cobot-io 0.1.3.9 → 0.1.3.10

raw patch · 3 files changed

+20/−19 lines, 3 filesPVP ok

version bump matches the API change (PVP)

API changes (from Hackage documentation)

Files

• ChangeLog.md +5/−1
• cobot-io.cabal +2/−2
• src/Bio/GB/Parser.hs +13/−16

@@ -2,6 +2,10 @@  ## [Unreleased] +## [0.1.3.10] - 2020-11-06+### Fixed+- `SOURCE` and `ORIGIN` in GB parser.+ ## [0.1.3.9] - 2020-10-27 ### Fixed - FASTA parser can now parse empty lines with spaces. @@ -12,7 +16,7 @@  ## [0.1.3.7] - 2020-10-14 ### Added-- Generic fasta parser. +- Generic fasta parser.  ## [0.1.3.6] - 2020-07-14 ### Added

@@ -4,10 +4,10 @@ -- -- see: https://github.com/sol/hpack ----- hash: 2fa509bfbb994978869ae5dc69747b5693ec1c98d823c08ae3b850221ef52a80+-- hash: 7812eda294db70053683641ccf7a28ce152e843de09376f47a6bc6d2d1a86db2  name:           cobot-io-version:        0.1.3.9+version:        0.1.3.10 synopsis:       Biological data file formats and IO description:    Please see the README on GitHub at <https://github.com/biocad/cobot-io#readme> category:       Bio

@@ -4,20 +4,17 @@   ( genBankP   ) where -import           Bio.GB.Type          (Feature (..), Form (..),-                                       GenBankSequence (..), Locus (..),-                                       Meta (..), Reference (..), Source (..),-                                       Version (..))-import           Bio.Sequence         (MarkedSequence, Range, markedSequence)-import           Control.Applicative  ((<|>))-import           Data.Attoparsec.Text (Parser, char, decimal, digit, endOfInput,-                                       endOfLine, letter, many', many1',-                                       satisfy, string, takeWhile, takeWhile1)-import           Data.Bifunctor       (bimap)-import           Data.Char            (isAlphaNum, isSpace, isUpper)-import           Data.Functor         (($>))-import           Data.Text            (Text, intercalate, pack, splitOn, unpack)-import           Prelude              hiding (takeWhile)+import Bio.GB.Type          (Feature (..), Form (..), GenBankSequence (..), Locus (..), Meta (..),+                             Reference (..), Source (..), Version (..))+import Bio.Sequence         (MarkedSequence, Range, markedSequence)+import Control.Applicative  ((<|>))+import Data.Attoparsec.Text (Parser, char, decimal, digit, endOfInput, endOfLine, letter, many',+                             many1', satisfy, string, takeWhile, takeWhile1)+import Data.Bifunctor       (bimap)+import Data.Char            (isAlphaNum, isSpace, isUpper)+import Data.Functor         (($>))+import Data.Text            (Text, intercalate, pack, splitOn, unpack)+import Prelude              hiding (takeWhile)  -- | Parser of .gb file. --@@ -84,9 +81,9 @@  sourceP :: Parser Source sourceP =  string "SOURCE" *> space-        *> ((flip Source Nothing <$> emptyP) <|> (Source+        *> (Source        <$> someLinesP-       <*> wrapMP organismP))+       <*> wrapMP organismP)   where     organismP = string "  ORGANISM" *> space *> someLinesP