diversity 0.3.5.1 → 0.4.0.0

raw patch · 3 files changed

+5/−4 lines, 3 filesPVP ok

version bump matches the API change (PVP)

API changes (from Hackage documentation)

Files

• diversity.cabal +1/−1
• src/src-exec/Main.hs +2/−1
• src/src-lib/Math/Diversity/Diversity.hs +2/−2

@@ -2,7 +2,7 @@ -- documentation, see http://haskell.org/cabal/users-guide/  name:                diversity-version:             0.3.5.1+version:             0.4.0.0 synopsis:            Return the diversity at each position for all sequences in a fasta file description:         Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag. homepage:            https://github.com/GregorySchwartz/diversity

@@ -78,7 +78,8 @@          <> help "The start point and interval of subsamples in the\                  \ rarefaction curve. For instance, '1 1' would be 1, 2, 3, ...\                  \ '2 6' would be 2, 8, 14, ... Note: input is a string so\-                 \ use quotations around the entry" )+                 \ use quotations around the entry and it always has the\+                 \ number of subsamples overall as the last point" )       <*> switch           ( long "fast-bin"          <> short 'f'

@@ -54,7 +54,7 @@                  -> [a]                  -> [(Int, Double)] rarefactionCurve fastBin start interval xs =-    map rarefact [start,(start + interval)..n_total]+    map rarefact $ [start,(start + interval)..(n_total - 1)] ++ [n_total]   where     rarefact n         | n == 0       = (fromIntegral n, 0)@@ -85,7 +85,7 @@                        -> [(a, b)]                        -> [(Int, Double)] rarefactionSampleCurve fastBin start interval ls =-    map rarefact [start,(start + interval)..t_total]+    map rarefact $ [start,(start + interval)..(t_total - 1)] ++ [t_total]   where     rarefact t         | t == 0       = (t, 0)