ coefficient for the rarefaction analysis" )+                 \ coefficient for the rarefaction analysis. This method\+                 \ results in NaNs for larger numbers, so in that case you\+                 \ you should use the slower, more accurate default method" )       <*> switch           ( long "remove-N"          <> short 'n'