cobot-io 0.1.3.1 → 0.1.3.2
raw patch · 9 files changed
+23/−25 lines, 9 filesdep ~directorydep ~splitdep ~vectorPVP ok
version bump matches the API change (PVP)
Dependency ranges changed: directory, split, vector
API changes (from Hackage documentation)
Files
- ChangeLog.md +5/−0
- cobot-io.cabal +11/−11
- src/Bio/ABI/Decode.hs +1/−2
- src/Bio/MMTF.hs +1/−2
- src/Bio/MMTF/Decode/MessagePack.hs +5/−6
- src/Bio/PDB/Parser.hs +0/−1
- src/Bio/Sequence/Class.hs +0/−1
- src/Bio/Sequence/Functions/Sequence.hs +0/−1
- src/Bio/Uniprot/Parser.hs +0/−1
ChangeLog.md view
@@ -2,6 +2,11 @@ ## [Unreleased] +## [0.1.3.2] - 2020-04-15+### Changed+- Resolver version up.+- Moving from `less-wrong` to `biocad`.+ ## [0.1.3.1] - 2020-04-02 ### Fixed - Reading of insertion code for residues in MAE.
cobot-io.cabal view
@@ -1,16 +1,16 @@ cabal-version: 1.12 name: cobot-io-version: 0.1.3.1+version: 0.1.3.2 license: BSD3 license-file: LICENSE-copyright: 2018-2019, Less Wrong Bio+copyright: 2020, Biocad maintainer: pavel@yakovlev.me author: Pavel Yakovlev, Bogdan Neterebskii, Alexander Sadovnikov-homepage: https://github.com/less-wrong/cobot-io#readme-bug-reports: https://github.com/less-wrong/cobot-io/issues+homepage: https://github.com/biocad/cobot-io#readme+bug-reports: https://github.com/biocad/cobot-io/issues synopsis: Biological data file formats and IO description:- Please see the README on GitHub at <https://github.com/less-wrong/cobot-io#readme>+ Please see the README on GitHub at <https://github.com/biocad/cobot-io#readme> category: Bio build-type: Simple extra-source-files:@@ -19,7 +19,7 @@ source-repository head type: git- location: https://github.com/less-wrong/cobot-io+ location: https://github.com/biocad/cobot-io library exposed-modules:@@ -85,9 +85,9 @@ lens >=4.16 && <5.0, linear ==1.20.*, mtl >=2.2.1 && <2.3.0,- split >=0.2.3.3 && <0.3,+ split >=0.2.3.4 && <0.3, text >=1.2.2.1 && <1.3,- vector >=0.12.0.3 && <0.13+ vector >=0.12.1.2 && <0.13 test-suite cobot-io-test type: exitcode-stdio-1.0@@ -123,7 +123,7 @@ containers >=0.5.7.1 && <0.7, data-msgpack >=0.0.9 && <0.1, deepseq ==1.4.*,- directory >=1.3.3.0 && <1.4,+ directory >=1.3.6.0 && <1.4, hspec >=2.4.1 && <2.8, http-conduit ==2.3.*, hyraxAbif >=0.2.3.15 && <0.2.4.0,@@ -131,6 +131,6 @@ linear ==1.20.*, mtl >=2.2.1 && <2.3.0, neat-interpolation ==0.3.*,- split >=0.2.3.3 && <0.3,+ split >=0.2.3.4 && <0.3, text >=1.2.2.1 && <1.3,- vector >=0.12.0.3 && <0.13+ vector >=0.12.1.2 && <0.13
src/Bio/ABI/Decode.hs view
@@ -9,8 +9,7 @@ import Data.ByteString.Lazy as BSL (ByteString, fromStrict) import Data.ByteString.Lazy.Char8 as BSL8 (unpack) import Data.Char (ord)-import Data.List (elem, find)-import Data.Maybe (maybe)+import Data.List (find) import Data.Text (Text) import Hyrax.Abif (Abif (..), Directory (..)) import Hyrax.Abif.Read (getAbif)
src/Bio/MMTF.hs view
@@ -16,9 +16,8 @@ import Data.Bifunctor (Bifunctor (..)) import Data.ByteString.Lazy (ByteString) import Data.Int (Int32)-import Data.List (mapAccumL, zip3, zip4)+import Data.List (mapAccumL, zip4) import Data.MessagePack (unpack)-import Data.Monoid ((<>)) import Data.String (IsString (..)) import Data.Text (Text) import Data.Vector (Vector, empty, toList, (!))
src/Bio/MMTF/Decode/MessagePack.hs view
@@ -2,13 +2,12 @@ module Bio.MMTF.Decode.MessagePack where -import Data.ByteString.Lazy (ByteString, fromStrict)-import Data.Map.Strict (Map, fromList)-import qualified Data.Map.Strict as M (lookup)+import Data.ByteString.Lazy (ByteString, fromStrict)+import Data.Map.Strict (Map, fromList)+import qualified Data.Map.Strict as M (lookup) import Data.MessagePack-import Data.Monoid ((<>))-import Data.Text (Text)-import qualified Data.Text as T (unpack)+import Data.Text (Text)+import qualified Data.Text as T (unpack) #if !MIN_VERSION_base(4,13,0) -- Data.MessagePack includes MonadFail constraints only for GHC-8.8+, so we can't use
src/Bio/PDB/Parser.hs view
@@ -16,7 +16,6 @@ import qualified Data.List as L (groupBy) import Data.Map.Strict (Map, fromListWithKey) import Data.Maybe (catMaybes)-import Data.Monoid ((<>)) import Data.Text as T (Text, concat, pack, stripEnd) import qualified Data.Vector as V (Vector, concat, fromList, singleton) import GHC.Generics ()
src/Bio/Sequence/Class.hs view
@@ -45,7 +45,6 @@ import Bio.Sequence.Utilities (Range, checkRange, unsafeEither) import Control.Lens import Control.Monad.Except (MonadError, throwError)-import Data.Bifunctor (bimap) import Data.Kind (Constraint) import qualified Data.List as L (length, null) import Data.Text (Text)
src/Bio/Sequence/Functions/Sequence.hs view
@@ -18,7 +18,6 @@ import Bio.Sequence.Utilities (Range, checkRange, unsafeEither) import Control.Lens import Control.Monad.Except (MonadError, throwError)-import Data.Bifunctor (bimap) import qualified Data.Foldable as F (length, null, toList) import qualified Data.List as L (drop, take) import Data.Maybe (fromMaybe)
src/Bio/Uniprot/Parser.hs view
@@ -16,7 +16,6 @@ import Data.Bifunctor (second) import Data.Char (isSpace) import Data.Functor (($>))-import Data.Monoid ((<>)) import Data.Text (Text, append, isPrefixOf, null, pack, splitOn, unpack)