diff --git a/changelog.md b/changelog.md --- a/changelog.md +++ b/changelog.md @@ -1,49 +1,61 @@ +0.3 + * 'datasets' hosted within the DataHaskell/dh-core project + + * use 'req' for HTTP and HTTPS requests, instead of 'wreq' + + * Mushroom and Titanic datasets + + * Restructured top-level documentation + + * Removed 'csvDatasetPreprocess' and added 'withPreprocess'. Now bytestring preprocessing is more compositional, i.e. 'withPreprocess' can be used with JSON datasets as well. + + 0.2.5 -* Old faithful matches R dataset + * Old Faithful matches R dataset 0.2.4 -* Netflix dataset + * Netflix dataset -0.2.3 +0.2.3 -* Coal dataset + * Coal dataset -* New internal API + * New internal API -* Ord instance for IrisClass + * Ord instance for IrisClass 0.2.2 -* Enum, bounded instances for IrisClass + * Enum, Bounded instances for IrisClass -* Gapminder dataset + * Gapminder dataset -* Use wreq for HTTP and HTTPS requests + * Use wreq for HTTP and HTTPS requests 0.2.1 -* Wine quality datasets + * Wine quality datasets -* Vocabulary, UN, States datasets + * Vocabulary, UN, States datasets -* CO2, Sunspots and Quakes datasets + * CO2, Sunspots and Quakes datasets 0.2.0.3 -* Further GHC portability + * Further GHC portability 0.2.0.2 -* Improve GHC portability + * Improve GHC portability 0.2.0.1 -* Bugfix: include embedded data files in cabal extra-source-files + * Bugfix: include embedded data files in cabal extra-source-files 0.2 -* iris dataset is a pure value (with file-embed) + * iris dataset is a pure value (with file-embed) -* Michelson, Nightingale and BostonHousing datasets + * Michelson, Nightingale and BostonHousing datasets diff --git a/datafiles/titanic2_full.tsv b/datafiles/titanic2_full.tsv new file mode 100644 --- /dev/null +++ b/datafiles/titanic2_full.tsv @@ -0,0 +1,892 @@ +"PassengerId" "Survived" "Pclass" "Name" "Sex" "Age" "SibSp" "Parch" "Ticket" "Fare" "Cabin" "Embarked" +1 0 3 "Braund, Mr. Owen Harris" "male" 22 1 0 "A/5 21171" 7.25 "" "S" +2 1 1 "Cumings, Mrs. John Bradley (Florence Briggs Thayer)" "female" 38 1 0 "PC 17599" 71.2833 "C85" "C" +3 1 3 "Heikkinen, Miss. Laina" "female" 26 0 0 "STON/O2. 3101282" 7.925 "" "S" +4 1 1 "Futrelle, Mrs. Jacques Heath (Lily May Peel)" "female" 35 1 0 "113803" 53.1 "C123" "S" +5 0 3 "Allen, Mr. William Henry" "male" 35 0 0 "373450" 8.05 "" "S" +6 0 3 "Moran, Mr. James" "male" NA 0 0 "330877" 8.4583 "" "Q" +7 0 1 "McCarthy, Mr. Timothy J" "male" 54 0 0 "17463" 51.8625 "E46" "S" +8 0 3 "Palsson, Master. Gosta Leonard" "male" 2 3 1 "349909" 21.075 "" "S" +9 1 3 "Johnson, Mrs. Oscar W (Elisabeth Vilhelmina Berg)" "female" 27 0 2 "347742" 11.1333 "" "S" +10 1 2 "Nasser, Mrs. Nicholas (Adele Achem)" "female" 14 1 0 "237736" 30.0708 "" "C" +11 1 3 "Sandstrom, Miss. Marguerite Rut" "female" 4 1 1 "PP 9549" 16.7 "G6" "S" +12 1 1 "Bonnell, Miss. Elizabeth" "female" 58 0 0 "113783" 26.55 "C103" "S" +13 0 3 "Saundercock, Mr. William Henry" "male" 20 0 0 "A/5. 2151" 8.05 "" "S" +14 0 3 "Andersson, Mr. Anders Johan" "male" 39 1 5 "347082" 31.275 "" "S" +15 0 3 "Vestrom, Miss. Hulda Amanda Adolfina" "female" 14 0 0 "350406" 7.8542 "" "S" +16 1 2 "Hewlett, Mrs. (Mary D Kingcome) " "female" 55 0 0 "248706" 16 "" "S" +17 0 3 "Rice, Master. Eugene" "male" 2 4 1 "382652" 29.125 "" "Q" +18 1 2 "Williams, Mr. Charles Eugene" "male" NA 0 0 "244373" 13 "" "S" +19 0 3 "Vander Planke, Mrs. Julius (Emelia Maria Vandemoortele)" "female" 31 1 0 "345763" 18 "" "S" +20 1 3 "Masselmani, Mrs. Fatima" "female" NA 0 0 "2649" 7.225 "" "C" +21 0 2 "Fynney, Mr. Joseph J" "male" 35 0 0 "239865" 26 "" "S" +22 1 2 "Beesley, Mr. Lawrence" "male" 34 0 0 "248698" 13 "D56" "S" +23 1 3 "McGowan, Miss. Anna \"Annie\"" "female" 15 0 0 "330923" 8.0292 "" "Q" +24 1 1 "Sloper, Mr. William Thompson" "male" 28 0 0 "113788" 35.5 "A6" "S" +25 0 3 "Palsson, Miss. Torborg Danira" "female" 8 3 1 "349909" 21.075 "" "S" +26 1 3 "Asplund, Mrs. Carl Oscar (Selma Augusta Emilia Johansson)" "female" 38 1 5 "347077" 31.3875 "" "S" +27 0 3 "Emir, Mr. Farred Chehab" "male" NA 0 0 "2631" 7.225 "" "C" +28 0 1 "Fortune, Mr. Charles Alexander" "male" 19 3 2 "19950" 263 "C23 C25 C27" "S" +29 1 3 "O'Dwyer, Miss. Ellen \"Nellie\"" "female" NA 0 0 "330959" 7.8792 "" "Q" +30 0 3 "Todoroff, Mr. Lalio" "male" NA 0 0 "349216" 7.8958 "" "S" +31 0 1 "Uruchurtu, Don. Manuel E" "male" 40 0 0 "PC 17601" 27.7208 "" "C" +32 1 1 "Spencer, Mrs. William Augustus (Marie Eugenie)" "female" NA 1 0 "PC 17569" 146.5208 "B78" "C" +33 1 3 "Glynn, Miss. Mary Agatha" "female" NA 0 0 "335677" 7.75 "" "Q" +34 0 2 "Wheadon, Mr. Edward H" "male" 66 0 0 "C.A. 24579" 10.5 "" "S" +35 0 1 "Meyer, Mr. Edgar Joseph" "male" 28 1 0 "PC 17604" 82.1708 "" "C" +36 0 1 "Holverson, Mr. Alexander Oskar" "male" 42 1 0 "113789" 52 "" "S" +37 1 3 "Mamee, Mr. Hanna" "male" NA 0 0 "2677" 7.2292 "" "C" +38 0 3 "Cann, Mr. Ernest Charles" "male" 21 0 0 "A./5. 2152" 8.05 "" "S" +39 0 3 "Vander Planke, Miss. Augusta Maria" "female" 18 2 0 "345764" 18 "" "S" +40 1 3 "Nicola-Yarred, Miss. Jamila" "female" 14 1 0 "2651" 11.2417 "" "C" +41 0 3 "Ahlin, Mrs. Johan (Johanna Persdotter Larsson)" "female" 40 1 0 "7546" 9.475 "" "S" +42 0 2 "Turpin, Mrs. William John Robert (Dorothy Ann Wonnacott)" "female" 27 1 0 "11668" 21 "" "S" +43 0 3 "Kraeff, Mr. Theodor" "male" NA 0 0 "349253" 7.8958 "" "C" +44 1 2 "Laroche, Miss. Simonne Marie Anne Andree" "female" 3 1 2 "SC/Paris 2123" 41.5792 "" "C" +45 1 3 "Devaney, Miss. Margaret Delia" "female" 19 0 0 "330958" 7.8792 "" "Q" +46 0 3 "Rogers, Mr. William John" "male" NA 0 0 "S.C./A.4. 23567" 8.05 "" "S" +47 0 3 "Lennon, Mr. Denis" "male" NA 1 0 "370371" 15.5 "" "Q" +48 1 3 "O'Driscoll, Miss. Bridget" "female" NA 0 0 "14311" 7.75 "" "Q" +49 0 3 "Samaan, Mr. Youssef" "male" NA 2 0 "2662" 21.6792 "" "C" +50 0 3 "Arnold-Franchi, Mrs. Josef (Josefine Franchi)" "female" 18 1 0 "349237" 17.8 "" "S" +51 0 3 "Panula, Master. Juha Niilo" "male" 7 4 1 "3101295" 39.6875 "" "S" +52 0 3 "Nosworthy, Mr. Richard Cater" "male" 21 0 0 "A/4. 39886" 7.8 "" "S" +53 1 1 "Harper, Mrs. Henry Sleeper (Myna Haxtun)" "female" 49 1 0 "PC 17572" 76.7292 "D33" "C" +54 1 2 "Faunthorpe, Mrs. Lizzie (Elizabeth Anne Wilkinson)" "female" 29 1 0 "2926" 26 "" "S" +55 0 1 "Ostby, Mr. Engelhart Cornelius" "male" 65 0 1 "113509" 61.9792 "B30" "C" +56 1 1 "Woolner, Mr. Hugh" "male" NA 0 0 "19947" 35.5 "C52" "S" +57 1 2 "Rugg, Miss. Emily" "female" 21 0 0 "C.A. 31026" 10.5 "" "S" +58 0 3 "Novel, Mr. Mansouer" "male" 28.5 0 0 "2697" 7.2292 "" "C" +59 1 2 "West, Miss. Constance Mirium" "female" 5 1 2 "C.A. 34651" 27.75 "" "S" +60 0 3 "Goodwin, Master. William Frederick" "male" 11 5 2 "CA 2144" 46.9 "" "S" +61 0 3 "Sirayanian, Mr. Orsen" "male" 22 0 0 "2669" 7.2292 "" "C" +62 1 1 "Icard, Miss. Amelie" "female" 38 0 0 "113572" 80 "B28" "" +63 0 1 "Harris, Mr. Henry Birkhardt" "male" 45 1 0 "36973" 83.475 "C83" "S" +64 0 3 "Skoog, Master. Harald" "male" 4 3 2 "347088" 27.9 "" "S" +65 0 1 "Stewart, Mr. Albert A" "male" NA 0 0 "PC 17605" 27.7208 "" "C" +66 1 3 "Moubarek, Master. Gerios" "male" NA 1 1 "2661" 15.2458 "" "C" +67 1 2 "Nye, Mrs. (Elizabeth Ramell)" "female" 29 0 0 "C.A. 29395" 10.5 "F33" "S" +68 0 3 "Crease, Mr. Ernest James" "male" 19 0 0 "S.P. 3464" 8.1583 "" "S" +69 1 3 "Andersson, Miss. Erna Alexandra" "female" 17 4 2 "3101281" 7.925 "" "S" +70 0 3 "Kink, Mr. Vincenz" "male" 26 2 0 "315151" 8.6625 "" "S" +71 0 2 "Jenkin, Mr. Stephen Curnow" "male" 32 0 0 "C.A. 33111" 10.5 "" "S" +72 0 3 "Goodwin, Miss. Lillian Amy" "female" 16 5 2 "CA 2144" 46.9 "" "S" +73 0 2 "Hood, Mr. Ambrose Jr" "male" 21 0 0 "S.O.C. 14879" 73.5 "" "S" +74 0 3 "Chronopoulos, Mr. Apostolos" "male" 26 1 0 "2680" 14.4542 "" "C" +75 1 3 "Bing, Mr. Lee" "male" 32 0 0 "1601" 56.4958 "" "S" +76 0 3 "Moen, Mr. Sigurd Hansen" "male" 25 0 0 "348123" 7.65 "F G73" "S" +77 0 3 "Staneff, Mr. Ivan" "male" NA 0 0 "349208" 7.8958 "" "S" +78 0 3 "Moutal, Mr. Rahamin Haim" "male" NA 0 0 "374746" 8.05 "" "S" +79 1 2 "Caldwell, Master. Alden Gates" "male" 0.83 0 2 "248738" 29 "" "S" +80 1 3 "Dowdell, Miss. Elizabeth" "female" 30 0 0 "364516" 12.475 "" "S" +81 0 3 "Waelens, Mr. Achille" "male" 22 0 0 "345767" 9 "" "S" +82 1 3 "Sheerlinck, Mr. Jan Baptist" "male" 29 0 0 "345779" 9.5 "" "S" +83 1 3 "McDermott, Miss. Brigdet Delia" "female" NA 0 0 "330932" 7.7875 "" "Q" +84 0 1 "Carrau, Mr. Francisco M" "male" 28 0 0 "113059" 47.1 "" "S" +85 1 2 "Ilett, Miss. Bertha" "female" 17 0 0 "SO/C 14885" 10.5 "" "S" +86 1 3 "Backstrom, Mrs. Karl Alfred (Maria Mathilda Gustafsson)" "female" 33 3 0 "3101278" 15.85 "" "S" +87 0 3 "Ford, Mr. William Neal" "male" 16 1 3 "W./C. 6608" 34.375 "" "S" +88 0 3 "Slocovski, Mr. Selman Francis" "male" NA 0 0 "SOTON/OQ 392086" 8.05 "" "S" +89 1 1 "Fortune, Miss. Mabel Helen" "female" 23 3 2 "19950" 263 "C23 C25 C27" "S" +90 0 3 "Celotti, Mr. Francesco" "male" 24 0 0 "343275" 8.05 "" "S" +91 0 3 "Christmann, Mr. Emil" "male" 29 0 0 "343276" 8.05 "" "S" +92 0 3 "Andreasson, Mr. Paul Edvin" "male" 20 0 0 "347466" 7.8542 "" "S" +93 0 1 "Chaffee, Mr. Herbert Fuller" "male" 46 1 0 "W.E.P. 5734" 61.175 "E31" "S" +94 0 3 "Dean, Mr. Bertram Frank" "male" 26 1 2 "C.A. 2315" 20.575 "" "S" +95 0 3 "Coxon, Mr. Daniel" "male" 59 0 0 "364500" 7.25 "" "S" +96 0 3 "Shorney, Mr. Charles Joseph" "male" NA 0 0 "374910" 8.05 "" "S" +97 0 1 "Goldschmidt, Mr. George B" "male" 71 0 0 "PC 17754" 34.6542 "A5" "C" +98 1 1 "Greenfield, Mr. William Bertram" "male" 23 0 1 "PC 17759" 63.3583 "D10 D12" "C" +99 1 2 "Doling, Mrs. John T (Ada Julia Bone)" "female" 34 0 1 "231919" 23 "" "S" +100 0 2 "Kantor, Mr. Sinai" "male" 34 1 0 "244367" 26 "" "S" +101 0 3 "Petranec, Miss. Matilda" "female" 28 0 0 "349245" 7.8958 "" "S" +102 0 3 "Petroff, Mr. Pastcho (\"Pentcho\")" "male" NA 0 0 "349215" 7.8958 "" "S" +103 0 1 "White, Mr. Richard Frasar" "male" 21 0 1 "35281" 77.2875 "D26" "S" +104 0 3 "Johansson, Mr. Gustaf Joel" "male" 33 0 0 "7540" 8.6542 "" "S" +105 0 3 "Gustafsson, Mr. Anders Vilhelm" "male" 37 2 0 "3101276" 7.925 "" "S" +106 0 3 "Mionoff, Mr. Stoytcho" "male" 28 0 0 "349207" 7.8958 "" "S" +107 1 3 "Salkjelsvik, Miss. Anna Kristine" "female" 21 0 0 "343120" 7.65 "" "S" +108 1 3 "Moss, Mr. Albert Johan" "male" NA 0 0 "312991" 7.775 "" "S" +109 0 3 "Rekic, Mr. Tido" "male" 38 0 0 "349249" 7.8958 "" "S" +110 1 3 "Moran, Miss. Bertha" "female" NA 1 0 "371110" 24.15 "" "Q" +111 0 1 "Porter, Mr. Walter Chamberlain" "male" 47 0 0 "110465" 52 "C110" "S" +112 0 3 "Zabour, Miss. Hileni" "female" 14.5 1 0 "2665" 14.4542 "" "C" +113 0 3 "Barton, Mr. David John" "male" 22 0 0 "324669" 8.05 "" "S" +114 0 3 "Jussila, Miss. Katriina" "female" 20 1 0 "4136" 9.825 "" "S" +115 0 3 "Attalah, Miss. Malake" "female" 17 0 0 "2627" 14.4583 "" "C" +116 0 3 "Pekoniemi, Mr. Edvard" "male" 21 0 0 "STON/O 2. 3101294" 7.925 "" "S" +117 0 3 "Connors, Mr. Patrick" "male" 70.5 0 0 "370369" 7.75 "" "Q" +118 0 2 "Turpin, Mr. William John Robert" "male" 29 1 0 "11668" 21 "" "S" +119 0 1 "Baxter, Mr. Quigg Edmond" "male" 24 0 1 "PC 17558" 247.5208 "B58 B60" "C" +120 0 3 "Andersson, Miss. Ellis Anna Maria" "female" 2 4 2 "347082" 31.275 "" "S" +121 0 2 "Hickman, Mr. Stanley George" "male" 21 2 0 "S.O.C. 14879" 73.5 "" "S" +122 0 3 "Moore, Mr. Leonard Charles" "male" NA 0 0 "A4. 54510" 8.05 "" "S" +123 0 2 "Nasser, Mr. Nicholas" "male" 32.5 1 0 "237736" 30.0708 "" "C" +124 1 2 "Webber, Miss. Susan" "female" 32.5 0 0 "27267" 13 "E101" "S" +125 0 1 "White, Mr. Percival Wayland" "male" 54 0 1 "35281" 77.2875 "D26" "S" +126 1 3 "Nicola-Yarred, Master. Elias" "male" 12 1 0 "2651" 11.2417 "" "C" +127 0 3 "McMahon, Mr. Martin" "male" NA 0 0 "370372" 7.75 "" "Q" +128 1 3 "Madsen, Mr. Fridtjof Arne" "male" 24 0 0 "C 17369" 7.1417 "" "S" +129 1 3 "Peter, Miss. Anna" "female" NA 1 1 "2668" 22.3583 "F E69" "C" +130 0 3 "Ekstrom, Mr. Johan" "male" 45 0 0 "347061" 6.975 "" "S" +131 0 3 "Drazenoic, Mr. Jozef" "male" 33 0 0 "349241" 7.8958 "" "C" +132 0 3 "Coelho, Mr. Domingos Fernandeo" "male" 20 0 0 "SOTON/O.Q. 3101307" 7.05 "" "S" +133 0 3 "Robins, Mrs. Alexander A (Grace Charity Laury)" "female" 47 1 0 "A/5. 3337" 14.5 "" "S" +134 1 2 "Weisz, Mrs. Leopold (Mathilde Francoise Pede)" "female" 29 1 0 "228414" 26 "" "S" +135 0 2 "Sobey, Mr. Samuel James Hayden" "male" 25 0 0 "C.A. 29178" 13 "" "S" +136 0 2 "Richard, Mr. Emile" "male" 23 0 0 "SC/PARIS 2133" 15.0458 "" "C" +137 1 1 "Newsom, Miss. Helen Monypeny" "female" 19 0 2 "11752" 26.2833 "D47" "S" +138 0 1 "Futrelle, Mr. Jacques Heath" "male" 37 1 0 "113803" 53.1 "C123" "S" +139 0 3 "Osen, Mr. Olaf Elon" "male" 16 0 0 "7534" 9.2167 "" "S" +140 0 1 "Giglio, Mr. Victor" "male" 24 0 0 "PC 17593" 79.2 "B86" "C" +141 0 3 "Boulos, Mrs. Joseph (Sultana)" "female" NA 0 2 "2678" 15.2458 "" "C" +142 1 3 "Nysten, Miss. Anna Sofia" "female" 22 0 0 "347081" 7.75 "" "S" +143 1 3 "Hakkarainen, Mrs. Pekka Pietari (Elin Matilda Dolck)" "female" 24 1 0 "STON/O2. 3101279" 15.85 "" "S" +144 0 3 "Burke, Mr. Jeremiah" "male" 19 0 0 "365222" 6.75 "" "Q" +145 0 2 "Andrew, Mr. Edgardo Samuel" "male" 18 0 0 "231945" 11.5 "" "S" +146 0 2 "Nicholls, Mr. Joseph Charles" "male" 19 1 1 "C.A. 33112" 36.75 "" "S" +147 1 3 "Andersson, Mr. August Edvard (\"Wennerstrom\")" "male" 27 0 0 "350043" 7.7958 "" "S" +148 0 3 "Ford, Miss. Robina Maggie \"Ruby\"" "female" 9 2 2 "W./C. 6608" 34.375 "" "S" +149 0 2 "Navratil, Mr. Michel (\"Louis M Hoffman\")" "male" 36.5 0 2 "230080" 26 "F2" "S" +150 0 2 "Byles, Rev. Thomas Roussel Davids" "male" 42 0 0 "244310" 13 "" "S" +151 0 2 "Bateman, Rev. Robert James" "male" 51 0 0 "S.O.P. 1166" 12.525 "" "S" +152 1 1 "Pears, Mrs. Thomas (Edith Wearne)" "female" 22 1 0 "113776" 66.6 "C2" "S" +153 0 3 "Meo, Mr. Alfonzo" "male" 55.5 0 0 "A.5. 11206" 8.05 "" "S" +154 0 3 "van Billiard, Mr. Austin Blyler" "male" 40.5 0 2 "A/5. 851" 14.5 "" "S" +155 0 3 "Olsen, Mr. Ole Martin" "male" NA 0 0 "Fa 265302" 7.3125 "" "S" +156 0 1 "Williams, Mr. Charles Duane" "male" 51 0 1 "PC 17597" 61.3792 "" "C" +157 1 3 "Gilnagh, Miss. Katherine \"Katie\"" "female" 16 0 0 "35851" 7.7333 "" "Q" +158 0 3 "Corn, Mr. Harry" "male" 30 0 0 "SOTON/OQ 392090" 8.05 "" "S" +159 0 3 "Smiljanic, Mr. Mile" "male" NA 0 0 "315037" 8.6625 "" "S" +160 0 3 "Sage, Master. Thomas Henry" "male" NA 8 2 "CA. 2343" 69.55 "" "S" +161 0 3 "Cribb, Mr. John Hatfield" "male" 44 0 1 "371362" 16.1 "" "S" +162 1 2 "Watt, Mrs. James (Elizabeth \"Bessie\" Inglis Milne)" "female" 40 0 0 "C.A. 33595" 15.75 "" "S" +163 0 3 "Bengtsson, Mr. John Viktor" "male" 26 0 0 "347068" 7.775 "" "S" +164 0 3 "Calic, Mr. Jovo" "male" 17 0 0 "315093" 8.6625 "" "S" +165 0 3 "Panula, Master. Eino Viljami" "male" 1 4 1 "3101295" 39.6875 "" "S" +166 1 3 "Goldsmith, Master. Frank John William \"Frankie\"" "male" 9 0 2 "363291" 20.525 "" "S" +167 1 1 "Chibnall, Mrs. (Edith Martha Bowerman)" "female" NA 0 1 "113505" 55 "E33" "S" +168 0 3 "Skoog, Mrs. William (Anna Bernhardina Karlsson)" "female" 45 1 4 "347088" 27.9 "" "S" +169 0 1 "Baumann, Mr. John D" "male" NA 0 0 "PC 17318" 25.925 "" "S" +170 0 3 "Ling, Mr. Lee" "male" 28 0 0 "1601" 56.4958 "" "S" +171 0 1 "Van der hoef, Mr. Wyckoff" "male" 61 0 0 "111240" 33.5 "B19" "S" +172 0 3 "Rice, Master. Arthur" "male" 4 4 1 "382652" 29.125 "" "Q" +173 1 3 "Johnson, Miss. Eleanor Ileen" "female" 1 1 1 "347742" 11.1333 "" "S" +174 0 3 "Sivola, Mr. Antti Wilhelm" "male" 21 0 0 "STON/O 2. 3101280" 7.925 "" "S" +175 0 1 "Smith, Mr. James Clinch" "male" 56 0 0 "17764" 30.6958 "A7" "C" +176 0 3 "Klasen, Mr. Klas Albin" "male" 18 1 1 "350404" 7.8542 "" "S" +177 0 3 "Lefebre, Master. Henry Forbes" "male" NA 3 1 "4133" 25.4667 "" "S" +178 0 1 "Isham, Miss. Ann Elizabeth" "female" 50 0 0 "PC 17595" 28.7125 "C49" "C" +179 0 2 "Hale, Mr. Reginald" "male" 30 0 0 "250653" 13 "" "S" +180 0 3 "Leonard, Mr. Lionel" "male" 36 0 0 "LINE" 0 "" "S" +181 0 3 "Sage, Miss. Constance Gladys" "female" NA 8 2 "CA. 2343" 69.55 "" "S" +182 0 2 "Pernot, Mr. Rene" "male" NA 0 0 "SC/PARIS 2131" 15.05 "" "C" +183 0 3 "Asplund, Master. Clarence Gustaf Hugo" "male" 9 4 2 "347077" 31.3875 "" "S" +184 1 2 "Becker, Master. Richard F" "male" 1 2 1 "230136" 39 "F4" "S" +185 1 3 "Kink-Heilmann, Miss. Luise Gretchen" "female" 4 0 2 "315153" 22.025 "" "S" +186 0 1 "Rood, Mr. Hugh Roscoe" "male" NA 0 0 "113767" 50 "A32" "S" +187 1 3 "O'Brien, Mrs. Thomas (Johanna \"Hannah\" Godfrey)" "female" NA 1 0 "370365" 15.5 "" "Q" +188 1 1 "Romaine, Mr. Charles Hallace (\"Mr C Rolmane\")" "male" 45 0 0 "111428" 26.55 "" "S" +189 0 3 "Bourke, Mr. John" "male" 40 1 1 "364849" 15.5 "" "Q" +190 0 3 "Turcin, Mr. Stjepan" "male" 36 0 0 "349247" 7.8958 "" "S" +191 1 2 "Pinsky, Mrs. (Rosa)" "female" 32 0 0 "234604" 13 "" "S" +192 0 2 "Carbines, Mr. William" "male" 19 0 0 "28424" 13 "" "S" +193 1 3 "Andersen-Jensen, Miss. Carla Christine Nielsine" "female" 19 1 0 "350046" 7.8542 "" "S" +194 1 2 "Navratil, Master. Michel M" "male" 3 1 1 "230080" 26 "F2" "S" +195 1 1 "Brown, Mrs. James Joseph (Margaret Tobin)" "female" 44 0 0 "PC 17610" 27.7208 "B4" "C" +196 1 1 "Lurette, Miss. 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Mary Conover" "female" 16 0 1 "PC 17592" 39.4 "D28" "S" +855 0 2 "Carter, Mrs. Ernest Courtenay (Lilian Hughes)" "female" 44 1 0 "244252" 26 "" "S" +856 1 3 "Aks, Mrs. Sam (Leah Rosen)" "female" 18 0 1 "392091" 9.35 "" "S" +857 1 1 "Wick, Mrs. George Dennick (Mary Hitchcock)" "female" 45 1 1 "36928" 164.8667 "" "S" +858 1 1 "Daly, Mr. Peter Denis " "male" 51 0 0 "113055" 26.55 "E17" "S" +859 1 3 "Baclini, Mrs. Solomon (Latifa Qurban)" "female" 24 0 3 "2666" 19.2583 "" "C" +860 0 3 "Razi, Mr. Raihed" "male" NA 0 0 "2629" 7.2292 "" "C" +861 0 3 "Hansen, Mr. Claus Peter" "male" 41 2 0 "350026" 14.1083 "" "S" +862 0 2 "Giles, Mr. Frederick Edward" "male" 21 1 0 "28134" 11.5 "" "S" +863 1 1 "Swift, Mrs. Frederick Joel (Margaret Welles Barron)" "female" 48 0 0 "17466" 25.9292 "D17" "S" +864 0 3 "Sage, Miss. Dorothy Edith \"Dolly\"" "female" NA 8 2 "CA. 2343" 69.55 "" "S" +865 0 2 "Gill, Mr. John William" "male" 24 0 0 "233866" 13 "" "S" +866 1 2 "Bystrom, Mrs. (Karolina)" "female" 42 0 0 "236852" 13 "" "S" +867 1 2 "Duran y More, Miss. Asuncion" "female" 27 1 0 "SC/PARIS 2149" 13.8583 "" "C" +868 0 1 "Roebling, Mr. Washington Augustus II" "male" 31 0 0 "PC 17590" 50.4958 "A24" "S" +869 0 3 "van Melkebeke, Mr. Philemon" "male" NA 0 0 "345777" 9.5 "" "S" +870 1 3 "Johnson, Master. Harold Theodor" "male" 4 1 1 "347742" 11.1333 "" "S" +871 0 3 "Balkic, Mr. Cerin" "male" 26 0 0 "349248" 7.8958 "" "S" +872 1 1 "Beckwith, Mrs. Richard Leonard (Sallie Monypeny)" "female" 47 1 1 "11751" 52.5542 "D35" "S" +873 0 1 "Carlsson, Mr. Frans Olof" "male" 33 0 0 "695" 5 "B51 B53 B55" "S" +874 0 3 "Vander Cruyssen, Mr. Victor" "male" 47 0 0 "345765" 9 "" "S" +875 1 2 "Abelson, Mrs. Samuel (Hannah Wizosky)" "female" 28 1 0 "P/PP 3381" 24 "" "C" +876 1 3 "Najib, Miss. Adele Kiamie \"Jane\"" "female" 15 0 0 "2667" 7.225 "" "C" +877 0 3 "Gustafsson, Mr. Alfred Ossian" "male" 20 0 0 "7534" 9.8458 "" "S" +878 0 3 "Petroff, Mr. Nedelio" "male" 19 0 0 "349212" 7.8958 "" "S" +879 0 3 "Laleff, Mr. Kristo" "male" NA 0 0 "349217" 7.8958 "" "S" +880 1 1 "Potter, Mrs. Thomas Jr (Lily Alexenia Wilson)" "female" 56 0 1 "11767" 83.1583 "C50" "C" +881 1 2 "Shelley, Mrs. William (Imanita Parrish Hall)" "female" 25 0 1 "230433" 26 "" "S" +882 0 3 "Markun, Mr. Johann" "male" 33 0 0 "349257" 7.8958 "" "S" +883 0 3 "Dahlberg, Miss. Gerda Ulrika" "female" 22 0 0 "7552" 10.5167 "" "S" +884 0 2 "Banfield, Mr. Frederick James" "male" 28 0 0 "C.A./SOTON 34068" 10.5 "" "S" +885 0 3 "Sutehall, Mr. Henry Jr" "male" 25 0 0 "SOTON/OQ 392076" 7.05 "" "S" +886 0 3 "Rice, Mrs. William (Margaret Norton)" "female" 39 0 5 "382652" 29.125 "" "Q" +887 0 2 "Montvila, Rev. Juozas" "male" 27 0 0 "211536" 13 "" "S" +888 1 1 "Graham, Miss. Margaret Edith" "female" 19 0 0 "112053" 30 "B42" "S" +889 0 3 "Johnston, Miss. Catherine Helen \"Carrie\"" "female" NA 1 2 "W./C. 6607" 23.45 "" "S" +890 1 1 "Behr, Mr. Karl Howell" "male" 26 0 0 "111369" 30 "C148" "C" +891 0 3 "Dooley, Mr. Patrick" "male" 32 0 0 "370376" 7.75 "" "Q" diff --git a/datasets.cabal b/datasets.cabal --- a/datasets.cabal +++ b/datasets.cabal @@ -1,18 +1,22 @@ Name: datasets -Version: 0.2.5 +Version: 0.3.0 Synopsis: Classical data sets for statistics and machine learning Description: Classical machine learning and statistics datasets from the UCI Machine Learning Repository and other sources. . - The datasets package defines two different kinds of datasets: + The @datasets@ package defines two different kinds of datasets: . * small data sets which are directly (or indirectly with `file-embed`) embedded in the package as pure values and do not require network or IO to download the data set. This includes Iris, Anscombe and OldFaithful. . * other data sets which need to be fetched over the network with - `Numeric.Datasets.getDataset` and are cached in a local temporary directory. + `Numeric.Datasets.getDataset` and are cached in a local temporary directory. . + The @datafiles/@ directory of this package includes copies of a few famous datasets, such as Titanic, Nightingale and Michelson. + . + Example : + . > import Numeric.Datasets (getDataset) > import Numeric.Datasets.Iris (iris) > import Numeric.Datasets.Abalone (abalone) @@ -29,28 +33,29 @@ License: MIT License-file: LICENSE Author: Tom Nielsen -Maintainer: Tom Nielsen +Maintainer: Marco Zocca build-type: Simple Cabal-Version: >= 1.10 -homepage: https://github.com/diffusionkinetics/open/datasets -bug-reports: https://github.com/diffusionkinetics/open/issues +homepage: https://github.com/DataHaskell/dh-core +bug-reports: https://github.com/DataHaskell/dh-core/issues category: Statistics, Machine Learning, Data Mining, Data -Tested-With: GHC == 7.10.2, GHC == 7.10.3, GHC == 8.0.1 +Tested-With: GHC == 7.10.2, GHC == 7.10.3, GHC == 8.0.1, GHC == 8.4.3 extra-source-files: changelog.md datafiles/iris.data datafiles/michelson.json datafiles/nightingale.json + datafiles/titanic2_full.tsv datafiles/netflix/training/mv_0000001.txt datafiles/netflix/test/qualifying.txt - datafiles/netflix/movies/movie_titles.txt + datafiles/netflix/movies/movie_titles.txt source-repository head type: git - location: https://github.com/diffusionkinetics/open + location: https://github.com/DataHaskell/dh-core/datasets Library - ghc-options: -Wall + ghc-options: -Wall -fno-warn-unused-imports hs-source-dirs: src other-extensions: TemplateHaskell default-language: Haskell2010 @@ -69,28 +74,32 @@ , Numeric.Datasets.Gapminder , Numeric.Datasets.Iris , Numeric.Datasets.Michelson + , Numeric.Datasets.Mushroom , Numeric.Datasets.Nightingale , Numeric.Datasets.Quakes , Numeric.Datasets.States , Numeric.Datasets.Sunspots + , Numeric.Datasets.Titanic , Numeric.Datasets.UN , Numeric.Datasets.Vocabulary , Numeric.Datasets.Wine , Numeric.Datasets.WineQuality - , Numeric.Datasets.Netflix + , Numeric.Datasets.Netflix Build-depends: - base >= 4.6 && < 5 - , aeson - , attoparsec >= 0.13 - , bytestring - , cassava - , directory - , file-embed - , filepath - , hashable - , microlens - , stringsearch - , text - , time - , vector - , wreq + base >= 4.6 && < 5 + , aeson + , attoparsec >= 0.13 + , bytestring + , cassava + , data-default-class + , directory + , file-embed + , filepath + , hashable + , microlens + , req >= 1.0.0 + , stringsearch + , text + , time + , vector + -- , wreq diff --git a/src/Numeric/Datasets.hs b/src/Numeric/Datasets.hs --- a/src/Numeric/Datasets.hs +++ b/src/Numeric/Datasets.hs @@ -1,24 +1,45 @@ {- | -The datasets package defines two different kinds of datasets: +The @datasets@ package defines three different kinds of datasets: -* small data sets which are directly (or indirectly with `file-embed`) - embedded in the package as pure values and do not require - network or IO to download the data set. +* Tiny datasets (up to a few tens of rows) are embedded as part of the library source code, as lists of values. -* other data sets which need to be fetched over the network with - `getDataset` and are cached in a local temporary directory +* Small data sets are embedded indirectly (via @file-embed@) + in the package as pure values and do not require IO + to be downloaded (i.e. the data is loaded and parsed at compile time). + +* Larger data sets which need to be fetched over the network + and are cached in a local temporary directory for subsequent use. -This module defines the `getDataset` function for fetching datasets -and utilies for defining new data sets. It is only necessary to import -this module when using fetched data sets. Embedded data sets can be -imported directly. +This module defines the 'getDataset' function for fetching datasets +and utilities for defining new data sets and modifying their options. +It is only necessary to import this module when using fetched data sets. +Embedded data sets can be used directly. +Please refer to the dataset modules for examples. + -} -{-# LANGUAGE OverloadedStrings, GADTs #-} +{-# LANGUAGE OverloadedStrings, GADTs, DataKinds #-} +-- {-# OPTIONS_GHC -fno-warn-unused-imports #-} -module Numeric.Datasets where +module Numeric.Datasets (getDataset, Dataset(..), Source(..), + -- * Parsing datasets + readDataset, ReadAs(..), csvRecord, + -- * Defining datasets + csvDataset, csvHdrDataset, csvHdrDatasetSep, csvDatasetSkipHdr, + jsonDataset, + -- ** Dataset options + withPreprocess, withTempDir, + -- ** Preprocessing functions + -- + -- | These functions are to be used as first argument of 'withPreprocess' in order to improve the quality of the parser inputs. + dropLines, fixedWidthToCSV, removeEscQuotes, fixAmericanDecimals, + -- ** Helper functions + parseReadField, parseDashToCamelField, + yearToUTCTime, + -- * Dataset source URLs + umassMLDB, uciMLDB) where import Data.Csv import System.FilePath @@ -30,11 +51,12 @@ import Data.Aeson as JSON import Control.Applicative import Data.Time -import Data.Char (ord) -import qualified Network.Wreq as Wreq -import Lens.Micro ((^.)) +-- import qualified Network.Wreq as Wreq +import Data.Default.Class (Default(..)) +import Network.HTTP.Req (req, runReq, Url, (/:), http, https, Scheme(..), LbsResponse, lbsResponse, responseBody, GET(..), NoReqBody(..), HttpMethod(..)) +-- import Lens.Micro ((^.)) -import Data.Char (toUpper) +import Data.Char (ord, toUpper) import Text.Read (readMaybe) import Data.Maybe (fromMaybe) import Data.ByteString.Char8 (unpack) @@ -43,17 +65,37 @@ -- * Using datasets --- |Load a dataset, using the system temporary directory as a cache -getDataset :: Dataset a -> IO [a] +-- | Load a dataset, using the system temporary directory as a cache +getDataset :: Dataset h a -> IO [a] getDataset ds = do - dir <- case temporaryDirectory ds of - Nothing -> getTemporaryDirectory - Just tdir -> return tdir + dir <- tempDirForDataset ds bs <- fmap (fromMaybe id $ preProcess ds) $ getFileFromSource dir $ source ds return $ readDataset (readAs ds) bs --- |Read a ByteString into a Haskell value -readDataset :: ReadAs a -> BL.ByteString -> [a] +-- | Get a ByteString from the specified Source +getFileFromSource :: + FilePath -- ^ Cache directory + -> Source h + -> IO BL.ByteString +getFileFromSource cacheDir (URL url) = do + createDirectoryIfMissing True cacheDir + let fnm = cacheDir "ds" <> show (hash $ show url) + ex <- doesFileExist fnm + if ex + then BL.readFile fnm + else do + rsp <- runReq def $ req GET url NoReqBody lbsResponse mempty + let bs = responseBody rsp + BL.writeFile fnm bs + return bs +getFileFromSource _ (File fnm) = + BL.readFile fnm + +-- | Parse a ByteString into a list of Haskell values +readDataset :: + ReadAs a -- ^ How to parse the raw data string + -> BL.ByteString -- ^ The data string + -> [a] readDataset JSON bs = case JSON.decode bs of Just theData -> theData @@ -67,95 +109,100 @@ Right (_,theData) -> V.toList theData Left err -> error err -data Source = URL String +tempDirForDataset :: Dataset h a -> IO FilePath +tempDirForDataset ds = + case temporaryDirectory ds of + Nothing -> getTemporaryDirectory + Just tdir -> return tdir --- | A dataset is a record telling us how to load the data +-- | A 'Dataset' source can be either a URL (for remotely-hosted datasets) or the filepath of a local file. +data Source h = URL (Url h) + | File FilePath -data Dataset a = Dataset - { source :: Source - , temporaryDirectory :: Maybe FilePath - , preProcess :: Maybe (BL.ByteString -> BL.ByteString) +-- | A 'Dataset' contains metadata for loading, caching, preprocessing and parsing data. +data Dataset h a = Dataset + { source :: Source h -- ^ Dataset source + , temporaryDirectory :: Maybe FilePath -- ^ Temporary directory (optional) + , preProcess :: Maybe (BL.ByteString -> BL.ByteString) -- ^ Dataset preprocessing function (optional) , readAs :: ReadAs a } -- | ReadAs is a datatype to describe data formats that hold data sets - data ReadAs a where JSON :: FromJSON a => ReadAs a CSVRecord :: FromRecord a => HasHeader -> DecodeOptions -> ReadAs a CSVNamedRecord :: FromNamedRecord a => DecodeOptions -> ReadAs a +-- | A CSV record with default decoding options (i.e. columns are separated by commas) csvRecord :: FromRecord a => ReadAs a csvRecord = CSVRecord NoHeader defaultDecodeOptions -- * Defining datasets --- |Define a dataset from a pre-processing function and a source for a CSV file -csvDatasetPreprocess :: FromRecord a => (BL.ByteString -> BL.ByteString) -> Source -> Dataset a -csvDatasetPreprocess preF src = (csvDataset src) { preProcess = Just preF } --- parseCSV preF <$> getFileFromSource cacheDir src +-- | Define a dataset from a source for a CSV file +csvDataset :: FromRecord a => Source h -> Dataset h a +csvDataset src = Dataset src Nothing Nothing csvRecord --- |Define a dataset from a source for a CSV file -csvDataset :: FromRecord a => Source -> Dataset a -csvDataset src = Dataset src Nothing Nothing $ CSVRecord NoHeader defaultDecodeOptions +-- | Define a dataset from a source for a CSV file, skipping the header line +csvDatasetSkipHdr :: FromRecord a => Source h -> Dataset h a +csvDatasetSkipHdr src = Dataset src Nothing Nothing $ CSVRecord HasHeader defaultDecodeOptions + -- |Define a dataset from a source for a CSV file with a known header -csvHdrDataset :: FromNamedRecord a => Source -> Dataset a +csvHdrDataset :: FromNamedRecord a => Source h -> Dataset h a csvHdrDataset src = Dataset src Nothing Nothing $ CSVNamedRecord defaultDecodeOptions -- |Define a dataset from a source for a CSV file with a known header and separator -csvHdrDatasetSep :: FromNamedRecord a => Char -> Source -> Dataset a +csvHdrDatasetSep :: FromNamedRecord a => Char -> Source h -> Dataset h a csvHdrDatasetSep sepc src = Dataset src Nothing Nothing $ CSVNamedRecord defaultDecodeOptions { decDelimiter = fromIntegral (ord sepc)} --- |Define a dataset from a source for a JSON file -- data file must be accessible with HTTP, not HTTPS -jsonDataset :: FromJSON a => Source -> Dataset a +-- | Define a dataset from a source for a JSON file +jsonDataset :: FromJSON a => Source h -> Dataset h a jsonDataset src = Dataset src Nothing Nothing JSON --- | Get a ByteString from the specified Source -getFileFromSource :: FilePath -> Source -> IO (BL.ByteString) -getFileFromSource cacheDir (URL url) = do - createDirectoryIfMissing True cacheDir - let fnm = cacheDir "ds" <> show (hash url) - ex <- doesFileExist fnm - if ex - then BL.readFile fnm - else do - rsp <- Wreq.get url - let bs = rsp ^. Wreq.responseBody - BL.writeFile fnm bs - return bs +-- * Modifying datasets --- * Helper functions for parsing +-- | Include a preprocessing stage to a Dataset: each field in the raw data will be preprocessed with the given function. +withPreprocess :: (BL8.ByteString -> BL8.ByteString) -> Dataset h a -> Dataset h a +withPreprocess preF ds = ds { preProcess = Just preF} --- |Turn dashes to CamlCase +-- | Include a temporary directory for caching the dataset after this has been downloaded one first time. +withTempDir :: FilePath -> Dataset h a -> Dataset h a +withTempDir dir ds = ds { temporaryDirectory = Just dir } + + + +-- * Helper functions for parsing datasets + +-- | Turn dashes to CamelCase dashToCamelCase :: String -> String dashToCamelCase ('-':c:cs) = toUpper c : dashToCamelCase cs dashToCamelCase (c:cs) = c : dashToCamelCase cs dashToCamelCase [] = [] --- | Parse a field, first turning dashes to CamlCase +-- | Parse a field, first turning dashes to CamelCase parseDashToCamelField :: Read a => Field -> Parser a parseDashToCamelField s = case readMaybe (dashToCamelCase $ unpack s) of Just wc -> pure wc Nothing -> fail "unknown" --- | parse somethign, based on its read instance +-- | Parse a CSV field, based on its read instance parseReadField :: Read a => Field -> Parser a parseReadField s = case readMaybe (unpack s) of Just wc -> pure wc Nothing -> fail "unknown" --- |Drop lines from a bytestring +-- | Drop lines from a bytestring dropLines :: Int -> BL.ByteString -> BL.ByteString dropLines 0 s = s dropLines n s = dropLines (n-1) $ BL.tail $ BL8.dropWhile (/='\n') s --- | Turn US-style decimals starting with a period (e.g. .2) into something Haskell can parse (e.g. 0.2) +-- | Turn US-style decimals starting with a period (e.g. .2) into something @cassava@ can parse (e.g. 0.2) fixAmericanDecimals :: BL.ByteString -> BL.ByteString fixAmericanDecimals = replace ",." (",0."::BL.ByteString) @@ -171,9 +218,13 @@ chomp (c:cs) = c:cs chomp [] = [] +-- | Filter out escaped double quotes from a field +removeEscQuotes :: BL8.ByteString -> BL8.ByteString +removeEscQuotes = BL8.filter (/= '\"') + -- * Helper functions for data analysis --- | convert a fractional year to UTCTime with second-level precision (due to not taking into account leap seconds) +-- | Convert a fractional year to UTCTime with second-level precision (due to not taking into account leap seconds) yearToUTCTime :: Double -> UTCTime yearToUTCTime yearDbl = let (yearn,yearFrac) = properFraction yearDbl @@ -182,3 +233,20 @@ day = addDays dayn dayYearBegin dt = secondsToDiffTime $ round $ dayFrac * 86400 in UTCTime day dt + + + +-- * URLs + +-- | The UMass machine learning database +-- +-- +umassMLDB :: Url 'Http +umassMLDB = http "mlr.cs.umass.edu" /: "ml" /: "machine-learning-databases" + +-- | The UCI machine learning database +-- +-- | +uciMLDB :: Url 'Https +uciMLDB = https "archive.ics.uci.edu" /: "ml" /: "machine-learning-databases" + diff --git a/src/Numeric/Datasets/Abalone.hs b/src/Numeric/Datasets/Abalone.hs --- a/src/Numeric/Datasets/Abalone.hs +++ b/src/Numeric/Datasets/Abalone.hs @@ -1,4 +1,4 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} {-| @@ -14,9 +14,10 @@ import Data.Csv import GHC.Generics +import Network.HTTP.Req ((/:), http, Scheme(..)) data Sex = M | F | I - deriving (Show, Read, Eq, Generic) + deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField Sex where parseField = parseReadField @@ -35,5 +36,6 @@ instance FromRecord Abalone -abalone :: Dataset Abalone -abalone = csvDataset $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/abalone/abalone.data" +abalone :: Dataset 'Http Abalone +abalone = csvDataset $ URL $ umassMLDB /: "abalone" /: "abalone.data" + diff --git a/src/Numeric/Datasets/Adult.hs b/src/Numeric/Datasets/Adult.hs --- a/src/Numeric/Datasets/Adult.hs +++ b/src/Numeric/Datasets/Adult.hs @@ -1,4 +1,4 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} {-| @@ -16,10 +16,11 @@ import GHC.Generics import Control.Applicative import Data.Text (Text, strip) +import Network.HTTP.Req ((/:), Scheme(..)) data WorkClass = Private | SelfEmpNotInc | SelfEmpInc | FederalGov | LocalGov | StateGov | WithoutPay | NeverWorked - deriving (Show, Read, Eq, Generic) + deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField WorkClass where parseField = parseDashToCamelField @@ -27,41 +28,40 @@ data MaritalStatus = MarriedCivSpouse | Divorced | NeverMarried | Separated | Widowed | MarriedSpouseAbsent | MarriedAFSpouse - deriving (Show, Read, Eq, Generic) + deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField MaritalStatus where -- parseField "Married-AF-spouse" = pure MarriedAFSpouse - parseField s = parseDashToCamelField s + parseField = parseDashToCamelField data Occupation = TechSupport | CraftRepair | OtherService | Sales | ExecManagerial | ProfSpecialty | HandlersCleaners | MachineOpInspct | AdmClerical | FarmingFishing | TransportMoving | PrivHouseServ | ProtectiveServ | ArmedForces - deriving (Show, Read, Eq, Generic) + deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField Occupation where --- parseField "ArmedForces" = pure ArmedForces - parseField s = parseDashToCamelField s + parseField = parseDashToCamelField data Relationship = Wife | OwnChild | Husband | NotInFamily | OtherRelative | Unmarried - deriving (Show, Read, Eq, Generic) + deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField Relationship where - parseField s = parseDashToCamelField s + parseField = parseDashToCamelField data Race = White | AsianPacIslander | AmerIndianEskimo | Other | Black - deriving (Show, Read, Eq, Generic) + deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField Race where - parseField s = parseDashToCamelField s + parseField = parseDashToCamelField data Sex = Female | Male - deriving (Show, Read, Eq, Generic) + deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField Sex where - parseField s = parseDashToCamelField s + parseField = parseDashToCamelField data Income = GT50K | LE50K - deriving (Show, Read, Eq, Generic) + deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField Income where parseField " >50K" = pure GT50K @@ -92,11 +92,13 @@ instance FromRecord Adult where parseRecord v = Adult <$> v .! 0 <*> (v.! 1 <|> return Nothing) <*> v.!2 <*> (strip <$> v.!3) - <*> v.!4 <*> v.!5<*> (v.!6 <|> return Nothing) <*> v.!7 <*> v.!8 - <*> v.!9 <*> v.!10 <*> v.!11 <*> v.!12<*> v.!13<*> v.!14 + <*> v.!4 <*> v.!5 <*> (v.!6 <|> return Nothing) <*> v.!7 <*> v.!8 + <*> v.!9 <*> v.!10 <*> v.!11 <*> v.!12 <*> v.!13 <*> v.!14 -adult :: Dataset Adult -adult = csvDataset $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/adult/adult.data" +adult :: Dataset 'Http Adult +adult = csvDataset $ URL $ umassMLDB /: "adult" /: "adult.data" -adultTestSet :: Dataset Adult -adultTestSet = csvDatasetPreprocess (dropLines 1) $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/adult/adult.test" +adultTestSet :: Dataset 'Http Adult +adultTestSet = withPreprocess (dropLines 1) $ csvDataset $ URL $ umassMLDB /: "adult" /: "adult.test" + +-- "http://mlr.cs.umass.edu/ml/machine-learning-databases/adult/adult.test" diff --git a/src/Numeric/Datasets/BostonHousing.hs b/src/Numeric/Datasets/BostonHousing.hs --- a/src/Numeric/Datasets/BostonHousing.hs +++ b/src/Numeric/Datasets/BostonHousing.hs @@ -1,4 +1,5 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} +{-# OPTIONS_GHC -fno-warn-unused-imports #-} {-| @@ -17,6 +18,7 @@ import Data.Csv import GHC.Generics import Control.Applicative +import Network.HTTP.Req ((/:), http, Scheme(..)) data BostonHousing = BostonHousing @@ -56,7 +58,7 @@ intToBool 0 = False intToBool 1 = True intToBool _ = error "intToBool" -bostonHousing :: Dataset BostonHousing -bostonHousing = csvDatasetPreprocess - fixedWidthToCSV - $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/housing/housing.data" + +bostonHousing :: Dataset 'Http BostonHousing +bostonHousing = withPreprocess fixedWidthToCSV $ + csvDataset $ URL $ umassMLDB /: "housing" /: "housing.data" diff --git a/src/Numeric/Datasets/BreastCancerWisconsin.hs b/src/Numeric/Datasets/BreastCancerWisconsin.hs --- a/src/Numeric/Datasets/BreastCancerWisconsin.hs +++ b/src/Numeric/Datasets/BreastCancerWisconsin.hs @@ -1,4 +1,4 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} {-| @@ -15,11 +15,11 @@ import Data.Csv import GHC.Generics import Control.Applicative - +import Network.HTTP.Req ((/:), Scheme(..)) -data Diagnosis = Malignant | Benign deriving (Show, Read, Eq, Generic) +data Diagnosis = Malignant | Benign deriving (Show, Read, Eq, Generic, Bounded, Enum) -data Prognosis = Recurrent | Nonrecurrent deriving (Show, Read, Eq, Generic) +data Prognosis = Recurrent | Nonrecurrent deriving (Show, Read, Eq, Generic, Bounded, Enum) intToDiagnosis :: Int -> Diagnosis intToDiagnosis 2 = Benign @@ -43,9 +43,9 @@ instance FromRecord BreastCancerEntry where parseRecord v = BreastCancerEntry <$> v .! 0 <*> v .! 1 <*> v .! 2 <*> v .! 3 <*> v .! 4 <*> v .! 5 <*> (v .! 6 <|> return Nothing) <*> v .! 7 <*> v .! 8 <*> v .! 9 <*> (intToDiagnosis <$> v .! 10) -breastCancerDatabase :: Dataset BreastCancerEntry +breastCancerDatabase :: Dataset 'Http BreastCancerEntry breastCancerDatabase = csvDataset - $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/breast-cancer-wisconsin/breast-cancer-wisconsin.data" + $ URL $ umassMLDB /: "breast-cancer-wisconsin" /: "breast-cancer-wisconsin.data" data DiagnosticBreastCancer = DiagnosticBreastCancer { diagnosticID :: Int @@ -90,10 +90,10 @@ instance FromRecord CellFeatures where parseRecord v = CellFeatures <$> v .! 2 <*> v .! 3 <*> v .! 4 <*> v .! 5 <*> v .! 6 <*> v .! 7 <*> v .! 8 <*> v .! 9 <*> v .! 10 -diagnosticBreastCancer :: Dataset DiagnosticBreastCancer +diagnosticBreastCancer :: Dataset 'Http DiagnosticBreastCancer diagnosticBreastCancer = csvDataset - $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/breast-cancer-wisconsin/wdbc.data" + $ URL $ umassMLDB /: "breast-cancer-wisconsin" /: "wdbc.data" -prognosticBreastCancer :: Dataset PrognosticBreastCancer +prognosticBreastCancer :: Dataset 'Http PrognosticBreastCancer prognosticBreastCancer = csvDataset - $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/breast-cancer-wisconsin/wpbc.data" + $ URL $ umassMLDB /: "breast-cancer-wisconsin" /: "wpbc.data" diff --git a/src/Numeric/Datasets/CO2.hs b/src/Numeric/Datasets/CO2.hs --- a/src/Numeric/Datasets/CO2.hs +++ b/src/Numeric/Datasets/CO2.hs @@ -1,4 +1,4 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} {-| @@ -17,14 +17,16 @@ import Data.Csv import GHC.Generics +import Network.HTTP.Req ((/:), https, Scheme(..)) data CO2 = CO2 { time :: Double - , co2 :: Double + , value :: Double } deriving (Show, Read, Generic) instance FromNamedRecord CO2 -maunaLoaCO2 :: Dataset CO2 +maunaLoaCO2 :: Dataset 'Https CO2 maunaLoaCO2 = csvHdrDataset - $ URL "http://vincentarelbundock.github.io/Rdatasets/csv/datasets/co2.csv" + $ URL $ https "raw.githubusercontent.com" /: "vincentarelbundock" /: "Rdatasets" /: "master" /: "csv" /: "datasets" /: "CO2.csv" + diff --git a/src/Numeric/Datasets/Car.hs b/src/Numeric/Datasets/Car.hs --- a/src/Numeric/Datasets/Car.hs +++ b/src/Numeric/Datasets/Car.hs @@ -1,4 +1,5 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} +{-# OPTIONS_GHC -fno-warn-unused-imports #-} {-| @@ -15,8 +16,9 @@ import Data.Csv import GHC.Generics import Control.Applicative +import Network.HTTP.Req ((/:), http, Scheme(..)) -data RelScore = Low | Med | High | VeryHigh deriving (Show, Read, Eq, Generic) +data RelScore = Low | Med | High | VeryHigh deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField RelScore where parseField "vhigh" = pure VeryHigh @@ -25,7 +27,7 @@ parseField "low" = pure Low parseField _ = fail "unknown relative score" -data RelSize = Small | Medium | Big deriving (Show, Read, Eq, Generic) +data RelSize = Small | Medium | Big deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField RelSize where parseField "small" = pure Small @@ -33,7 +35,7 @@ parseField "big" = pure Big parseField _ = fail "unknown relative size" -data Acceptability = Unacceptable | Acceptable | Good | VeryGood deriving (Show, Read, Eq, Generic) +data Acceptability = Unacceptable | Acceptable | Good | VeryGood deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField Acceptability where parseField "unacc" = pure Unacceptable @@ -64,6 +66,6 @@ instance FromRecord Car -car :: Dataset Car +car :: Dataset 'Http Car car = csvDataset - $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/car/car.data" + $ URL $ umassMLDB /: "car" /: "car.data" diff --git a/src/Numeric/Datasets/Coal.hs b/src/Numeric/Datasets/Coal.hs --- a/src/Numeric/Datasets/Coal.hs +++ b/src/Numeric/Datasets/Coal.hs @@ -1,5 +1,6 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} -{-# LANGUAGE GADTs, QuasiQuotes, ViewPatterns, FlexibleContexts #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} +-- {-# LANGUAGE GADTs, QuasiQuotes, ViewPatterns, FlexibleContexts #-} +-- {-# OPTIONS_GHC -fno-warn-unused-imports #-} {-| @@ -17,15 +18,16 @@ import Data.Csv import GHC.Generics -import Control.Applicative +-- import Control.Applicative +import Network.HTTP.Req ((/:), http, Scheme(..)) -data Coal = Coal +newtype Coal = Coal { date :: Double } deriving (Show, Read, Generic) instance FromRecord Coal where parseRecord v = Coal <$> v .! 1 -coal :: Dataset Coal -coal = let src = URL "http://vincentarelbundock.github.io/Rdatasets/csv/boot/coal.csv" +coal :: Dataset 'Http Coal +coal = let src = URL $ http "vincentarelbundock.github.io" /: "Rdatasets" /: "csv" /: "boot" /: "coal.csv" in Dataset src Nothing Nothing $ CSVRecord HasHeader defaultDecodeOptions diff --git a/src/Numeric/Datasets/Gapminder.hs b/src/Numeric/Datasets/Gapminder.hs --- a/src/Numeric/Datasets/Gapminder.hs +++ b/src/Numeric/Datasets/Gapminder.hs @@ -1,4 +1,5 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} +{-# OPTIONS_GHC -fno-warn-unused-imports #-} {-| @@ -18,6 +19,7 @@ import GHC.Generics import Control.Applicative import Data.Text (Text) +import Network.HTTP.Req ((/:), https, Scheme(..)) data Gapminder = Gapminder { country :: Text @@ -39,6 +41,6 @@ where roundIt :: Double -> Integer roundIt = round -gapminder :: Dataset Gapminder +gapminder :: Dataset 'Https Gapminder gapminder = csvHdrDataset - $ URL "https://raw.githubusercontent.com/plotly/datasets/master/gapminderDataFiveYear.csv" + $ URL $ https "raw.githubusercontent.com" /: "plotly" /: "datasets" /: "master" /: "gapminderDataFiveYear.csv" diff --git a/src/Numeric/Datasets/Mushroom.hs b/src/Numeric/Datasets/Mushroom.hs new file mode 100644 --- /dev/null +++ b/src/Numeric/Datasets/Mushroom.hs @@ -0,0 +1,362 @@ +{-# LANGUAGE DeriveGeneric, OverloadedStrings, LambdaCase, DataKinds #-} + +{- | +Mushroom data set + +UCI ML Repository link + +This data set includes descriptions of hypothetical samples corresponding to 23 species of gilled mushrooms in the Agaricus and Lepiota Family. Each species is identified as definitely edible, definitely poisonous, or of unknown edibility and not recommended. This latter class was combined with the poisonous one. + + +Attribute Information: + +All the attributes are discrete (categorical), and attribute 11 ("stalk-root") lacks some entries. The 'classification' attribute has been mapped to a Boolean value (where edible = True). + +0. classification: poisonous=p, edible=e + +1. cap-shape: bell=b,conical=c,convex=x,flat=f, knobbed=k,sunken=s +2. cap-surface: fibrous=f,grooves=g,scaly=y,smooth=s +3. cap-color: brown=n,buff=b,cinnamon=c,gray=g,green=r, pink=p,purple=u,red=e,white=w,yellow=y +4. bruises?: bruises=t,no=f +5. odor: almond=a,anise=l,creosote=c,fishy=y,foul=f, musty=m,none=n,pungent=p,spicy=s +6. gill-attachment: attached=a,descending=d,free=f,notched=n +7. gill-spacing: close=c,crowded=w,distant=d +8. gill-size: broad=b,narrow=n +9. gill-color: black=k,brown=n,buff=b,chocolate=h,gray=g, green=r,orange=o,pink=p,purple=u,red=e, white=w,yellow=y +10. stalk-shape: enlarging=e,tapering=t +11. stalk-root: bulbous=b,club=c,cup=u,equal=e, rhizomorphs=z,rooted=r,missing=? +12. stalk-surface-above-ring: fibrous=f,scaly=y,silky=k,smooth=s +13. stalk-surface-below-ring: fibrous=f,scaly=y,silky=k,smooth=s +14. stalk-color-above-ring: brown=n,buff=b,cinnamon=c,gray=g,orange=o, pink=p,red=e,white=w,yellow=y +15. stalk-color-below-ring: brown=n,buff=b,cinnamon=c,gray=g,orange=o, pink=p,red=e,white=w,yellow=y +16. veil-type: partial=p,universal=u +17. veil-color: brown=n,orange=o,white=w,yellow=y +18. ring-number: none=n,one=o,two=t +19. ring-type: cobwebby=c,evanescent=e,flaring=f,large=l, none=n,pendant=p,sheathing=s,zone=z +20. spore-print-color: black=k,brown=n,buff=b,chocolate=h,green=r, orange=o,purple=u,white=w,yellow=y +21. population: abundant=a,clustered=c,numerous=n, scattered=s,several=v,solitary=y +22. habitat: grasses=g,leaves=l,meadows=m,paths=p, urban=u,waste=w,woods=d + +Example rows: + +p,x,s,n,t,p,f,c,n,k,e,e,s,s,w,w,p,w,o,p,k,s,u + +e,x,s,y,t,a,f,c,b,k,e,c,s,s,w,w,p,w,o,p,n,n,g +-} +module Numeric.Datasets.Mushroom ( + mushroom + , MushroomEntry(..) + , CapShape(..), CapSurface(..), CapColor(..), Odor(..) + , GillAttachment(..), GillSpacing(..), GillSize(..), GillColor(..), StalkShape(..) + , StalkRoot(..), StalkSurfaceAboveRing(..), StalkSurfaceBelowRing(..) + , StalkColorAboveRing(..), StalkColorBelowRing(..), VeilType(..), VeilColor(..) + , RingNumber(..), RingType(..), SporePrintColor(..), Population(..), Habitat(..) + ) where + +import Numeric.Datasets + +import Data.Csv +import GHC.Generics +-- import Control.Applicative +import Network.HTTP.Req ((/:), Scheme(..)) + +data MushroomEntry = MushroomEntry { + edible :: Bool -- ^ Is the mushroom edible? + , capShape :: CapShape + , capSurface :: CapSurface + , capColor :: CapColor + , bruises :: Bool + , odor :: Odor + , gillAttachment :: GillAttachment + , gillSpacing :: GillSpacing + , gillSize :: GillSize + , gillColor :: GillColor + , stalkShape :: StalkShape + , stalkRoot :: Maybe StalkRoot + , stalkSurfaceAboveRing :: StalkSurfaceAboveRing + , stalkSurfaceBelowRing :: StalkSurfaceBelowRing + , stalkColorAboveRing :: StalkColorAboveRing + , stalkColorBelowRing :: StalkColorBelowRing + , veilType :: VeilType + , veilColor :: VeilColor + , ringNumber :: RingNumber + , ringType :: RingType + , sporePrintColor :: SporePrintColor + , population :: Population + , habitat :: Habitat } deriving (Show, Read, Generic) + +instance FromRecord MushroomEntry where + parseRecord v = MushroomEntry <$> + (charToClassification <$> v .! 0) <*> + (charToCapShape <$> v .! 1) <*> + (charToCapSurface <$> v .! 2) <*> + (charToCapColor <$> v .! 3) <*> + (charToBruises <$> v .! 4) <*> + (charToOdor <$> v .! 5) <*> + (charToGillAttachment <$> v .! 6) <*> + (charToGillSpacing <$> v .! 7) <*> + (charToGillSize <$> v .! 8) <*> + (charToGillColor <$> v .! 9) <*> + (charToStalkShape <$> v .! 10) <*> + (charToStalkRoot <$> v .! 11) <*> + (charToSsar <$> v .! 12) <*> + (charToSsbr <$> v .! 13) <*> + (charToScar <$> v .! 14) <*> + (charToScbr <$> v .! 15) <*> + (charToVeilType <$> v .! 16) <*> + (charToVeilColor <$> v .! 17) <*> + (charToRingNumber <$> v .! 18) <*> + (charToRingType <$> v .! 19) <*> + (charToSporePrintColor <$> v .! 20) <*> + (charToPopulation <$> v .! 21) <*> + (charToHabitat <$> v .! 22) + +-- | Whether a mushroom sample is poisonous or edible; the classification tasks involves predicting this label. +-- data Classification = Poisonous | Edible deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToClassification :: Char -> Bool +charToClassification = \case + 'p' -> False + 'e' -> True + x -> error $ unwords ["Unexpected feature value :", show x] + +data CapShape = Bell | Conical | Convex | Flat | Knobbed | Sunken deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToCapShape :: Char -> CapShape +charToCapShape = \case + 'b' -> Bell + 'c' -> Conical + 'x' -> Convex + 'f' -> Flat + 'k' -> Knobbed + 's' -> Sunken + x -> error $ unwords ["Unexpected feature value :", show x] + +data CapSurface = CSFibrous | CSGrooves | CSScaly | CSSmooth deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToCapSurface :: Char -> CapSurface +charToCapSurface = \case + 'f' -> CSFibrous + 'g' -> CSGrooves + 'y' -> CSScaly + 's' -> CSSmooth + x -> error $ unwords ["Unexpected feature value :", show x] + +data CapColor = CCBrown | CCBuff | CCCinnamon | CCGray | CCGreen | CCPink | CCPurple | CCRed | CCWhite | CCYellow deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) + +charToCapColor :: Char -> CapColor +charToCapColor = \case + 'n' -> CCBrown + 'b' -> CCBuff + 'c' -> CCCinnamon + 'g' -> CCGray + 'r' -> CCGreen + 'p' -> CCPink + 'u' -> CCPurple + 'e' -> CCRed + 'w' -> CCWhite + 'y' -> CCYellow + x -> error $ unwords ["Unexpected feature value :", show x] + +charToBruises :: Char -> Bool +charToBruises c = case c of + 't' -> True + 'f' -> False + x -> error $ unwords ["Unexpected feature value :", show x] + +data Odor = Almond | Anise | Creosote | Fishy | Foul | Musty | None | Pungent | Spicy deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToOdor :: Char -> Odor +charToOdor = \case + 'a' -> Almond + 'l' -> Anise + 'c' -> Creosote + 'y' -> Fishy + 'f' -> Foul + 'm' -> Musty + 'n' -> None + 'p' -> Pungent + 's' -> Spicy + x -> error $ unwords ["Unexpected feature value :", show x] + +data GillAttachment = Attached | Descending | Free | Notched deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToGillAttachment :: Char -> GillAttachment +charToGillAttachment = \case + 'a' -> Attached + 'd' -> Descending + 'f' -> Free + 'n' -> Notched + x -> error $ unwords ["Unexpected feature value :", show x] + +data GillSpacing = Close | Crowded | Distant deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToGillSpacing :: Char -> GillSpacing +charToGillSpacing = \case + 'c' -> Close + 'w' -> Crowded + 'd' -> Distant + x -> error $ unwords ["Unexpected feature value :", show x] + +data GillSize = Broad | Narrow deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToGillSize :: Char -> GillSize +charToGillSize = \case + 'b' -> Broad + 'n' -> Narrow + x -> error $ unwords ["Unexpected feature value :", show x] + +data GillColor = GCBlack | GCBrown | GCBuff | GCChocolate | GCGray | GCGreen | GCOrange | GCPink | GCPurple | GCRed | GCWhite | GCYellow deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToGillColor :: Char -> GillColor +charToGillColor = \case + 'k' -> GCBlack + 'n' -> GCBrown + 'b' -> GCBuff + 'h' -> GCChocolate + 'g' -> GCGray + 'r' -> GCGreen + 'o' -> GCOrange + 'p' -> GCPink + 'u' -> GCPurple + 'e' -> GCRed + 'w' -> GCYellow + x -> error $ unwords ["Unexpected feature value :", show x] + +data StalkShape = Enlarging | Tapering deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToStalkShape :: Char -> StalkShape +charToStalkShape = \case + 'e' -> Enlarging + 't' -> Tapering + x -> error $ unwords ["Unexpected feature value :", show x] + +data StalkRoot = Bulbous | Club | Cup | Equal | Rhizomorphs | Rooted deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) + +charToStalkRoot :: Char -> Maybe StalkRoot +charToStalkRoot c = case c of + 'b' -> Just Bulbous + 'c' -> Just Club + 'u' -> Just Cup + 'e' -> Just Equal + 'z' -> Just Rhizomorphs + 'r' -> Just Rooted + '?' -> Nothing + x -> error $ unwords ["Unexpected feature value :", show x] + +data StalkSurfaceAboveRing = SSARFibrous | SSARScaly | SSARSilky | SSARSmooth deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToSsar :: Char -> StalkSurfaceAboveRing +charToSsar = \case + 'f' -> SSARFibrous + 'y' -> SSARScaly + 'k' -> SSARSilky + 's' -> SSARSmooth + x -> error $ unwords ["Unexpected feature value :", show x] + +data StalkSurfaceBelowRing = SSBRFibrous | SSBRScaly | SSBRSilky | SSBRSmooth deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToSsbr :: Char -> StalkSurfaceBelowRing +charToSsbr = \case + 'f' -> SSBRFibrous + 'y' -> SSBRScaly + 'k' -> SSBRSilky + 's' -> SSBRSmooth + x -> error $ unwords ["Unexpected feature value :", show x] + +data StalkColorAboveRing = SCARBrown | SCARBuff | SCARCinnamon | SCARGray | SCAROrange | SCARPink | SCARRed | SCARWhite | SCARYellow deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToScar :: Char -> StalkColorAboveRing +charToScar = \case + 'n' -> SCARBrown + 'b' -> SCARBuff + 'c' -> SCARCinnamon + 'g' -> SCARGray + 'o' -> SCAROrange + 'p' -> SCARPink + 'e' -> SCARRed + 'w' -> SCARWhite + 'y' -> SCARYellow + x -> error $ unwords ["Unexpected feature value :", show x] + +data StalkColorBelowRing = SCBRBrown | SCBRBuff | SCBRCinnamon | SCBRGray | SCBROrange | SCBRPink | SCBRRed | SCBRWhite | SCBRYellow deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToScbr :: Char -> StalkColorBelowRing +charToScbr = \case + 'n' -> SCBRBrown + 'b' -> SCBRBuff + 'c' -> SCBRCinnamon + 'g' -> SCBRGray + 'o' -> SCBROrange + 'p' -> SCBRPink + 'e' -> SCBRRed + 'w' -> SCBRWhite + 'y' -> SCBRYellow + x -> error $ unwords ["Unexpected feature value :", show x] + +data VeilType = Partial | Universal deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToVeilType :: Char -> VeilType +charToVeilType = \case + 'p' -> Partial + 'u' -> Universal + x -> error $ unwords ["Unexpected feature value :", show x] + +data VeilColor = VCBrown | VCOrange | VCWhite | VCYellow deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToVeilColor :: Char -> VeilColor +charToVeilColor = \case + 'n' -> VCBrown + 'o' -> VCOrange + 'w' -> VCWhite + 'y' -> VCYellow + x -> error $ unwords ["Unexpected feature value :", show x] + +-- | 18. ring-number: none=n,one=o,two=t +data RingNumber = RNNone | RNOne | RNTwo deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToRingNumber :: Char -> RingNumber +charToRingNumber = \case + 'n' -> RNNone + 'o' -> RNOne + 't' -> RNTwo + x -> error $ unwords ["Unexpected feature value :", show x] + +data RingType = RTCobwebby | RTEvanescent | RTFlaring | RTLarge | RTNone | RTPendant | RTSheathing | RTZone deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToRingType :: Char -> RingType +charToRingType = \case + 'c' -> RTCobwebby + 'e' -> RTEvanescent + 'f' -> RTFlaring + 'l' -> RTLarge + 'n' -> RTNone + 'p' -> RTPendant + 's' -> RTSheathing + 'z' -> RTZone + x -> error $ unwords ["Unexpected feature value :", show x] + +data SporePrintColor = SPCBlack | SPCBrown | SPCBuff | SPCChocolate | SPCGreen | SPCOrange | SPCPurple | SPCWhite | SPCYellow deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToSporePrintColor :: Char -> SporePrintColor +charToSporePrintColor = \case + 'k' -> SPCBlack + 'n' -> SPCBrown + 'b' -> SPCBuff + 'h' -> SPCChocolate + 'r' -> SPCGreen + 'o' -> SPCOrange + 'u' -> SPCPurple + 'w' -> SPCWhite + 'y' -> SPCYellow + x -> error $ unwords ["Unexpected feature value :", show x] + +data Population = Abundant | Clustered | Numerous | Scattered | Several | Solitary deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToPopulation :: Char -> Population +charToPopulation = \case + 'a' -> Abundant + 'c' -> Clustered + 'n' -> Numerous + 's' -> Scattered + 'v' -> Several + 'y' -> Solitary + x -> error $ unwords ["Unexpected feature value :", show x] + +data Habitat = Grasses | Leaves | Meadows | Paths | Urban | Waste | Woods deriving (Eq, Read, Show, Ord, Enum, Bounded, Generic) +charToHabitat :: Char -> Habitat +charToHabitat = \case + 'g' -> Grasses + 'l' -> Leaves + 'm' -> Meadows + 'p' -> Paths + 'u' -> Urban + 'w' -> Waste + 'd' -> Woods + x -> error $ unwords ["Unexpected feature value :", show x] + + +mushroom :: Dataset 'Https MushroomEntry +mushroom = csvDataset + $ URL $ uciMLDB /: "mushroom" /: "agaricus-lepiota.data" diff --git a/src/Numeric/Datasets/Netflix.hs b/src/Numeric/Datasets/Netflix.hs --- a/src/Numeric/Datasets/Netflix.hs +++ b/src/Numeric/Datasets/Netflix.hs @@ -1,10 +1,12 @@ {-# language OverloadedStrings, TemplateHaskell #-} +{-# OPTIONS_GHC -fno-warn-unused-imports #-} + {-| Netflix prize dataset From the README : The movie rating files contain over 100 million ratings from 480 thousand randomly-chosen, anonymous Netflix customers over 17 thousand movie titles. The data were collected between October, 1998 and December, 2005 and reflect the distribution of all ratings received during this period. The ratings are on a scale from 1 to 5 (integral) stars. To protect customer privacy, each customer id has been replaced with a randomly-assigned id. The date of each rating and the title and year of release for each movie id are also provided. -The competition ended on September, 2009, and the dataset was subsequently removed from the public domain by the company (see ). +The competition ended on September, 2009, and the dataset was subsequently removed from the public domain by the company (see ). We include in the repository a tiny subset of the original dataset for development purposes. Since we use `file-embed` to load the data, the directories are hardcoded (see the Datasets section below); users may either symlink or copy the full dataset in the given directories. @@ -16,7 +18,7 @@ -- * Types RD(..), UserId, MovieId, - Train(..), Test(..), Movie(..), + Train(..), Test(..), Movie(..), RatingDate(..), -- * Datasets trainingSet, testSet, movies @@ -33,7 +35,7 @@ -- import Control.Applicative import Data.Monoid (mconcat) import Data.Traversable (traverse) -import qualified Data.Attoparsec.Internal.Types as PT (Parser) +import qualified Data.Attoparsec.Internal.Types as PT (Parser) import Data.Attoparsec.ByteString import Data.Attoparsec.ByteString.Char8 hiding (takeWhile, inClass) @@ -139,8 +141,8 @@ parseTrainingSet' = do d <- traverse (parseOnly trainingSetParser . snd) trainingSet pure $ map toCoordsTrainCol d - + -- | Parse the whole test set, convert to coordinate format and concatenate into a single list. parseTestSet :: Either String [(UserId, MovieId, Day)] parseTestSet = mconcat <$> parseTestSet' @@ -191,7 +193,7 @@ -- - MovieID do not correspond to actual Netflix movie ids or IMDB movie ids. -- - YearOfRelease can range from 1890 to 2005 and may correspond to the release of -- corresponding DVD, not necessarily its theaterical release. --- - Title is the Netflix movie title and may not correspond to +-- - Title is the Netflix movie title and may not correspond to -- titles used on other sites. Titles are in English. moviesParser :: PT.Parser ByteString [Movie] moviesParser = parseRows moviesRow @@ -208,7 +210,7 @@ d <- date let r = RatingDate (UserId uid) d return $ Train r rate - + testRow :: PT.Parser ByteString Test testRow = do uid <- decc @@ -223,16 +225,16 @@ title <- takeWhile (inClass "-a-zA-Z0-9 :,&.") return $ Movie (MovieId mo) (fromGregorian (fromIntegral ye) 1 1) title - + -- * Attoparsec parser combinators parseRows :: PT.Parser ByteString a -> PT.Parser ByteString [a] parseRows p = many1 (p <* endOfLine) --- a "stanza" is a block of rows starting with the movie ID and a colon. +-- a "stanza" is a block of rows starting with the movie ID and a colon. stanza :: PT.Parser ByteString a -> PT.Parser ByteString (MovieId, [a]) stanza p = do i <- ident <* endOfLine diff --git a/src/Numeric/Datasets/OldFaithful.hs b/src/Numeric/Datasets/OldFaithful.hs --- a/src/Numeric/Datasets/OldFaithful.hs +++ b/src/Numeric/Datasets/OldFaithful.hs @@ -1,4 +1,5 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} +{-# OPTIONS_GHC -fno-warn-unused-imports #-} {-| @@ -14,10 +15,11 @@ module Numeric.Datasets.OldFaithful where -import Data.Csv -import Control.Applicative import Numeric.Datasets +import Data.Csv +import Control.Applicative +import Network.HTTP.Req ((/:), https, Scheme(..)) data OldFaithful = OldFaithful @@ -28,8 +30,7 @@ instance FromRecord OldFaithful where parseRecord v = OldFaithful <$> v .! 2 <*> v.! 1 -oldFaithful :: Dataset OldFaithful -oldFaithful - = let src = URL "https://raw.githubusercontent.com/vincentarelbundock/Rdatasets/master/csv/datasets/faithful.csv" +oldFaithful :: Dataset 'Https OldFaithful +oldFaithful + = let src = URL $ https "raw.githubusercontent.com" /: "vincentarelbundock" /: "Rdatasets" /: "master" /: "csv" /: "datasets" /: "faithful.csv" in Dataset src Nothing Nothing $ CSVRecord HasHeader defaultDecodeOptions - diff --git a/src/Numeric/Datasets/Quakes.hs b/src/Numeric/Datasets/Quakes.hs --- a/src/Numeric/Datasets/Quakes.hs +++ b/src/Numeric/Datasets/Quakes.hs @@ -1,4 +1,4 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} {-| @@ -15,6 +15,7 @@ import Data.Csv import GHC.Generics +import Network.HTTP.Req ((/:), http, Scheme(..)) data Quake = Quake { lat :: Double @@ -26,6 +27,6 @@ instance FromNamedRecord Quake -quakes :: Dataset Quake +quakes :: Dataset 'Http Quake quakes = csvHdrDataset - $ URL "http://vincentarelbundock.github.io/Rdatasets/csv/datasets/quakes.csv" + $ URL $ http "vincentarelbundock.github.io" /: "Rdatasets" /: "csv" /: "datasets" /: "quakes.csv" diff --git a/src/Numeric/Datasets/States.hs b/src/Numeric/Datasets/States.hs --- a/src/Numeric/Datasets/States.hs +++ b/src/Numeric/Datasets/States.hs @@ -1,4 +1,5 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} +{-# OPTIONS_GHC -fno-warn-unused-imports #-} {-| @@ -15,6 +16,7 @@ import Data.Csv import GHC.Generics import Control.Applicative +import Network.HTTP.Req ((/:), http, Scheme(..)) data StateEdu = StateEdu { state :: String @@ -38,6 +40,7 @@ m .: "dollars" <*> m .: "pay" -states :: Dataset StateEdu +states :: Dataset 'Http StateEdu states = csvHdrDataset - $ URL "http://vincentarelbundock.github.io/Rdatasets/csv/car/States.csv" + $ URL $ http "vincentarelbundock.github.io" /: "Rdatasets" /: "csv" /: "car" /: "States.csv" + diff --git a/src/Numeric/Datasets/Sunspots.hs b/src/Numeric/Datasets/Sunspots.hs --- a/src/Numeric/Datasets/Sunspots.hs +++ b/src/Numeric/Datasets/Sunspots.hs @@ -1,4 +1,5 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} +{-# OPTIONS_GHC -fno-warn-unused-imports #-} {-| @@ -17,6 +18,7 @@ import Data.Csv import GHC.Generics import Control.Applicative +import Network.HTTP.Req ((/:), http, Scheme(..)) data Sunspot = Sunspot { time :: Double @@ -26,8 +28,10 @@ instance FromNamedRecord Sunspot where parseNamedRecord m = Sunspot <$> m .: "time" <*> - m .: "sunspot.month" + m .: "value" -sunspots :: Dataset Sunspot +sunspots :: Dataset 'Http Sunspot sunspots = csvHdrDataset - $ URL "http://vincentarelbundock.github.io/Rdatasets/csv/datasets/sunspot.month.csv" + $ URL $ http "vincentarelbundock.github.io" /: "Rdatasets" /: "csv" /: "datasets" /: "sunspot.month.csv" + +-- "http://vincentarelbundock.github.io/Rdatasets/csv/datasets/sunspot.month.csv" diff --git a/src/Numeric/Datasets/Titanic.hs b/src/Numeric/Datasets/Titanic.hs new file mode 100644 --- /dev/null +++ b/src/Numeric/Datasets/Titanic.hs @@ -0,0 +1,90 @@ +{-# language DeriveGeneric, OverloadedStrings, LambdaCase, DataKinds #-} +{-| + +Titanic Data Set. For each person on board the fatal maiden voyage of the ocean liner SS Titanic, this dataset records Sex, Age (child/adult), Class (Crew, 1st, 2nd, 3rd Class) and whether or not the person survived. + +``The Titanic survival data seem to become to categorical data analysis what Fisher's Iris data are to discriminant analysis.'' - Buja A.: A word from the editor of JCGS. Statistical Computing & Graphics Newsletter 10 (1), pp.32-33, 1999. + +Retrieved from: . A copy of the dataset can be found in datasets/titanic2_full.tsv . + +Header: + +"PassengerId" "Survived" "Pclass" "Name" "Sex" "Age" "SibSp" "Parch" "Ticket" "Fare" "Cabin" "Embarked" + +Example rows : + +10 1 2 "Nasser, Mrs. Nicholas (Adele Achem)" "female" 14 1 0 "237736" 30.0708 "" "C" +29 1 3 "O'Dwyer, Miss. Ellen \"Nellie\"" "female" NA 0 0 "330959" 7.8792 "" "Q" + +-} +module Numeric.Datasets.Titanic (titanicRemote, titanicLocal, TitanicEntry(..), Class(..), Age(..), Sex(..))where + +import Numeric.Datasets + +import Data.Csv +import GHC.Generics +import Network.HTTP.Req ((/:), https, Scheme(..)) + +data TitanicEntry = TitanicEntry { + tClass :: Class + , tAge :: Age + , tSex :: Sex + , tSurvived :: Bool -- ^ Did the passenger survive ? + } deriving (Eq, Read, Show, Generic) + + +instance FromNamedRecord TitanicEntry where + parseNamedRecord v = TitanicEntry <$> + (parseClass <$> v .: "Pclass") <*> + (v .: "Age") <*> + (parseSex <$> v .: "Sex") <*> + (parseBool <$> v .: "Survived") + + +data Class = First | Second | Third | Crew deriving (Eq, Read, Show, Generic, Enum, Bounded) + +parseClass :: String -> Class +parseClass = \case + "1" -> First + "2" -> Second + "3" -> Third + "Crew" -> Crew + x -> error $ unwords ["Unexpected feature value :", show x] + + +newtype Age = Age (Maybe Double) deriving (Eq, Read, Show, Generic) + +-- | The "Age" field requires a custom FromField instance because its value may be "NA" +instance FromField Age where + parseField s = case s of + "NA" -> pure $ Age Nothing + ss -> case runParser (parseField ss :: Parser Double) of + Left _ -> pure $ Age Nothing + Right x -> pure $ Age $ Just x + +data Sex = Female | Male deriving (Eq, Read, Show, Generic, Enum, Bounded) + +parseSex :: String -> Sex +parseSex = \case + "female" -> Female + "male" -> Male + x -> error $ unwords ["Unexpected feature value :", show x] + +parseBool :: String -> Bool +parseBool = \case + "1" -> True + "0" -> False + x -> error $ unwords ["Unexpected feature value :", show x] + +-- | The Titanic dataset, to be downloaded from +titanicRemote :: Dataset 'Https TitanicEntry +titanicRemote = withPreprocess removeEscQuotes $ csvHdrDatasetSep '\t' $ URL $ https "raw.githubusercontent.com" /: "JackStat" /: "6003Data" /: "master" /: "Titanic.txt" + +-- | The Titanic dataset, parsed from a local copy +titanicLocal :: Dataset h TitanicEntry +titanicLocal = withPreprocess removeEscQuotes $ csvHdrDatasetSep '\t' $ File "datafiles/titanic2_full.tsv" + + + + + diff --git a/src/Numeric/Datasets/UN.hs b/src/Numeric/Datasets/UN.hs --- a/src/Numeric/Datasets/UN.hs +++ b/src/Numeric/Datasets/UN.hs @@ -1,4 +1,4 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} {-| @@ -15,6 +15,7 @@ import Data.Csv import GHC.Generics import Control.Applicative +import Network.HTTP.Req ((/:), http, Scheme(..)) data GdpMortality = GdpMortality { country :: String @@ -28,6 +29,8 @@ (m .: "infant.mortality" <|> return Nothing) <*> (m .: "gdp" <|> return Nothing) -gdpMortalityUN :: Dataset GdpMortality +gdpMortalityUN :: Dataset 'Http GdpMortality gdpMortalityUN = csvHdrDataset - $ URL "http://vincentarelbundock.github.io/Rdatasets/csv/car/UN.csv" + $ URL $ http "vincentarelbundock.github.io" /: "Rdatasets" /: "csv" /: "car" /: "UN.csv" + +-- "http://vincentarelbundock.github.io/Rdatasets/csv/car/UN.csv" diff --git a/src/Numeric/Datasets/Vocabulary.hs b/src/Numeric/Datasets/Vocabulary.hs --- a/src/Numeric/Datasets/Vocabulary.hs +++ b/src/Numeric/Datasets/Vocabulary.hs @@ -1,4 +1,4 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} {-| @@ -14,9 +14,10 @@ import Data.Csv import GHC.Generics +import Network.HTTP.Req ((/:), http, Scheme(..)) data Sex = Female | Male - deriving (Show, Read, Eq, Generic) + deriving (Show, Read, Eq, Generic, Bounded, Enum) instance FromField Sex where parseField = parseReadField @@ -30,6 +31,6 @@ instance FromNamedRecord Vocab -vocab :: Dataset Vocab +vocab :: Dataset 'Http Vocab vocab = csvHdrDataset - $ URL "http://vincentarelbundock.github.io/Rdatasets/csv/car/Vocab.csv" + $ URL $ http "vincentarelbundock.github.io" /: "Rdatasets" /: "csv" /: "car" /: "Vocab.csv" diff --git a/src/Numeric/Datasets/Wine.hs b/src/Numeric/Datasets/Wine.hs --- a/src/Numeric/Datasets/Wine.hs +++ b/src/Numeric/Datasets/Wine.hs @@ -1,4 +1,4 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} {-| @@ -14,6 +14,7 @@ import Data.Csv import GHC.Generics +import Network.HTTP.Req ((/:), http, Scheme(..)) data Wine = Wine { wineClass :: Int @@ -34,7 +35,6 @@ instance FromRecord Wine -wine :: Dataset Wine -wine = csvDatasetPreprocess - fixAmericanDecimals - $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/wine/wine.data" +wine :: Dataset 'Http Wine +wine = withPreprocess fixAmericanDecimals $ + csvDataset $ URL $ umassMLDB /: "wine" /: "wine.data" diff --git a/src/Numeric/Datasets/WineQuality.hs b/src/Numeric/Datasets/WineQuality.hs --- a/src/Numeric/Datasets/WineQuality.hs +++ b/src/Numeric/Datasets/WineQuality.hs @@ -1,4 +1,5 @@ -{-# LANGUAGE DeriveGeneric, OverloadedStrings #-} +{-# LANGUAGE DeriveGeneric, OverloadedStrings, DataKinds #-} +{-# OPTIONS_GHC -fno-warn-unused-imports #-} {-| @@ -15,6 +16,7 @@ import Data.Csv import GHC.Generics import Control.Applicative +import Network.HTTP.Req ((/:), http, Scheme(..)) data WineQuality = WineQuality { fixedAcidity :: Double @@ -46,9 +48,9 @@ m .: "alcohol" <*> m .: "quality" -redWineQuality, whiteWineQuality :: Dataset WineQuality +redWineQuality, whiteWineQuality :: Dataset 'Http WineQuality redWineQuality = csvHdrDatasetSep ';' - $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/wine-quality/winequality-red.csv" + $ URL $ umassMLDB /: "wine-quality" /: "winequality-red.csv" whiteWineQuality = csvHdrDatasetSep ';' - $ URL "http://mlr.cs.umass.edu/ml/machine-learning-databases/wine-quality/winequality-white.csv" + $ URL $ umassMLDB /: "wine-quality" /: "winequality-white.csv"