diversity 0.3.5.0 → 0.3.5.1

raw patch · 2 files changed

+7/−4 lines, 2 filesPVP ok

version bump matches the API change (PVP)

API changes (from Hackage documentation)

Files

• diversity.cabal +1/−1
• src/src-exec/Main.hs +6/−3

@@ -2,7 +2,7 @@ -- documentation, see http://haskell.org/cabal/users-guide/  name:                diversity-version:             0.3.5.0+version:             0.3.5.1 synopsis:            Return the diversity at each position for all sequences in a fasta file description:         Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag. homepage:            https://github.com/GregorySchwartz/diversity

@@ -119,19 +119,22 @@          <> value ""          <> help "The csv file containing the rarefaction values (the percent\                  \ of the rarefaction curve that is above 95% of the height of\-                 \ the rarefaction curve)" )+                 \ the rarefaction curve). Expects a string, so you need a\+                 \ string even with std" )       <*> strOption           ( long "output-rarefaction-curve"          <> short 'c'          <> metavar "FILE"          <> value ""-         <> help "The csv file containing the rarefaction curve" )+         <> help "The csv file containing the rarefaction curve. Expects a\+                 \ a string, so you need a string even with std" )       <*> strOption           ( long "output"          <> short 'o'          <> metavar "FILE"          <> value ""-         <> help "The csv file containing the diversities at each position" )+         <> help "The csv file containing the diversities at each position.\+                 \ expects a string, so you need a string wven with std" )  generateDiversity :: Options -> IO () generateDiversity opts = do