cobot 0.1.1.2 → 0.1.1.4
raw patch · 2 files changed
+129/−127 lines, 2 filesdep ~arraydep ~bytestringdep ~clock
Dependency ranges changed: array, bytestring, clock, containers, criterion, deepseq, hspec, lens, linear, megaparsec, mtl, parallel, random, split, template-haskell, text
Files
- ChangeLog.md +9/−0
- cobot.cabal +120/−127
ChangeLog.md view
@@ -2,6 +2,15 @@ ## Unreleased changes +## [0.1.1.4] - 2020-04-30+### Fixed+- Tweak `package.yaml` to make `stack-2.3.1` happy.++## [0.1.1.3] - 2020-04-30+### Fixed+- Change Hackage upload command to `--pvp-bounds upper` instead of `both` to fix plan construction+ for older GHCs. This is needed to fix haddocks building on Hackage.+ ## [0.1.1.2] - 2020-04-15 ### Changed - Resolver version up.
cobot.cabal view
@@ -1,138 +1,131 @@-cabal-version: 1.12-name: cobot-version: 0.1.1.2-license: BSD3-license-file: LICENSE-copyright: 2018—2019, Less Wrong Bio-maintainer: pavel@yakovlev.me-author: Pavel Yakovlev, Bogdan Neterebskii, Alexander Sadovnikov-homepage: https://github.com/biocad/cobot#readme-bug-reports: https://github.com/biocad/cobot/issues-synopsis: Computational biology toolkit to collaborate with researchers in constructive protein engineering-description:- Please see the README on GitHub at <https://github.com/biocad/cobot#readme>-category: Bio-build-type: Simple+cabal-version: 2.2++-- This file has been generated from package.yaml by hpack version 0.33.0.+--+-- see: https://github.com/sol/hpack+--+-- hash: 4089a1d80a81d96aba9533cda10ea42186142528d17846553acc98dcd7bf43b0++name: cobot+version: 0.1.1.4+synopsis: Computational biology toolkit to collaborate with researchers in constructive protein engineering+description: Please see the README on GitHub at <https://github.com/biocad/cobot#readme>+category: Bio+homepage: https://github.com/biocad/cobot#readme+bug-reports: https://github.com/biocad/cobot/issues+author: Pavel Yakovlev, Bogdan Neterebskii, Alexander Sadovnikov+maintainer: pavel@yakovlev.me+copyright: 2018—2019, Less Wrong Bio+license: BSD-3-Clause+license-file: LICENSE+build-type: Simple extra-source-files: README.md ChangeLog.md source-repository head- type: git- location: https://github.com/biocad/cobot+ type: git+ location: https://github.com/biocad/cobot library- exposed-modules:- Bio.Chain- Bio.Chain.Alignment- Bio.Chain.Alignment.Algorithms- Bio.Chain.Alignment.Scoring- Bio.Chain.Alignment.Scoring.Loader- Bio.Chain.Alignment.Scoring.TH- Bio.Chain.Alignment.Type- Bio.Molecule- Bio.NucleicAcid.Chain- Bio.NucleicAcid.Nucleotide- Bio.NucleicAcid.Nucleotide.Instances- Bio.NucleicAcid.Nucleotide.Type- Bio.Protein.Algebra- Bio.Protein.AminoAcid- Bio.Protein.AminoAcid.Instances- Bio.Protein.AminoAcid.Type- Bio.Protein.Chain- Bio.Protein.Chain.Builder- Bio.Protein.Metric- Bio.Utils.Geometry- Bio.Utils.IUPAC- Bio.Utils.Matrix- Bio.Utils.Monomer- hs-source-dirs: src- other-modules:- Paths_cobot- default-language: Haskell2010- default-extensions: AllowAmbiguousTypes ConstraintKinds- DeriveFoldable DeriveFunctor DeriveGeneric DeriveTraversable- FlexibleContexts FlexibleInstances GeneralizedNewtypeDeriving- MultiWayIf RankNTypes RecordWildCards ScopedTypeVariables- TypeApplications TypeFamilies TypeSynonymInstances- UndecidableInstances- build-depends:- array >=0.5.4.0 && <0.6,- base >=4.7 && <5,- bytestring >=0.10.10.0 && <0.11,- containers >=0.6.2.1 && <0.7,- deepseq >=1.4.4.0 && <1.5,- lens >=4.18.1 && <4.19,- linear >=1.20.9 && <1.21,- megaparsec >=8.0.0 && <8.1,- mtl >=2.2.2 && <2.3,- split >=0.2.3.4 && <0.3,- template-haskell >=2.15.0.0 && <2.16,- text >=1.2.4.0 && <1.3+ exposed-modules:+ Bio.Chain+ Bio.Chain.Alignment+ Bio.Chain.Alignment.Algorithms+ Bio.Chain.Alignment.Scoring+ Bio.Chain.Alignment.Scoring.Loader+ Bio.Chain.Alignment.Scoring.TH+ Bio.Chain.Alignment.Type+ Bio.Molecule+ Bio.NucleicAcid.Chain+ Bio.NucleicAcid.Nucleotide+ Bio.NucleicAcid.Nucleotide.Instances+ Bio.NucleicAcid.Nucleotide.Type+ Bio.Protein.Algebra+ Bio.Protein.AminoAcid+ Bio.Protein.AminoAcid.Instances+ Bio.Protein.AminoAcid.Type+ Bio.Protein.Chain+ Bio.Protein.Chain.Builder+ Bio.Protein.Metric+ Bio.Utils.Geometry+ Bio.Utils.IUPAC+ Bio.Utils.Matrix+ Bio.Utils.Monomer+ Paths_cobot+ autogen-modules:+ Paths_cobot+ hs-source-dirs:+ src+ default-extensions: AllowAmbiguousTypes ConstraintKinds DeriveFoldable DeriveFunctor DeriveGeneric DeriveTraversable FlexibleContexts FlexibleInstances GeneralizedNewtypeDeriving MultiWayIf RankNTypes RecordWildCards ScopedTypeVariables TypeApplications TypeFamilies TypeSynonymInstances UndecidableInstances+ build-depends:+ array+ , base >=4.7 && <5+ , bytestring+ , containers+ , deepseq+ , lens+ , linear+ , megaparsec+ , mtl+ , split+ , template-haskell+ , text+ default-language: Haskell2010 test-suite cobot-test- type: exitcode-stdio-1.0- main-is: Spec.hs- hs-source-dirs: test- other-modules:- HandcraftedSpec- JuliaSpec- Paths_cobot- default-language: Haskell2010- default-extensions: AllowAmbiguousTypes ConstraintKinds- DeriveFoldable DeriveFunctor DeriveGeneric DeriveTraversable- FlexibleContexts FlexibleInstances GeneralizedNewtypeDeriving- MultiWayIf RankNTypes RecordWildCards ScopedTypeVariables- TypeApplications TypeFamilies TypeSynonymInstances- UndecidableInstances- ghc-options: -threaded -rtsopts- "-with-rtsopts=-A64m -qb0 -I0 -N -qn4"- build-depends:- array >=0.5.4.0 && <0.6,- base >=4.7 && <5,- bytestring >=0.10.10.0 && <0.11,- cobot -any,- containers >=0.6.2.1 && <0.7,- deepseq >=1.4.4.0 && <1.5,- hspec >=2.7.1 && <2.8,- lens >=4.18.1 && <4.19,- linear >=1.20.9 && <1.21,- megaparsec >=8.0.0 && <8.1,- mtl >=2.2.2 && <2.3,- split >=0.2.3.4 && <0.3,- template-haskell >=2.15.0.0 && <2.16,- text >=1.2.4.0 && <1.3+ type: exitcode-stdio-1.0+ main-is: Spec.hs+ other-modules:+ HandcraftedSpec+ JuliaSpec+ Paths_cobot+ hs-source-dirs:+ test+ default-extensions: AllowAmbiguousTypes ConstraintKinds DeriveFoldable DeriveFunctor DeriveGeneric DeriveTraversable FlexibleContexts FlexibleInstances GeneralizedNewtypeDeriving MultiWayIf RankNTypes RecordWildCards ScopedTypeVariables TypeApplications TypeFamilies TypeSynonymInstances UndecidableInstances+ ghc-options: -threaded -rtsopts "-with-rtsopts=-A64m -qb0 -I0 -N -qn4"+ build-depends:+ array+ , base >=4.7 && <5+ , bytestring+ , cobot+ , containers+ , deepseq+ , hspec+ , lens+ , linear+ , megaparsec+ , mtl+ , split+ , template-haskell+ , text+ default-language: Haskell2010 benchmark cobot-bench- type: exitcode-stdio-1.0- main-is: Main.hs- hs-source-dirs: bench- other-modules:- Paths_cobot- default-language: Haskell2010- default-extensions: AllowAmbiguousTypes ConstraintKinds- DeriveFoldable DeriveFunctor DeriveGeneric DeriveTraversable- FlexibleContexts FlexibleInstances GeneralizedNewtypeDeriving- MultiWayIf RankNTypes RecordWildCards ScopedTypeVariables- TypeApplications TypeFamilies TypeSynonymInstances- UndecidableInstances OverloadedStrings- ghc-options: -threaded -rtsopts- "-with-rtsopts=-A64m -qb0 -I0 -N -qn4"- build-depends:- array >=0.5.4.0 && <0.6,- base >=4.7 && <5,- bytestring >=0.10.10.0 && <0.11,- clock ==0.8.*,- cobot -any,- containers >=0.6.2.1 && <0.7,- criterion >=1.5.6.2 && <1.6,- deepseq >=1.4.4.0 && <1.5,- lens >=4.18.1 && <4.19,- linear >=1.20.9 && <1.21,- megaparsec >=8.0.0 && <8.1,- mtl >=2.2.2 && <2.3,- parallel >=3.2.2.0 && <3.3,- random ==1.1.*,- split >=0.2.3.4 && <0.3,- template-haskell >=2.15.0.0 && <2.16,- text >=1.2.4.0 && <1.3+ type: exitcode-stdio-1.0+ main-is: Main.hs+ other-modules:+ Paths_cobot+ hs-source-dirs:+ bench+ default-extensions: AllowAmbiguousTypes ConstraintKinds DeriveFoldable DeriveFunctor DeriveGeneric DeriveTraversable FlexibleContexts FlexibleInstances GeneralizedNewtypeDeriving MultiWayIf RankNTypes RecordWildCards ScopedTypeVariables TypeApplications TypeFamilies TypeSynonymInstances UndecidableInstances OverloadedStrings+ ghc-options: -threaded -rtsopts "-with-rtsopts=-A64m -qb0 -I0 -N -qn4"+ build-depends:+ array+ , base >=4.7 && <5+ , bytestring+ , clock+ , cobot+ , containers+ , criterion+ , deepseq+ , lens+ , linear+ , megaparsec+ , mtl+ , parallel+ , random+ , split+ , template-haskell+ , text+ default-language: Haskell2010