diff --git a/app/mergeMotifs.hs b/app/mergeMotifs.hs new file mode 100644 --- /dev/null +++ b/app/mergeMotifs.hs @@ -0,0 +1,153 @@ +{-# LANGUAGE OverloadedStrings #-} + +import AI.Clustering.Hierarchical hiding (drawDendrogram) +import Control.Monad (forM) +import qualified Data.ByteString.Char8 as B +import Data.Default.Class +import Data.List +import Data.List.Split (splitOn) +import Data.Ord +{- +import Diagrams.Backend.Cairo +import Diagrams.Plots.Dendrogram +import Diagrams.Prelude (dims2D, strutX, (|||)) +-} +import Options.Applicative +import System.IO +import Text.Printf + +import Bio.Data.Fasta +import Bio.Motif +import Bio.Motif.Alignment +import Bio.Motif.Merge +import Bio.Seq (toBS) +import Bio.Utils.Functions + +data Options = Options + { input :: FilePath + , output :: FilePath + , prefix :: String + , thres :: Double + , mode :: String + , svg :: Maybe FilePath + , dumpDist :: Bool + , gap :: Double + } deriving (Show) + +parser :: Parser Options +parser = Options + <$> argument str (metavar "INPUT") + <*> strOption + ( long "output" + <> short 'o' + <> value "merged_output.meme" + <> metavar "OUTPUT" ) + <*> strOption + ( long "prefix" + <> short 'p' + <> value "merged" + <> metavar "PREFIX" + <> help "PREFIX that being add to the name of the merged motif" ) + <*> option auto + ( long "thres" + <> short 't' + <> value 0.2 + <> metavar "THRESHOLD" + <> help "two motifs that have distance belowing threshold would be merged, default is 0.2" ) + <*> strOption + ( long "mode" + <> short 'm' + <> value "iter" + <> metavar "MODE" + <> help "merging algorithm, could be iter or tree, default is iter" ) + <*> (optional . strOption) + ( long "svg" + <> metavar "SVG" + <> help "draw merging tree in svg format, only available in tree mode" ) + <*> switch + ( long "dump-dist" + <> help "output pairwise distances of original motifs without performing any merging" ) + <*> option auto + ( long "gap" + <> short 'g' + <> value 0.15 + <> metavar "GAP_PENALTY" + <> help "gap penalty" ) + +-- | Return pairwise distances +pairDistance :: [Motif] -> [(B.ByteString, B.ByteString, Double)] +pairDistance ms = map (\(a,b) -> (_name a, _name b, fst $ alignment (_pwm a) (_pwm b))) $ comb ms + +treeMerge :: Double -> String -> [Motif] -> Double -> ([Motif], Dendrogram Motif) +treeMerge th pre ms gap = (zipWith f [0::Int ..] $ map merge $ tree `cutAt` th, tree) + where + f i (suffix, pwm) = Motif ((B.pack $ pre ++ "_" ++ show i ++ "_" ++ show (toIUPAC pwm)) + `B.append` "(" + `B.append` suffix + `B.append` ")" ) pwm + merge tr = ( B.intercalate "+" $ map _name $ flatten tr + , dilute $ mergeTreeWeighted align tr) + tree = buildTree align ms + align = alignmentBy jsd $ quadPenal gap +{-# INLINE treeMerge #-} + +getSuffix :: String -> String +getSuffix = last . splitOn "." + +defaultMain :: Options -> IO () +defaultMain (Options inFl outFl pre th m svg dump gap) = do + let readMotif = case getSuffix inFl of + "fasta" -> readFasta' + _ -> readMEME + writeMotif = case getSuffix outFl of + "fasta" -> writeFasta + _ -> \fl x -> writeMEME fl x def + motifs <- readMotif inFl + + if dump + then + mapM_ (\(a,b,c) -> B.putStrLn $ B.intercalate "\t" [a, b, B.pack $ show c]) $ pairDistance motifs + else do + let motifNumber = length motifs + + hPutStrLn stderr $ printf "Merging Mode: %s" m + hPutStrLn stderr $ printf "Read %d motifs" motifNumber + + motifs' <- case m of + "tree" -> do + let (newMotifs, tree) = treeMerge th pre motifs gap + fn x = B.unpack (_name x) ++ ": " ++ B.unpack (toBS $ toIUPAC $ _pwm x) + + case svg of + Just fl -> do + {- + let w = 80 + h = 5 * fromIntegral motifNumber + renderCairo fl (dims2D (10*w) (10*h)) $ drawDendrogram w h th tree fn ||| strutX 40 + -} + return newMotifs + _ -> return newMotifs + "iter" -> do + let rs = iterativeMerge (alignmentBy jsd (quadPenal gap)) th motifs + forM rs $ \(nm, pwm, ws) -> do + let pwm' = dilute (pwm, ws) + return $ Motif (B.intercalate "+" nm) pwm + -- _ -> error "Unkown mode!" + + hPutStrLn stderr $ printf "Write %d motifs" (length motifs') + + writeMotif outFl motifs' +{-# INLINE defaultMain #-} + +comb :: [a] -> [(a,a)] +comb (y:ys) = zip (repeat y) ys ++ comb ys +comb _ = [] +{-# INLINE comb #-} + +main :: IO () +main = execParser opts >>= defaultMain + where + opts = info (helper <*> parser) + ( fullDesc + <> header (printf "Merge similar PWMs, version %s" v)) + v = "0.2.0" :: String diff --git a/app/mkindex.hs b/app/mkindex.hs new file mode 100644 --- /dev/null +++ b/app/mkindex.hs @@ -0,0 +1,11 @@ +module Main where + +import Bio.Seq.IO (mkIndex) +import Shelly +import qualified Data.Text as T +import System.Environment + +main :: IO () +main = do [inDir, outF] <- getArgs + fls <- shelly . lsT . fromText . T.pack $ inDir + mkIndex (map T.unpack fls) outF diff --git a/app/viewSeq.hs b/app/viewSeq.hs new file mode 100644 --- /dev/null +++ b/app/viewSeq.hs @@ -0,0 +1,15 @@ +module Main where + +import qualified Data.ByteString.Char8 as B +import Bio.Seq +import Bio.Seq.IO +import System.Environment + +main :: IO () +main = do + [fl, chr, start, end] <- getArgs + g <- pack fl + s <- getSeqs g [(B.pack chr, read start, read end)] :: IO [Either String (DNA IUPAC)] + case head s of + Left err -> error err + Right x -> B.putStrLn . toBS $ x diff --git a/bioinformatics-toolkit.cabal b/bioinformatics-toolkit.cabal --- a/bioinformatics-toolkit.cabal +++ b/bioinformatics-toolkit.cabal @@ -2,7 +2,7 @@ -- further documentation, see http://haskell.org/cabal/users-guide/ name: bioinformatics-toolkit -version: 0.1.1 +version: 0.2.0 synopsis: A collection of bioinformatics tools description: A collection of bioinformatics tools license: MIT @@ -13,7 +13,7 @@ category: Bio build-type: Simple extra-source-files: README.md -cabal-version: >=1.10 +cabal-version: >=1.18 data-files: data/*.fasta @@ -26,13 +26,14 @@ Bio.ChIPSeq.FragLen Bio.Data.Bam Bio.Data.Bed - Bio.Data.BigWig +-- Bio.Data.BigWig Bio.Data.Fasta Bio.GO Bio.GO.Parser Bio.GO.GREAT Bio.Motif Bio.Motif.Alignment + Bio.Motif.Merge Bio.Motif.Search Bio.RealWorld.BioGRID Bio.RealWorld.ENCODE @@ -49,19 +50,19 @@ -- other-modules: -- other-extensions: build-depends: - base >=4.0 && <5.0 + base >=4.8 && <5.0 , aeson , aeson-pretty - , bbi +-- , bbi , binary , bytestring >=0.10 , bytestring-lexing >=0.5 + , clustering , colour - , conduit + , conduit-combinators , containers >=0.5 , data-default-class , double-conversion - , clustering , http-conduit , hexpat , matrices >=0.4.3 @@ -78,51 +79,51 @@ , vector , vector-algorithms , word8 - , IntervalMap >=0.3 + , IntervalMap >=0.5.0.0 default-language: Haskell2010 executable mkindex - hs-source-dirs: exe + hs-source-dirs: app main-is: mkindex.hs build-depends: - base >=4.6 && <5.0 + base >=4.8 && <5.0 , bioinformatics-toolkit , shelly , text default-language: Haskell2010 executable viewSeq - hs-source-dirs: exe + hs-source-dirs: app main-is: viewSeq.hs build-depends: - base >=4.6 && <5.0 + base >=4.8 && <5.0 , bioinformatics-toolkit , bytestring default-language: Haskell2010 ---executable mergeMotifs --- hs-source-dirs: exe --- main-is: mergeMotifs.hs --- build-depends: --- base >=4.6 && <5.0 --- , bioinformatics-toolkit --- , bytestring --- , clustering --- , data-default-class --- , split --- , optparse-applicative +executable mergeMotifs + hs-source-dirs: app + main-is: mergeMotifs.hs + build-depends: + base >=4.6 && <5.0 + , bioinformatics-toolkit + , bytestring + , clustering + , data-default-class + , split + , optparse-applicative -- , haskell-plot >=0.2.0.0 -- , diagrams-cairo >=1.3 -- , diagrams-lib >=1.3 --- default-language: Haskell2010 + default-language: Haskell2010 benchmark bench type: exitcode-stdio-1.0 main-is: benchmarks/bench.hs default-language: Haskell2010 build-depends: - base >=4.6 && <5.0 + base >=4.8 && <5.0 , bioinformatics-toolkit , random , criterion @@ -139,6 +140,7 @@ main-is: test.hs other-modules: Tests.Bed + , Tests.Bam , Tests.ChIPSeq , Tests.Motif , Tests.Seq @@ -155,6 +157,7 @@ , tasty-hunit , bioinformatics-toolkit , conduit + , conduit-combinators , unordered-containers , mtl diff --git a/data/1.fasta b/data/1.fasta new file mode 100644 --- /dev/null +++ b/data/1.fasta @@ -0,0 +1,30 @@ +MEME version 4 + +ALPHABET= ACGT + +strands: + - + +Background letter frequencies +A 0.25 C 0.25 G 0.25 T 0.25 + +MOTIF tree0.2_0_GGAKATWATMTC +letter-probability matrix: alength= 4 w= 12 nsites= 1 E= 0 + 0.001 0.001 0.997 0.001 + 0.001 0.003 0.995 0.001 + 0.997 0.001 0.001 0.001 + 0.001 0.001 0.474 0.524 + 0.997 0.001 0.001 0.001 + 0.997 0.001 0.001 0.001 + 0.25 0.25 0.25 0.25 + 0.25 0.25 0.25 0.25 + +MOTIF tree0.2_1_CTCCCTAAAATG +letter-probability matrix: alength= 4 w= 12 nsites= 1 E= 0 + 0.25 0.25 0.25 0.25 + 0.25 0.25 0.25 0.25 + 0.001 0.001 0.997 0.001 + 0.001 0.003 0.995 0.001 + 0.997 0.001 0.001 0.001 + 0.001 0.001 0.474 0.524 + 0.997 0.001 0.001 0.001 + 0.997 0.001 0.001 0.001 diff --git a/data/motifs.fasta b/data/motifs.fasta deleted file mode 100644 --- a/data/motifs.fasta +++ /dev/null @@ -1,1000 +0,0 @@ ->H3k27me3_1 -0.606774 0.016294 0.13288 0.244052 -0.036584 0.220797 0.734391 0.008228 -0.007188 0.022713 0.970099 0 -0.880368 0.00655 0 0.113082 -0.022933 0.370323 0.588998 0.017746 -0.03691 0.064294 0.898796 0 -0.036733 0.847295 0.05167 0.064303 -0.035226 0.936624 0.009752 0.018398 -0.038192 0 0.961808 0 -0.86875 0.034126 0 0.097123 - ->H3k27me3_2 -0.027569 0.836023 0.098072 0.038336 -0.066084 0.796257 0.084066 0.053593 -0.053722 0.101794 0.788767 0.055717 -0.027115 0.851343 0.096392 0.02515 -0.057722 0.783978 0.10818 0.05012 -0.036805 0.14198 0.733304 0.087911 -0.015704 0.891019 0.070288 0.022988 -0.053043 0.784949 0.107395 0.054612 -0.050031 0.135567 0.737444 0.076958 - ->H3k27me3_3 -0.057438 0.817772 0.062863 0.061926 -0.106073 0.731281 0.120311 0.042334 -0.030535 0.018387 0.88613 0.064948 -0.030741 0.879362 0.049584 0.040314 -0.015252 0.788258 0.137458 0.059032 -0.10851 0.817518 0.033884 0.040088 -0.036468 0.01862 0.816303 0.128608 -0.009933 0.730805 0.207425 0.051837 -0.03466 0.800567 0.091489 0.073284 - ->H3k27me3_4 -0.282 0.275 0.302 0.141 -0.278 0.207 0.301 0.215 -0.646 0.04 0.091 0.223 -0.053 0.707 0.062 0.178 -0.09 0.09 0.693 0.127 -0.224 0.462 0.078 0.236 -0.178 0.053 0.57 0.199 -0.128 0.646 0.086 0.14 -0.04 0.186 0.608 0.166 -0.165 0.16 0.535 0.14 -0.228 0.24 0.279 0.253 -0.242 0.293 0.287 0.179 - ->H3k27me3_5 -0 0 0.951071 0.048929 -0 0 0 1 -0.627359 0.095216 0.049576 0.227849 -0 0.024042 0.580115 0.395842 -0.028143 0.971857 0 0 -0 0.014661 0 0.985339 -0.005613 0.019322 0.975064 0 - ->H3k27me3_6 -0.057628 0.768463 0.028808 0.145102 -0.004678 0.995322 0 0 -0.84383 0.054519 0.070009 0.031642 -0.013305 0.045173 0.836304 0.105218 -0.380657 0.550477 0.068865 0 -0.020839 0.91739 0.061771 0 -0.112091 0.040031 0.815495 0.032383 -0 0.682259 0.274559 0.043182 -0 0.058162 0.941838 0 - ->H3k27me3_7 -0.065186 0.381721 0.450664 0.102429 -0.177422 0.633336 0.1695 0.019743 -0.022156 0.928003 0.020696 0.029145 -0.00933 0.028055 0.914386 0.048229 -0.851568 0.036666 0.030642 0.081124 -0.195895 0.028873 0.743155 0.032077 -0.030455 0.668012 0.089362 0.212171 -0.05471 0.033974 0.90287 0.008447 -0 0.97092 0.018842 0.010238 -0.00204 0.035057 0.82321 0.139693 -0.189764 0.229928 0.536579 0.043729 - ->H3k27me3_8 -0.221868 0.141908 0 0.636224 -0.20352 0.751002 0.020317 0.025161 -0.201842 0.316531 0.384956 0.096671 -0.048677 0.037684 0.872111 0.041527 -0.165474 0.038256 0.665057 0.131213 -0.072201 0.842767 0.019817 0.065215 -0.146093 0.028365 0.825541 0 -0.058821 0.802287 0.041842 0.09705 -0.144684 0.067184 0.750231 0.037901 -0.08984 0.805021 0.040715 0.064423 -0.839481 0.054112 0.059255 0.047152 -0 0.934819 0.03832 0.026862 - ->H3k27me3_9 -0.167882 0.520832 0.275958 0.035328 -0.186393 0.813607 0 0 -0.314604 0 0.670072 0.015324 -0 0.926258 0.069624 0.004118 -0 0.920505 0.079495 0 -0 0.770725 0.040069 0.189206 -0.009384 0.020025 0.970591 0 -0.861156 0.05519 0 0.083654 -0 0.035565 0.964435 0 - ->H3k27me3_10 -0 0 1 0 -0.887436 0.050346 0.010708 0.05151 -0.045451 0.004784 0.935866 0.013899 -0.026369 0.089881 0.88375 0 -0.983318 0.016682 0 0 -0 0.25089 0 0.74911 -0 0.675374 0.324626 0 -0 0 0.932479 0.067521 -0 0.932663 0 0.067337 - ->H3k27me3_11 -0.224457 0.725389 0.036157 0.013997 -0.046447 0 0.953553 0 -0.063569 0.918074 0.016276 0.002081 -0.812151 0 0.15863 0.029219 -0 0.842258 0 0.157742 -0.022002 0.020292 0.957706 0 -0.081601 0.82946 0.049243 0.039696 -0.044825 0.029444 0.819662 0.10607 -0 0.64916 0.03712 0.31372 - ->H3k27me3_12 -0.001305 0.985088 0.006533 0.007073 -0.030098 0.137468 0.031795 0.800639 -0.000641 0.947329 0.050635 0.001395 -0.708868 0.138382 0.048309 0.104441 -0.01663 0.177837 0.764505 0.041027 -0.019051 0.285605 0.03219 0.663153 -0.018078 0.053027 0.222331 0.706565 -0.009817 0.183174 0.02938 0.77763 -0.003817 0.963035 0.008029 0.025119 -0.008196 0.944821 0.003097 0.043885 -0.190656 0.284665 0.035054 0.489625 -0.007074 0.235282 0.708158 0.049486 - ->H3k27me3_13 -0.201553 0.786786 0.011662 0 -0.056087 0.822486 0.109843 0.011584 -0.025109 0.017029 0.957862 0 -0.048154 0.648583 0.029026 0.274237 -0 0.034838 0.955107 0.010055 -0.887569 0 0 0.112431 -0.00911 0.869571 0.116133 0.005186 -0.224225 0.524249 0.027113 0.224412 -0.100124 0.825883 0.056214 0.017778 - ->H3k27me3_14 -0.041 0.778533 0.042471 0.137996 -0.123524 0.756722 0.072554 0.0472 -0.000288 0.917455 0.082257 0 -0.775207 0.042638 0.03771 0.144445 -0.006508 0.054321 0.897 0.042171 -0.070115 0.848451 0.062052 0.019382 -0.013144 0.870986 0.107971 0.007899 -0.147341 0.025824 0.057405 0.76943 -0.008468 0.74943 0.196232 0.04587 -0.078526 0.383205 0.380263 0.158006 -0.210026 0.546259 0.16247 0.081245 -0.13618 0.285236 0.265129 0.313454 - ->H3k27me3_15 -0 0.923859 0.049081 0.027059 -0.030773 0.054177 0.89204 0.02301 -0.03561 0.710155 0 0.254236 -0.028979 0.845767 0.059673 0.06558 -0.01451 0.083137 0.902353 0 -0.016964 0.039033 0.495903 0.448099 -0.153442 0 0.821859 0.024698 -0.003027 0.016753 0.895212 0.085008 -0.827733 0.10104 0.033935 0.037292 - ->H3k27me3_16 -0.102 0.672 0.131 0.095 -0.093 0.096 0.679 0.132 -0.077 0.744 0.095 0.084 -0.097 0.13 0.118 0.655 -0.061 0.728 0.117 0.094 -0.097 0.696 0.095 0.112 -0.096 0.117 0.694 0.093 -0.111 0.091 0.713 0.085 -0.109 0.087 0.725 0.079 -0.113 0.091 0.694 0.102 - ->H3k27me3_17 -0.001 0.898 0.1 0.001 -0.001 0.001 0.997 0.001 -0.219 0.001 0.543 0.237 -0.164 0.001 0.674 0.161 -0.098 0.001 0.9 0.001 -0.116 0.001 0.882 0.001 -0.001 0.097 0.901 0.001 -0.001 0.001 0.997 0.001 - ->H3k27me3_18 -0.030606 0.828389 0.056442 0.084563 -0.111882 0.773152 0.089181 0.025784 -0.094575 0.059243 0.746942 0.09924 -0 0.954034 0.025967 0.019999 -0.043145 0.011024 0.74285 0.202981 -0.042381 0.028283 0.791169 0.138166 -0.05721 0.033757 0.878238 0.030795 -0.727749 0.098964 0 0.173287 -0.125497 0.038022 0.795772 0.040709 - ->H3k27me3_19 -0.102 0.084 0.712 0.102 -0.104 0.675 0.115 0.106 -0.095 0.097 0.705 0.103 -0.107 0.111 0.672 0.11 -0.105 0.09 0.102 0.703 -0.089 0.105 0.111 0.695 -0.11 0.108 0.105 0.677 -0.711 0.088 0.105 0.096 -0.713 0.108 0.107 0.072 -0.738 0.082 0.094 0.086 - ->H3k27me3_20 -0.051681 0.823102 0.058038 0.06718 -0.04667 0.806892 0.04487 0.101568 -0.086563 0.079983 0.716515 0.116939 -0.003699 0.809887 0.142735 0.04368 -0.038984 0.031869 0.817261 0.111886 -0.049845 0.892505 0.051869 0.005781 -0.11927 0.072643 0.0486 0.759487 -0.010058 0.048014 0.901099 0.040829 -0.064414 0.721648 0.116811 0.097128 - ->H3k27me3_21 -0.012404 0.145428 0.788559 0.05361 -0 0.987277 0 0.012723 -0.020786 0.03082 0.877875 0.070519 -0.004679 0.016532 0.812235 0.166554 -0.052582 0.039503 0.671561 0.236354 -0.163953 0.656069 0.01867 0.161309 -0.059608 0.148713 0.084866 0.706813 -0 0.985746 0.010521 0.003733 -0 0.859543 0.092123 0.048335 - ->H3k27me3_22 -0 0 0 1 -0.012876 0 0.980217 0.006906 -0.03792 0.004296 0.957784 0 -0.053699 0 0.946301 0 -0.94609 0.013517 0 0.040393 -0.128065 0.022685 0.84925 0 -0.111168 0.053925 0.043403 0.791504 -0.473428 0.497362 0.019718 0.009492 - ->H3k27me3_23 -0.035442 0.762288 0.041676 0.160594 -0.109849 0.043451 0.732698 0.114002 -0.077134 0.893037 0.008684 0.021145 -0.185442 0.038754 0.747105 0.028699 -0.06961 0.026831 0.817424 0.086134 -0.019668 0.030807 0.911916 0.037608 -0.097454 0.082235 0.705757 0.114554 -0.8089 0.044458 0.086125 0.060517 -0.13045 0.857966 0.011584 0 - ->H3k27me3_24 -0.037785 0.189216 0 0.772999 -0 1 0 0 -0 1 0 0 -0.036078 0 0.886905 0.077017 -0 0.124555 0.83069 0.044755 -0.015533 0 0.984467 0 -0.121058 0 0.067534 0.811408 -0 0.058872 0.879147 0.06198 -0.009905 0.87634 0 0.113755 - ->H3k27me3_25 -0.761215 0.084224 0 0.154562 -0 0.095532 0.904468 0 -0.091023 0.047337 0.83473 0.02691 -0.136245 0.016155 0.726058 0.121543 -0.02227 0.026057 0.859822 0.091851 -0.206104 0.269121 0.521486 0.003288 -0.029464 0.841482 0.031084 0.097971 -0.026948 0 0.952093 0.020958 -0.016535 0.907432 0.049712 0.026321 - ->H3k27me3_26 -0.049624 0.873643 0.028015 0.048718 -0.252582 0.665923 0.025361 0.056133 -0.045616 0.891054 0.018 0.04533 -0.030306 0.009068 0.941617 0.019009 -0.008131 0.031025 0.950739 0.010106 -0.849258 0.045227 0.042674 0.062842 -0.03959 0.891805 0.053673 0.014932 -0.323839 0.048021 0.609607 0.018533 -0.006592 0.972602 0.005527 0.015279 - ->H3k27me3_27 -0.088867 0.8221 0.044076 0.044957 -0.042556 0.797011 0.143696 0.016737 -0.009207 0.88788 0.087999 0.014914 -0.781947 0.038703 0.126388 0.052963 -0.012945 0.030843 0.855373 0.100839 -0.034445 0.812728 0.144246 0.008581 -0.131431 0.047159 0.066305 0.755105 -0.00705 0.819166 0.161102 0.012682 -0.094177 0.720151 0.081899 0.103773 -0.184854 0.39469 0.329478 0.090978 -0.058616 0.370292 0.535453 0.035639 -0.006249 0.262678 0.726294 0.004778 - ->H3k27me3_28 -0.237059 0.085644 0 0.677297 -0.036429 0 0.74756 0.216011 -0 0.685895 0 0.314105 -0 0.990671 0.009329 0 -0.822357 0.086003 0.09164 0 -0 0.938432 0.061568 0 -0 0.557102 0 0.442898 -0 0.961506 0.038494 0 -0.916383 0 0.083617 0 - ->H3k36me3_1 -0.412511 0.030259 0.427783 0.129446 -0.916679 0.062226 0.01331 0.007785 -0.004271 0.008974 0.001146 0.985609 -0.00015 0.88472 0.003421 0.111709 -0.642004 0.002774 0.3484 0.006822 -0 0.983702 0 0.016298 -0.002246 0.232527 0.025492 0.739734 -0.001817 0.047181 0.00822 0.942782 -0.018288 0.012159 0.969052 0.000501 -0.972232 0.005142 0.012633 0.009994 - ->H3k36me3_2 -0.003553 0.962184 0.021214 0.013049 -0.010587 0.007471 0.007149 0.974793 -0.056903 0.002065 0.940403 0.00063 -0.029341 0.127911 0.012368 0.83038 -0.785189 0.080043 0.121928 0.01284 -0.714592 0.118011 0.145336 0.022061 -0.004274 0.118391 0.008479 0.868856 -0.008939 0.958376 0.01189 0.020794 -0.008619 0.934744 0.005097 0.05154 -0.164029 0.677445 0.093925 0.064601 - ->H3k36me3_3 -0.06728 0.003463 0.928563 0.000695 -0.042745 0.00829 0.002542 0.946423 -0.7652 0.083152 0.151537 0.000111 -0.752591 0.056491 0.174836 0.016082 -0.037203 0.041632 0.061134 0.860031 -0.009265 0.953082 0.018104 0.019549 -0.012137 0.928617 0.003188 0.056058 -0 0.953697 0.002099 0.044204 -0.988637 0.00156 0.008536 0.001267 - ->H3k36me3_4 -0.002921 0.975182 0.019283 0.002614 -0.389395 0.000673 0.019729 0.590203 -0.009176 0.003798 0.9865 0.000525 -0.0083 0.017494 0.966122 0.008083 -0.860109 0.077394 0.019347 0.04315 -0.024896 0.006935 0.96517 0.002999 -0.02811 0.022893 0.022859 0.926139 -0.031456 0.018898 0.528436 0.42121 -0.023575 0.914853 0.018795 0.042778 -0.456293 0 0.543707 0 - ->H3k36me3_5 -0.040974 0.015834 0.806165 0.137026 -0.000482 0.951344 0.005066 0.043108 -0.003276 0.952792 0.001466 0.042467 -0.015066 0.000847 0.008931 0.975156 -0.001057 0.962622 0.011316 0.025005 -0.008398 0.962897 0.007132 0.021573 -0.012183 0.890617 0.008478 0.088722 -0.732122 0.079602 0.16567 0.022606 -0.720023 0.13387 0.126859 0.019248 - ->H3k36me3_6 -0.000676 0.978498 0.018077 0.002749 -0.007447 0.021657 0.001438 0.969458 -0.02526 0.005255 0.963432 0.006053 -0.07272 0.003095 0.908564 0.015622 -0.024316 0.245887 0.724174 0.005622 -0.023618 0.808526 0.050988 0.116868 -0.780085 0.03254 0.176005 0.01137 -0.838104 0.073281 0.055882 0.032733 -0.018699 0.895298 0.064705 0.021298 -0.882149 0.01584 0.017592 0.084419 - ->H3k36me3_7 -0.932231 0.007543 0.057018 0.003208 -0.033304 0.038088 0.898609 0.029999 -0.020811 0.019055 0.953415 0.00672 -0.972527 0.020669 0.004139 0.002664 -0.020958 0.000775 0.978098 0.000169 -0.720805 0.014303 0.264037 0.000855 -0.974348 0.006919 0.010349 0.008383 -0.03354 0.013051 0.120669 0.832741 -0.006406 0.879915 0.00736 0.10632 -0.309651 0.049391 0.629367 0.01159 -0.038361 0.93892 0 0.022719 -0 0.004613 0.003955 0.991433 - ->H3k36me3_8 -0.008194 0.049311 0.015898 0.926597 -0.090861 0.564763 0.035339 0.309037 -0.178644 0.025419 0.794867 0.001069 -0.952999 0.030655 0.002213 0.014134 -0.006241 0.038922 0.951929 0.002908 -0.870211 0.060451 0.062974 0.006364 -0.01117 0.937917 0.005864 0.045049 -0.124574 0.853348 0.009747 0.012331 -0.925735 0.044778 0.020247 0.00924 - ->H3k36me3_9 -0.904352 0.033657 0.020888 0.041103 -0.025522 0.316953 0.654973 0.002552 -0.60872 0.051391 0.110131 0.229758 -0.02877 0.868779 0.089199 0.013253 -0.011526 0.964667 0.011639 0.012168 -0.933367 0.006451 0.006633 0.053549 -0.008692 0.020278 0.96526 0.00577 -0.008984 0.884634 0.094607 0.011775 -0.018634 0.916658 0.007392 0.057316 -0.172494 0.135223 0.23282 0.459462 - ->H3k36me3_10 -0.919685 0.012377 0.043492 0.024446 -0.07339 0.006966 0.901569 0.018075 -0.02117 0.041673 0.927641 0.009516 -0.039129 0.872396 0.042334 0.046141 -0.106186 0.120244 0.071998 0.701573 -0.038702 0.053091 0.907428 0.00078 -0.686984 0.061773 0.191688 0.059555 -0.212205 0.012475 0.759124 0.016196 -0.052953 0.044408 0.887356 0.015283 - ->H3k36me3_11 -0.919696 0.003455 0.049962 0.026887 -0.694257 0.264183 0.018576 0.022983 -0.009563 0.960945 0.002416 0.027076 -0.024854 0.004572 0.001935 0.968639 -0.01113 0.925409 0.014847 0.048614 -0.000416 0.958359 0.033243 0.007983 -0.046887 0.036202 0.008047 0.908863 -0.025582 0.00419 0.968692 0.001536 -0.813344 0.020974 0.142688 0.022994 - ->H3k36me3_12 -0.000105 0.991402 0.007214 0.001279 -0.00254 0.001259 0.000272 0.995929 -0.001064 0.992408 0.004293 0.002235 -0 0.010284 0.002637 0.987079 -0.949042 0.024663 0.017051 0.009244 -0.006653 0.987799 0.000557 0.00499 -0.230691 0.031043 0.008711 0.729555 -0.944702 0.008495 0.037851 0.008953 -0.90633 0.089644 0.001487 0.002539 -0.854696 0.130088 0.009795 0.005422 - ->H3k36me3_13 -0.00307 0.670061 0.000684 0.326185 -0.248509 0.001502 0.728177 0.021812 -0 0.985736 0 0.014264 -0 0 0.050282 0.949718 -0.000754 0.003429 0.011552 0.984265 -0.019913 0 0.979321 0.000766 -0.989083 0.004283 0.004944 0.00169 -0.992549 0.000812 0.005428 0.001212 -0 0.989639 0 0.010361 -0.004247 0.932986 0.048163 0.014604 - ->H3k36me3_14 -0.81174 0.019665 0.140907 0.027687 -0.080253 0.047986 0.097927 0.773834 -0.019734 0.914965 0.03224 0.033061 -0.045194 0.878126 0.026402 0.050277 -0.008454 0.956647 0.005975 0.028924 -0.928903 0.015369 0.02804 0.027687 -0.031443 0.073964 0.883553 0.01104 -0.006821 0.844347 0.128921 0.019911 -0.685602 0.075362 0.010203 0.228833 -0.162236 0.589332 0.228093 0.020339 - ->H3k36me3_15 -0.882402 0.033396 0.068885 0.015316 -0.830804 0.119149 0.04082 0.009227 -0.831424 0.037807 0.111478 0.019291 -0.048734 0.195949 0.754178 0.001138 -0.035274 0.016171 0.019563 0.928992 -0.037379 0.136887 0.820595 0.005138 -0.01301 0.923482 0.038584 0.024925 -0.046365 0.003483 0.001277 0.948875 -0.031845 0.001009 0.959658 0.007488 - ->H3k36me3_16 -0.22142 0.661973 0.052298 0.064309 -0.065963 0.723622 0.168499 0.041916 -0.672261 0.085026 0.135066 0.107646 -0.047246 0.166603 0.767594 0.018557 -0.016197 0.846993 0.012173 0.124637 -0.058715 0.772271 0.146818 0.022196 -0.062856 0.034337 0.136185 0.766622 -0.079586 0.143703 0.67515 0.101561 -0.047924 0.130594 0.775836 0.045647 - ->H3k36me3_17 -0.05465 0.033561 0.893461 0.018328 -0.084497 0.018699 0.88612 0.010684 -0.006624 0.016727 0.958797 0.017852 -0.007727 0.018333 0.002741 0.971199 -0.02039 0.170582 0.042949 0.76608 -0.003044 0.009809 0.00288 0.984266 -0.000433 0.920931 0.000922 0.077714 -0.673304 0.014996 0.159279 0.152421 -0.001107 0.990042 0.004468 0.004383 -0.019357 0.577936 0.006314 0.396393 - ->H3k36me3_18 -0 0.973926 0.007321 0.018753 -0.950074 0.005704 0.007072 0.03715 -0.010533 0.040159 0.928987 0.020321 -0.028786 0.880034 0.034524 0.056655 -0.017522 0.033617 0.016692 0.932169 -0.796171 0.092793 0.062744 0.048293 -0.069759 0.915717 0.001579 0.012946 -0.064312 0.01818 0.006552 0.910956 -0.013023 0.635436 0.094048 0.257493 -0.506109 0.152271 0.317617 0.024004 - ->H3k36me3_19 -0.009099 0.768966 0.174896 0.04704 -0.005736 0.949914 0.009358 0.034992 -0.008481 0.699832 0.004802 0.286885 -0.637203 0.048626 0.304202 0.00997 -0.700166 0.085486 0.129955 0.084392 -0.005993 0 0.994007 0 -0.022416 0.026348 0.030887 0.920349 -0.899538 0.006936 0.040875 0.052651 -0.034571 0.027553 0.922674 0.015202 -0.012281 0.974302 0.003413 0.010005 - ->H3k36me3_20 -0 0.954634 0.020821 0.024545 -0.959916 0.010502 0.01948 0.010102 -0 0.964407 0.004213 0.031381 -0.006762 0.006861 0.034083 0.952295 -0.001316 0.022362 0.188212 0.78811 -0.004588 0.039112 0.052845 0.903455 -0.097028 0.008342 0.887728 0.006902 -0.035378 0.005466 0.920855 0.038301 -0.062433 0.039808 0.892798 0.004961 - ->H3k36me3_21 -0.859214 0.02391 0.093131 0.023745 -0.011283 0.67469 0.030872 0.283154 -0.222336 0.011084 0.646888 0.119693 -0.018063 0.914944 0.018984 0.048009 -0.005282 0.966931 0.012938 0.01485 -0.018928 0.00973 0.005204 0.966138 -0.042841 0.025086 0.931121 0.000953 -0.078391 0.025731 0.053763 0.842115 -0.868978 0.057046 0.069564 0.004412 - ->H3k36me3_22 -0.60841 0.005091 0.2906 0.095899 -0.003456 0.99488 0.001023 0.00064 -0.004149 0.698563 0.081454 0.215835 -0.873008 0.0357 0.090623 0.00067 -0.138171 0.03005 0.009922 0.821856 -0.001478 0.068544 0.92731 0.002668 -0.025352 0 0.005404 0.969244 -0.16004 0.005446 0.031354 0.803159 -0.002049 0.037332 0.957441 0.003178 - ->H3k36me3_23 -0.016215 0.899832 0.033387 0.050566 -0.894176 0.061417 0.013931 0.030477 -0.000727 0.981877 0.014869 0.002526 -0.093005 0.057132 0.09865 0.751213 -0.026234 0.644096 0.256871 0.072798 -0.007867 0.906725 0.066711 0.018698 -0.755779 0.044818 0.031628 0.167774 -0.11542 0.054551 0.724506 0.105524 -0.014303 0.901416 0.055745 0.028536 - ->H3k36me3_24 -0.101078 0.638138 0.230415 0.03037 -0.04837 0.189042 0.164568 0.598021 -0.003459 0.929466 0.046241 0.020833 -0.909886 0.040184 0.017452 0.032478 -0 0.985452 0.010825 0.003723 -0.02308 0.035562 0.017328 0.924031 -0.026869 0.195428 0.681141 0.096562 -0.013393 0.791357 0.110883 0.084367 -0.852359 0.066776 0.030189 0.050677 - ->H3k36me3_25 -1 0 0 0 -0.997517 0 0.001911 0.000572 -0.989396 0.010604 0 0 -0.997988 0 0.002012 0 -0 0.004599 0.009508 0.985893 -0.002489 0.022044 0.007222 0.968244 -1 0 0 0 -0 0 1 0 - ->H3k36me3_26 -0 0.050941 0.9481 0.000958 -0.917975 0.004396 0.04399 0.033638 -0.080107 0.01739 0.009995 0.892508 -0.003122 0.910747 0.071006 0.015124 -0.856541 0.004123 0.092481 0.046855 -0 0.954192 0.021677 0.024131 -0.324062 0.003366 0.672572 0 -0.007931 0.891422 0.022519 0.078128 -0.019644 0.947779 0.008891 0.023686 -0.801951 0.055033 0.13526 0.007756 -0.064093 0.803326 0.002803 0.129778 - ->H3k36me3_27 -0.977359 0.010318 0.003964 0.008359 -0.003647 0.0648 0.922837 0.008716 -0.02984 0.134662 0.678923 0.156574 -0.057661 0.09916 0.035379 0.8078 -0.068183 0.827109 0.101843 0.002865 -0.944543 0.002283 0.03896 0.014213 -0.2072 0.0287 0.760046 0.004054 -0.072374 0.025213 0.887926 0.014487 -0.871529 0.014581 0.070648 0.043242 - ->H3k36me3_28 -0.001057 0.012283 0.98666 0 -0.080845 0.003927 0.914187 0.001042 -0.053964 0.89972 0.009015 0.037301 -0.584604 0.017961 0.397435 0 -0.000917 0.011319 0.987138 0.000625 -0.968632 0.013738 0.008291 0.009339 -0.006691 0 0.111601 0.881708 -0.001018 0.961972 0.025565 0.011445 -0.944747 0 0.055253 0 - ->H3k36me3_29 -0.919554 0.010718 0.050146 0.019582 -0.026146 0.922507 0.035952 0.015394 -0.038863 0.669532 0.038846 0.252759 -0.089452 0.798815 0.071686 0.040047 -0.003881 0.209842 0.009636 0.776641 -0.163106 0.038113 0.792181 0.0066 -0.008861 0.069439 0.010575 0.911125 -0.008895 0.891756 0.073583 0.025765 -0.042975 0.048174 0.02657 0.882281 - ->H3k36me3_30 -0.005893 0.014907 0.9792 0 -0.70184 0.008031 0 0.290129 -0.045003 0.012658 0.940072 0.002267 -0.015291 0.001339 0.983371 0 -0.023043 0.009685 0.004654 0.962617 -0.001328 0.011501 0.584003 0.403169 -0.009777 0.004999 0.978982 0.006243 -0.014365 0.929085 0.045343 0.011207 -0.965775 0.006529 0.009204 0.018492 -0 0.480552 0.457615 0.061833 - ->H3k36me3_31 -0.00587 0.212446 0.771873 0.009811 -0.013448 0.024481 0 0.962071 -0.018008 0.085861 0.223536 0.672595 -0.001198 0.066174 0.029182 0.903447 -0 0.928497 0.015111 0.056392 -0.685426 0.032575 0.123895 0.158104 -0.00504 0.949661 0.010899 0.0344 -0.000889 0.93481 0.004957 0.059345 -0.938088 0.016945 0.018351 0.026615 -0.002431 0.058992 0.241834 0.696743 - ->H3k36me3_32 -0.027825 0.835602 0.030067 0.106506 -0.147398 0.016565 0.015743 0.820294 -0.01865 0.017184 0.96346 0.000705 -0.811514 0.017567 0.103109 0.06781 -0.058709 0.010857 0.923336 0.007097 -0.22332 0.067862 0.702356 0.006463 -0.077166 0.812135 0.020988 0.08971 -0.794925 0.063402 0.106321 0.035352 -0.076781 0.017228 0.896096 0.009896 - ->H3k36me3_33 -0.28239 0.00308 0.66605 0.04848 -0.006395 0.980825 0.005253 0.007527 -0.943723 0.019739 0.007425 0.029113 -0.023457 0.026908 0.949635 0 -0.024511 0.045941 0.040224 0.889324 -0.087171 0.001414 0.90956 0.001856 -0.032953 0.086727 0.858562 0.021758 -0.043944 0.756823 0.004067 0.195166 -0.530697 0.017996 0.373231 0.078076 - ->H3k36me3_34 -1 0 0 0 -0.899924 0.012201 0.077813 0.010061 -0.983382 0.003567 0.010553 0.002498 -0.054735 0.942875 0.00239 0 -0.020183 0.708769 0.085405 0.185643 -0.010158 0.836989 0.004265 0.148587 -0.015848 0.933207 0.000393 0.050552 -0.834088 0.002349 0.160635 0.002928 -0 0.130753 0.006978 0.862269 - ->H3k36me3_35 -0.010712 0.847385 0.035623 0.10628 -0.003611 0.856391 0.005876 0.134122 -0.705357 0.008514 0.215873 0.070257 -0 0.076906 0.003708 0.919386 -0.010812 0.940153 0.010889 0.038146 -0.019558 0.011158 0.009881 0.959402 -0 0.912582 0.069699 0.017719 -0.205869 0.167232 0.034953 0.591946 -0.809279 0.042703 0.116952 0.031065 - ->H3k36me3_36 -0.774845 0.020892 0.188444 0.015819 -0.046869 0.046224 0.892087 0.014819 -0.038936 0.093175 0.711246 0.156643 -0.024784 0.926375 0.019708 0.029133 -0.845001 0.013071 0.106818 0.03511 -0.02403 0.044879 0.742407 0.188685 -0.021144 0.070082 0.903262 0.005513 -0.789184 0.064255 0.013028 0.133533 -0.057027 0.015332 0.894381 0.03326 - ->H3k36me3_37 -0.892006 0.050529 0.004518 0.052947 -0.929454 0.004419 0.02214 0.043986 -0.026154 0.889842 0.073229 0.010774 -0.916297 0.001224 0.062965 0.019515 -0.006583 0.293303 0.153373 0.546741 -0.794208 0.068959 0.115636 0.021197 -0.002683 0.179151 0.809093 0.009073 -0.053853 0.165226 0.049169 0.731753 -0.025423 0.002331 0.961049 0.011197 - ->H3k36me3_38 -0.611015 0.381214 0.004009 0.003763 -0.952794 0.025639 0.009368 0.012199 -0.153521 0.82543 0.012908 0.008141 -0.069069 0.848914 0.062295 0.019722 -0.021454 0.009984 0.010235 0.958328 -0.003052 0.943686 0.009798 0.043464 -0.015209 0.766826 0.152517 0.065448 -0.029932 0.046145 0.858404 0.065519 -0.006437 0.773855 0.007769 0.21194 - ->H3k36me3_39 -0 0.997159 0.001235 0.001606 -0.070598 0.018906 0 0.910496 -0.080071 0.670981 0.016896 0.232052 -0.847996 0.086118 0.004285 0.061601 -0.941722 0 0.058278 0 -0.945067 0 0.054022 0.000911 -0.947439 0.042437 0.006122 0.004001 -0.950897 0.042896 0.004833 0.001374 -0.972425 0.027575 0 0 -0.808207 0.189053 0.00274 0 - ->H3k36me3_40 -0 0.488302 0 0.511698 -0.326084 0.045974 0.555576 0.072367 -0 0.902679 0.003992 0.093329 -0.048088 0.945195 0.002591 0.004127 -0 0.948647 0.00164 0.049713 -0.930135 0.00143 0.056366 0.012069 -0 0.014649 0.981362 0.003989 -0.006494 0.989833 0.003673 0 -0 0.104576 0.001271 0.894152 -0.96452 0.0203 0.015181 0 - ->H3k36me3_41 -0.001894 0.950087 0.025304 0.022715 -0.921449 0.018594 0.03558 0.024377 -0.005648 0.941668 0.008425 0.044259 -0.00218 0.914476 0.023949 0.059394 -0.846917 0.039877 0.093493 0.019713 -0.02074 0.313675 0.06233 0.603255 -0.090929 0.028919 0.87049 0.009662 -0.020382 0.76811 0.015853 0.195655 -0.003603 0.882984 0.0047 0.108713 -0.11662 0.479464 0.102319 0.301596 - ->H3k36me3_42 -0.810977 0.004871 0.159193 0.024959 -0.011096 0.955056 0.019831 0.014016 -0.015746 0.961809 0.005249 0.017197 -0.076484 0.013566 0.007299 0.902651 -0 0.989289 0.010711 0 -0.886521 0.031408 0.079126 0.002945 -0.255718 0.06 0.597657 0.086624 -0.097263 0.042865 0.77098 0.088892 -0.026254 0.006217 0.021618 0.945911 - ->H3k36me3_43 -0.006143 0.003397 0.963095 0.027365 -0.064462 0.848995 0 0.086543 -0.274996 0.004109 0.202708 0.518186 -0.00106 0.965502 0.015939 0.017499 -0.834139 0.036895 0.126006 0.00296 -0.01903 0.222489 0.011339 0.747143 -0.196842 0.013587 0.781826 0.007745 -0.001173 0.95275 0.011071 0.035006 -0.006254 0.985028 0.004546 0.004172 - ->H3k36me3_44 -0.10144 0.56942 0.095451 0.233689 -0.11475 0.008777 0.699136 0.177337 -0.009882 0.005122 0.015821 0.969174 -0.013055 0.004043 0.972658 0.010244 -0.88118 0.040719 0.010247 0.067853 -0.063349 0.016347 0.798433 0.121871 -0.016712 0.94582 0.019492 0.017976 -0.009032 0.91158 0.004368 0.07502 -0.850769 0.129613 0.005472 0.014146 - ->H3k36me3_45 -0.025097 0.879699 0.024053 0.071151 -0.108123 0.03167 0.04076 0.819447 -0.01298 0.878373 0.090374 0.018274 -0.027724 0.038849 0.007367 0.92606 -0.013234 0.007289 0.965278 0.014199 -0.021564 0.046201 0.01581 0.916424 -0.042964 0.639999 0.120265 0.196773 -0.595976 0.200519 0.160376 0.043129 -0.008453 0.940496 0.012248 0.038804 -0.061462 0.542457 0.137743 0.258339 - ->H3k36me3_46 -0.114206 0.108627 0.775148 0.00202 -0.040201 0.849107 0.075996 0.034697 -0.891444 0.020683 0.048754 0.039119 -0.053378 0.047139 0.897656 0.001827 -0.091474 0.040686 0.866214 0.001626 -0.674014 0.107546 0.008192 0.210248 -0.166723 0.022014 0.806289 0.004974 -0.067126 0.021483 0.904298 0.007093 -0.804812 0.136065 0.020322 0.0388 - ->H3k36me3_47 -0.024889 0.105094 0.767292 0.102726 -0.912153 0.006795 0.081053 0 -0.013073 0.009563 0.940711 0.036653 -0.010903 0.935927 0.05317 0 -0 0.159601 0.006981 0.833418 -0.293496 0.120075 0.586429 0 -0.007238 0.023724 0.002171 0.966867 -0 0.021055 0.971398 0.007547 -0.589138 0.04026 0.035987 0.334615 -0.006491 0.013307 0 0.980203 - ->H3k36me3_48 -0.934702 0 0.062228 0.00307 -0.003373 0.970668 0.001714 0.024245 -0.356315 0.39856 0.245125 0 -0 0.003698 0 0.996302 -0.000898 0.003489 0.995613 0 -0.003142 0.029837 0.937759 0.029262 -0.014567 0.971985 0.007442 0.006006 -0.147584 0.026321 0.163884 0.66221 -0.655472 0.018438 0.083972 0.242118 - ->H3k36me3_49 -0.759851 0.087607 0.048312 0.10423 -0.024825 0.934356 0.030984 0.009836 -0.003299 0.980731 0.010745 0.005226 -0.842888 0.080928 0.066673 0.009511 -0.00237 0.978292 0.008187 0.011152 -0.85562 0.068684 0.020269 0.055427 -0.038686 0.766025 0.064353 0.130936 -0.136724 0.652591 0.163121 0.047564 -0.020079 0.82756 0.106334 0.046027 -0.339958 0.044072 0.449717 0.166253 -0.002456 0.023074 0.87749 0.096979 -0.003583 0.779471 0.203144 0.013801 - ->H3k36me3_50 -0.128161 0.129664 0.713792 0.028383 -0.004565 0.9862 0.001003 0.008232 -0.798998 0.081084 0.042152 0.077766 -0.004875 0.778633 0.205189 0.011303 -0.019553 0.939324 0.020115 0.021008 -0.868394 0.018873 0.066862 0.045871 -0.003594 0.874075 0.063006 0.059324 -0.008774 0.86022 0.035407 0.095598 -0.811466 0.007365 0.141121 0.040049 - ->H3k36me3_51 -0.737976 0.018171 0.130776 0.113077 -0.011037 0.085834 0.898712 0.004417 -0.028514 0.031026 0.073368 0.867093 -0.011541 0.027051 0.951167 0.010241 -0.842861 0.009248 0.085301 0.06259 -0.027145 0.063794 0.689289 0.219772 -0.020781 0.880483 0.088308 0.010428 -0.12984 0.012688 0.024012 0.83346 -0 0.012803 0.971691 0.015507 - ->H3k36me3_52 -0.015139 0.34128 0.00703 0.636552 -0.705418 0.180077 0.07348 0.041025 -0 0.978434 0.014328 0.007238 -0.176047 0.203605 0.000578 0.619769 -0.003157 0.895704 0.097982 0.003157 -0.879347 0.005983 0.037696 0.076973 -0.054011 0.024876 0.919087 0.002026 -0.082555 0.068701 0.827464 0.02128 -0.782412 0.02585 0.008528 0.18321 - ->H3k36me3_53 -0.101 0.587 0.141 0.171 -0.073 0.1 0.678 0.149 -0.348 0.2 0.102 0.35 -0.178 0.476 0.055 0.291 -0.042 0.226 0.705 0.027 -0.85 0.034 0.065 0.051 -0.025 0.65 0.115 0.21 -0.184 0.081 0.705 0.03 - ->H3k36me3_54 -0.135136 0.697312 0.074937 0.092615 -0 0.947702 0.044472 0.007827 -0.029985 0.931444 0.029358 0.009212 -0.628134 0.001826 0.01032 0.359719 -0 0.938682 0.030387 0.030932 -0.078092 0.814343 0.022242 0.085322 -0.014109 0.045762 0.005665 0.934464 -0 0.943892 0.056108 0 -0.010588 0.148248 0.784909 0.056254 -0.320235 0.016901 0.521988 0.140877 - ->H3k36me3_55 -0.706908 0.042083 0.075769 0.17524 -0.013156 0.001979 0.950923 0.033942 -0.00974 0.851683 0.135991 0.002586 -0.035698 0.955895 0.008407 0 -0.726227 0.007418 0.245694 0.020661 -0 0.067194 0.922738 0.010068 -0.081936 0.063635 0.834154 0.020275 -0.014378 0.785319 0.011176 0.189127 -0.944722 0.01517 0.010148 0.02996 - ->H3k36me3_56 -0.923371 0.040613 0.035004 0.001011 -0.834497 0.090343 0.04551 0.029651 -0.007527 0.030823 0.959929 0.001721 -0.125878 0 0.870903 0.003219 -0.007889 0.832338 0 0.159773 -0.025808 0.084089 0.857356 0.032747 -0.029025 0.001524 0.962293 0.007158 -0.014345 0.238691 0.738412 0.008552 -0.018055 0.714245 0.101775 0.165925 - ->H3k4me1_1 -0.021 0.018 0.002 0.959 -0.041 0.136 0.015 0.808 -0.245 0.001 0.014 0.74 -0.243 0.078 0.666 0.013 -0.142 0.835 0.002 0.021 -0.878 0.04 0.001 0.081 -0.256 0.026 0.021 0.697 -0.34 0.116 0.217 0.327 -0.452 0.062 0.114 0.373 -0.085 0.464 0.321 0.13 -0.863 0.072 0.002 0.063 -0.805 0.071 0.091 0.033 - ->H3k4me1_2 -0.126221 0.096725 0.652362 0.124692 -0.157713 0.76706 0.074905 0.000322 -0.123264 0.011594 0.004509 0.860634 -0.006538 0.043494 0.947226 0.002742 -0.850792 0.026025 0.048173 0.07501 -0.029324 0.225233 0.739268 0.006175 -0.048641 0.103353 0.059443 0.788562 -0.091813 0.767385 0.096649 0.044154 -0.823017 0.070473 0.006845 0.099666 - ->H3k4me1_3 -0.142656 0.046092 0.628207 0.183044 -0.077532 0.721399 0.068271 0.132798 -0.862808 0.039974 0.036854 0.060365 -0.01964 0.009924 0.018916 0.95152 -0.053006 0 0.025394 0.9216 -0.033778 0.023827 0.012824 0.929571 -0.123322 0.106461 0.047877 0.72234 -0.764536 0.032298 0.029472 0.173695 -0.754843 0.118183 0.056065 0.070909 diff --git a/data/universal_motifs.fasta b/data/universal_motifs.fasta new file mode 100644 --- /dev/null +++ b/data/universal_motifs.fasta @@ -0,0 +1,6260 @@ +>tree0.2_0_GGAKATWATMTC +0.001 0.001 0.997 0.001 +0.001 0.003 0.995 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.474 0.524 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.507 0.001 0.009 0.483 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.489 0.509 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 + +>tree0.2_1_CTCCCTAAAATG +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.037 0.961 0.001 0.001 +0.001 0.954 0.001 0.044 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.935 0.001 0.059 0.005 +0.993 0.001 0.001 0.005 +0.997 0.001 0.001 0.001 +0.001 0.014 0.001 0.984 +0.072 0.001 0.926 0.001 + +>tree0.2_2_TGCCTWAACYGA +0.001 0.103 0.001 0.895 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.446 0.001 0.001 0.552 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.957 0.041 0.001 +0.001 0.446 0.001 0.552 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_3_NAAACTTAAGTN +0.15 0.162 0.383 0.305 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.964 0.001 0.034 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.117 0.184 0.333 0.366 + +>tree0.2_4_GAAACTKCTTTGT +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.01025 0.0585 0.93025 +0.001 0.001 0.499 0.499 +0.001 0.997 0.001 0.001 +0.0085 0.001 0.0015 0.989 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_5_CGGACWCTCTTT +0.001 0.997 0.001 0.001 +0.001 0.12 0.788 0.091 +0.001 0.001 0.861 0.137 +0.997 0.001 0.001 0.001 +0.137 0.803 0.001 0.059 +0.375 0.001 0.001 0.623 +0.001 0.997 0.001 0.001 +0.001 0.196 0.001 0.802 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 + +>tree0.2_6_AAAASAGTGTTTC +0.997 0.001 0.001 0.001 +0.995875 0.001375 0.00175 0.001 +0.971 0.02475 0.00175 0.0025 +0.989875 0.001375 0.007375 0.001375 +0.0022500000000000003 0.38225 0.6145 0.001 +0.9915 0.004125 0.001 0.003375 +0.0023750000000000004 0.233875 0.7621249999999999 0.001625 +0.013875000000000002 0.001 0.00175 0.983375 +0.00175 0.0795 0.917 0.00175 +0.001875 0.0025 0.001875 0.99375 +0.001125 0.001 0.001 0.996875 +0.001 0.0015 0.0015 0.996 +0.007000000000000001 0.7665 0.0125 0.214 + +>tree0.2_7_CRAAAASAGTGT +0.001 0.997 0.001 0.001 +0.6105 0.038 0.3505 0.001 +0.85432825 0.07225 0.00174725 0.07167449999999999 +0.91697175 0.07722175 0.00194375 0.00386275 +0.98480975 0.008608000000000001 0.005832250000000001 0.00075 +0.8295174999999999 0.01547925 0.07183750000000001 0.08316575000000001 +0.0171595 0.634059 0.3449695 0.003812 +0.79377575 0.1401455 0.03825 0.0278285 +0.00075 0.023721 0.974779 0.00075 +0.00075 0.003666 0.0173815 0.97820275 +0.0005 0.0005 0.9985 0.0005 +0.002 0.081 0.142 0.775 + +>tree0.2_8_GTGGTTGAAGTC +0.039 0.001 0.959 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.991 0.007 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 + +>tree0.2_9_CTCTTGCATCAG +0.001 0.844 0.084 0.071 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.001 0.937 0.001 0.061 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.974 0.001 0.024 +0.991 0.001 0.007 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_10_GCTGCTGAAAGC +0.001 0.001 0.997 0.001 +0.001 0.924 0.074 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.001 0.753 0.001 0.245 +0.001 0.001 0.001 0.997 +0.001 0.001 0.828 0.17 +0.997 0.001 0.001 0.001 +0.712 0.286 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_11_ACSGGCTTAAAA +0.978 0.001 0.02 0.001 +0.001 0.902 0.001 0.096 +0.063 0.373 0.518 0.046 +0.003 0.001 0.995 0.001 +0.001 0.003 0.995 0.001 +0.001 0.995 0.001 0.003 +0.001 0.001 0.001 0.997 +0.001 0.001 0.012 0.986 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_12_RGGCGCTTTAAA +0.492 0.075 0.283 0.15 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.9605 0.0375 +0.001 0.8400000000000001 0.001 0.158 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.707 0.1795 0.038 0.0755 + +>tree0.2_13_GGAGCTGTAGAC +0.001 0.001 0.997 0.001 +0.001 0.1385 0.857 0.0035 +0.856625 0.1385 0.003125 0.00175 +0.00325 0.001 0.855 0.14075 +0.001 0.996 0.001 0.002 +0.001 0.00175 0.001 0.99625 +0.019625 0.001 0.978375 0.001 +0.001 0.0345 0.001 0.9635 +0.99325 0.001 0.004750000000000001 0.001 +0.00375 0.00125 0.990875 0.004125 +0.996625 0.001375 0.001 0.001 +0.001 0.995125 0.001 0.0028750000000000004 + +>tree0.2_14_TCCTTTCAGAGC +0.001 0.001 0.001 0.997 +0.001 0.746 0.001 0.252 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_15_TTTGAAAGGAAA +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.087 0.186 0.618 0.109 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.136 0.862 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_16_GAGTGTTTCAAA +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.012 0.001 0.001 0.986 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.867 0.131 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_17_TGTAACAMAC +0.028019 0.065432 0.003371 0.903178 +0.00141 0.017386 0.981203 0 +0.032989 0 0.003704 0.963307 +0.928316 0.001123 0.005606 0.064956 +0.956969 0.037228 0.004298 0.001506 +0 0.902481 0.074965 0.022553 +0.836504 0 0.125675 0.03782 +0.60009 0.371306 0.01373 0.014874 +0.851231 0.01593 0.007354 0.125485 +0.052765 0.792406 0.007954 0.146875 + +>tree0.2_18_RTTTTACA +0.35349 0.188786 0.457724 0 +0 0 0.027122 0.972878 +0 0.002635 0.029208 0.968157 +0 0 0 1 +0 0.028862 0 0.971138 +0.886253 0.113747 0 0 +0.163319 0.821976 0 0.014705 +0.956101 0 0 0.043899 + +>tree0.2_19_GCGCCTTTTAAA +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.089 0.909 0.001 +0.001 0.806 0.07 0.123 +0.001 0.704 0.001 0.294 +0.001 0.027 0.027 0.945 +0.001 0.027 0.027 0.945 +0.069 0.001 0.001 0.929 +0.027 0.001 0.075 0.897 +0.971 0.001 0.001 0.027 +0.997 0.001 0.001 0.001 +0.89 0.001 0.082 0.027 + +>tree0.2_20_NGGCTTGTAAAA +0.427 0.158 0.193 0.221 +0.176 0.086 0.651 0.087 +0.028 0.203 0.76 0.009 +0.001 0.876 0.122 0.001 +0.001 0.163 0.001 0.835 +0.001 0.001 0.015 0.983 +0.001 0.001 0.916 0.082 +0.001 0.045 0.001 0.953 +0.962 0.001 0.001 0.036 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.884 0.057 0.058 0.001 + +>tree0.2_21_AAATAAACAGCC +0.997 0.001 0.001 0.001 +0.976 0.022 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.814 0.001 0.184 + +>tree0.2_22_AWGCAAACAGCT +0.794 0.001 0.125 0.08 +0.603 0.001 0.041 0.355 +0.033 0.001 0.921 0.045 +0.001 0.709 0.176 0.114 +0.955 0.001 0.001 0.043 +0.911 0.032 0.056 0.001 +0.898 0.001 0.094 0.007 +0.009 0.863 0.008 0.12 +0.826 0.001 0.001 0.172 +0.001 0.001 0.997 0.001 +0.001 0.965 0.001 0.033 +0.023 0.098 0.001 0.878 + +>tree0.2_23_ATACGAACAGCT +0.997 0.001 0.001 0.001 +0.239 0.001 0.001 0.759 +0.996 0.002 0.001 0.001 +0.001 0.849 0.149 0.001 +0.038 0.001 0.96 0.001 +0.991 0.001 0.001 0.007 +0.751 0.001 0.001 0.247 +0.086 0.912 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.239 0.759 0.001 +0.001 0.727 0.129 0.143 +0.001 0.001 0.002 0.996 + +>tree0.2_24_AGCCTGTTTGGT +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.069 0.001 0.929 0.001 +0.031 0.001 0.967 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_25_CGTCAGRCCTCT +0.001 0.963 0.001 0.035 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.386 0.001 0.612 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_26_TSCGGCCTCTGA +0.001 0.001 0.001 0.997 +0.001 0.613 0.385 0.001 +0.317 0.681 0.001 0.001 +0.001 0.001 0.997 0.001 +0.147 0.001 0.851 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.295 0.001 0.703 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_27_GCAGAAGTYTGCTG +0.001 0.001 0.883 0.115 +0.004999999999999999 0.9875 0.0022500000000000003 0.00525 +0.9965 0.001 0.001 0.0015 +0.02025 0.001 0.97725 0.0015 +0.92375 0.074 0.00125 0.001 +0.98525 0.00325 0.008125 0.003375 +0.218125 0.001 0.777875 0.003 +0.0725 0.043875 0.0645 0.819375 +0.004 0.514125 0.0022500000000000003 0.479625 +0.006750000000000001 0.00525 0.001 0.987 +0.010625 0.001 0.835375 0.153 +0.004750000000000001 0.975125 0.00125 0.018875000000000003 +0.00475 0.00175 0.0032500000000000003 0.99025 +0.048 0.001 0.932 0.019 + +>tree0.2_28_TCCGCACCTCTC +0.001 0.001 0.001 0.997 +0.001 0.977 0.001 0.021 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 + +>tree0.2_29_CCCCCCCCCCYTTC +0.001 0.997 0.001 0.001 +0.05575 0.8220000000000001 0.053 0.06925 +0.03912500000000001 0.911125 0.019375 0.030375 +0.093875 0.859375 0.0165 0.03025 +0.092625 0.8274999999999999 0.047875 0.032 +0.04225 0.6795 0.231875 0.046375 +0.02025 0.909 0.027125 0.043625 +0.010875 0.927625 0.023 0.0385 +0.016875 0.936 0.014625 0.0325 +0.0205 0.90475 0.01375 0.061 +0.02225 0.449 0.0165 0.51225 +0.0245 0.29 0.022125 0.663375 +0.039999999999999994 0.062875 0.032875 0.86425 +0.06 0.792 0.055 0.093 + +>tree0.2_30_ATAGGTGTGAGC +0.887 0.02 0.033 0.06 +0.022 0.009 0.001 0.968 +0.942 0.001 0.033 0.024 +0.001 0.001 0.997 0.001 +0.063 0.058 0.836 0.043 +0.018 0.249 0.031 0.702 +0.014 0.01 0.975 0.001 +0.018 0.016 0.001 0.965 +0.02 0.012 0.967 0.001 +0.982 0.016 0.001 0.001 +0.054 0.013 0.853 0.08 +0.001 0.923 0.016 0.06 + +>tree0.2_31_NCNGAGCGAGACSCNS +0.4194845 0.2633395 0.2916805 0.025495499999999997 +0.0206815 0.7146140000000001 0.256423 0.0082815 +0.4101145 0.275301 0.288485 0.0260995 +0.013534 0.155484 0.8191495 0.011832 +0.7003790000000001 0.1492135 0.131172 0.0192355 +0.023989499999999997 0.0269 0.945083 0.004028 +0.0594915 0.8198190000000001 0.0756675 0.0450225 +0.0659265 0.1542575 0.7553635 0.0244525 +0.574316 0.189124 0.181246 0.055314 +0.031656500000000004 0.0318405 0.933653 0.0028495 +0.5879795 0.151124 0.2456255 0.0152705 +0.0397185 0.872909 0.0741565 0.0132165 +0.063023 0.37009 0.396516 0.1703705 +0.1073775 0.5163915 0.22533 0.1509005 +0.085971 0.254602 0.294599 0.364828 +0.015788 0.290484 0.527051 0.166677 + +>tree0.2_32_GGNCCAGAGGCAGYNN +0.229298 0.030664 0.641227 0.098811 +0.107613 0.25369 0.60049 0.038206 +0.18408 0.411687 0.282997 0.121236 +0.08351 0.580318 0.258194 0.077977 +0.018191 0.93872 0.021942 0.021148 +0.858058 0.06174 0.042061 0.038141 +0.065244 0.240758 0.692834 0.001163 +0.897761 0.017289 0.035139 0.049811 +0.014069 0.018241 0.952821 0.014869 +0.050149 0.108101 0.734788 0.106961 +0.120859 0.810538 0.048401 0.020202 +0.813925 0.058771 0.074034 0.05327 +0.05272 0.071101 0.85773 0.018449 +0.079119 0.541164 0.108184 0.271533 +0.382078 0.333074 0.278876 0.005972 +0.236111 0.032541 0.467558 0.263789 + +>tree0.2_33_GAAGCGCAAGGG +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.858 0.001 0.14 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.002 0.996 0.001 + +>tree0.2_34_TCGGCTGCGCTC +0.049 0.016 0.001 0.934 +0.027 0.719 0.079 0.175 +0.001 0.001 0.824 0.174 +0.009 0.001 0.989 0.001 +0.001 0.989 0.009 0.001 +0.025 0.081 0.001 0.893 +0.001 0.074 0.924 0.001 +0.106 0.892 0.001 0.001 +0.009 0.001 0.989 0.001 +0.009 0.965 0.001 0.025 +0.001 0.001 0.001 0.997 +0.001 0.874 0.076 0.049 + +>tree0.2_35_NCGGAGCGCTCC +0.169 0.258 0.314 0.258 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.113 0.605 0.169 0.113 + +>tree0.2_36_GGAGCNCWTTGA +0.02880875 0.02869175 0.9047205 0.03777925 +0.02408525 0.121202875 0.838702125 0.016009625 +0.9319475 0.0110444375 0.01246946875 0.044538499999999995 +0.04967015625000001 0.0448913125 0.86524175 0.04019671875 +0.05519384375 0.81101115625 0.028080562500000003 0.10571453125 +0.2461185 0.17265709375 0.45831675 0.12262628124999998 +0.024078406250000003 0.880958 0.033203937499999996 0.06175946875 +0.35522428125 0.04225721875 0.0300920625 0.572426375 +0.0099269375 0.050465625 0.050278187499999995 0.88932921875 +0.045469687499999994 0.018282624999999997 0.03376853125 0.9024791875 +0.05892165625 0.026567875000000005 0.89931715625 0.015193124999999998 +0.851214125 0.082067 0.04936825 0.017350625 + +>tree0.2_37_GAACCCGGTACC +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.713 0.001 0.285 +0.001 0.711 0.287 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.273 0.725 0.001 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_38_ACTCGGGTTGAT +0.9925 0.001 0.001 0.0055 +0.068 0.9245 0.004 0.0035 +0.003 0.0015 0.001 0.9945 +0.001 0.997 0.001 0.001 +0.0165 0.0035 0.979 0.001 +0.0505 0.001 0.9475 0.001 +0.001 0.001 0.9755 0.0225 +0.0255 0.0015 0.0035 0.9695 +0.004 0.001 0.0095 0.9855 +0.002 0.0125 0.9635 0.022 +0.971 0.001 0.001 0.027 +0.0085 0.0015 0.001 0.989 + +>tree0.2_39_TCGGCCCGAG +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.066 0.001 0.932 0.001 + +>tree0.2_40_MTCCTGGCTCAW +0.547 0.373 0.001 0.079 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.546 0.001 0.001 0.452 + +>tree0.2_41_GATGAACCCGGK +0.008 0.002 0.989 0.001 +0.793727837890625 0.015589010742187505 0.045374013671875005 0.14530908789062502 +0.0127414306640625 0.041626462402343745 0.11550861474609377 0.8301237070312499 +0.0213551044921875 0.0150915625 0.954584759765625 0.008968583984375 +0.854439169921875 0.04406417919921875 0.03183672998046875 0.0696599560546875 +0.9007530078125 0.024096405761718752 0.06896810986328125 0.00618246044921875 +0.014454765625 0.9486958510742188 0.0131796103515625 0.02366965771484375 +0.05232893701171875 0.8708910981445313 0.0246287607421875 0.052151290527343755 +0.07370175341796875 0.7181848442382812 0.05417552099609375 0.1539378203125 +0.0347548935546875 0.00742521533203125 0.9483799897460938 0.0094399375 +0.00541487890625 0.0060731435546875 0.95573796875 0.0327740283203125 +0.0325585 0.07064050000000001 0.4010085 0.4957925 + +>tree0.2_42_AAGTCGGGTA +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.987 0.001 0.011 +0.002 0.001 0.996 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.996 0.002 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 + +>tree0.2_43_TAWCTTCAGATA +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.596 0.001 0.001 0.402 +0.001 0.997 0.001 0.001 +0.001 0.001 0.298 0.7 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.7 0.001 0.298 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 + +>tree0.2_44_TACSTCGGAT +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.499 0.499 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.092 0.001 0.906 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_45_TCCAWCTGAGRT +0.001 0.032 0.017 0.95 +0.003 0.974 0.001 0.022 +0.004 0.925 0.011 0.06 +0.976 0.004 0.007 0.013 +0.519 0.003 0.001 0.477 +0.004 0.901 0.021 0.074 +0.187 0.004 0.031 0.778 +0.099 0.001 0.866 0.034 +0.848 0.013 0.048 0.091 +0.001 0.113 0.869 0.017 +0.419 0.004 0.556 0.021 +0.001 0.153 0.003 0.843 + +>tree0.2_46_CTAGCAGAGGTT +0.009 0.972 0.001 0.018 +0.001 0.008 0.001 0.99 +0.986 0.006 0.001 0.007 +0.033 0.001 0.961 0.005 +0.017 0.765 0.001 0.217 +0.997 0.001 0.001 0.001 +0.007 0.022 0.96 0.011 +0.99 0.001 0.008 0.001 +0.052 0.001 0.923 0.024 +0.033 0.001 0.952 0.014 +0.001 0.016 0.006 0.977 +0.008 0.006 0.001 0.985 + +>tree0.2_47_GCAGTTYGATCT +0.001 0.165 0.833 0.001 +0.001 0.9745 0.001 0.0235 +0.7195 0.1085 0.171 0.001 +0.006 0.001 0.992 0.001 +0.1015 0.029 0.001 0.8685 +0.004999999999999999 0.211 0.001 0.7829999999999999 +0.001 0.61 0.001 0.388 +0.039 0.035500000000000004 0.9245 0.001 +0.9815 0.001 0.0165 0.001 +0.001 0.001 0.206 0.792 +0.2205 0.7775 0.001 0.001 +0.083 0.001 0.001 0.915 + +>tree0.2_48_MGCAGTCTGAGAT +0.5 0.359 0.001 0.141 +0.074 0.001 0.924 0.001 +0.001 0.99 0.001 0.008 +0.9965 0.001 0.0015 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.2475 0.746 0.0055 0.001 +0.001 0.0215 0.001 0.9765 +0.001 0.006500000000000001 0.7495 0.243 +0.997 0.001 0.001 0.001 +0.001 0.001 0.99 0.008 +0.75 0.0015 0.2475 0.001 +0.001 0.011 0.001 0.987 + +>tree0.2_49_TTCTCAGATAGC +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.822 0.176 0.001 +0.001 0.001 0.001 0.997 +0.176 0.822 0.001 0.001 +0.822 0.001 0.176 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.822 0.176 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_50_TGCTCWATCAAAAG +0.054793 0.201681875 0.056828125 0.686697 +0.0161864765625 0.0239326875 0.952412875 0.007467890625 +0.03124792578125 0.9501425078125 0.00514559375 0.01346397265625 +0.011057734375 0.00714910546875 0.044409578125 0.93738358203125 +0.0210333515625 0.69899646484375 0.27413748828125 0.005832808593750001 +0.5504291171875 0.0346529375 0.007108546875 0.40780938671875 +0.9198235234375 0.03454830078125 0.01153321875 0.034094828125000004 +0.01906946875 0.01202835546875 0.06631839843750001 0.90258376171875 +0.0106858203125 0.8378136054687501 0.1233601953125 0.028140375 +0.88008859375 0.066986765625 0.0222085703125 0.030716199218750004 +0.9584254375 0.007084687500000001 0.0082525625 0.026237125 +0.921765625 0.030640625 0.00809375 0.0395 +0.961734375 0.0210625 0.0136875 0.003515625 +0.020499999999999997 0.0225 0.94825 0.00875 + +>tree0.2_51_CAAGAATTGAGG +0.001 0.9705 0.0025 0.026 +0.9935 0.001 0.001 0.0045000000000000005 +0.993 0.001 0.001 0.005 +0.009999999999999998 0.001 0.968 0.021 +0.9885 0.001 0.0095 0.001 +0.8049999999999999 0.006 0.16999999999999998 0.019 +0.001 0.08249999999999999 0.001 0.9155 +0.001 0.005 0.005 0.989 +0.029 0.0115 0.948 0.0115 +0.948 0.001 0.049 0.002 +0.036000000000000004 0.0015 0.9525 0.01 +0.0175 0.0045000000000000005 0.966 0.012 + +>tree0.2_52_TCGTCCATTCTG +0.231 0.001 0.001 0.767 +0.001 0.81 0.001 0.188 +0.001 0.001 0.997 0.001 +0.001 0.115 0.001 0.883 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.231 0.001 0.231 0.537 +0.001 0.883 0.001 0.115 +0.001 0.001 0.001 0.997 +0.115 0.001 0.883 0.001 + +>tree0.2_53_AGTCCCYACTGGG +0.988 0.003 0.008 0.001 +0.011 0.003 0.985 0.001 +0.001 0.001 0.001 0.997 +0.004999999999999999 0.7015 0.001 0.2925 +0.0025 0.9685 0.001 0.028 +0.001 0.993 0.001 0.004999999999999999 +0.003 0.5305 0.001 0.4655 +0.9955 0.001 0.001 0.0025 +0.01 0.675 0.0185 0.2965 +0.0035 0.002 0.001 0.9935 +0.035 0.1795 0.687 0.0985 +0.006999999999999999 0.001 0.988 0.004 +0.001 0.001 0.997 0.001 + +>tree0.2_54_CCGGAGCCGCGA +0.249 0.749 0.001 0.001 +0.001 0.749 0.001 0.249 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.249 0.749 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.749 0.001 0.001 0.249 + +>tree0.2_55_GGGGTCCGCGGA +0.111 0.111 0.777 0.001 +0.001 0.001 0.997 0.001 +0.001 0.189 0.809 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.243 0.755 +0.001 0.997 0.001 0.001 +0.001 0.813 0.001 0.185 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.87 0.001 0.128 0.001 + +>tree0.2_56_GCSGCSSCGGCGC +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.5645 0.4335 0.001 +0.001 0.001 0.997 0.001 +0.001 0.91925 0.07875 0.001 +0.001 0.432 0.5660000000000001 0.001 +0.001 0.499 0.499 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.748 0.25 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_57_ACTGACCTGCGC +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.682 0.001 0.316 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.015 0.001 0.983 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_58_GGCGCAGGCAGC +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.052 0.946 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.977 0.001 0.021 + +>tree0.2_59_YCCGCCGGCAGS +0.001 0.419 0.243 0.338 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.243 0.364 0.393 0.001 + +>tree0.2_60_GCASGYAGGCAG +0.001 0.001 0.997 0.001 +0.001 0.865 0.001 0.133 +0.997 0.001 0.001 0.001 +0.001 0.392 0.606 0.001 +0.001 0.001 0.744 0.254 +0.001 0.602 0.001 0.396 +0.826 0.001 0.001 0.172 +0.001 0.197 0.801 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_61_GTCGCTCACGCT +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.996 0.002 0.001 +0.997 0.001 0.001 0.001 +0.023 0.975 0.001 0.001 +0.001 0.002 0.996 0.001 +0.003 0.988 0.008 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_62_GCGYGCCCACGC +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.429 0.001 0.569 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.76 0.001 0.238 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_63_GCGTRGKCA +0.073809 0 0.926191 0 +0 1 0 0 +0.024675 0 0.975325 0 +0 0 0 1 +0.602682 0.035568 0.325135 0.036614 +0.013301 0.24276 0.702483 0.041456 +0.003544 0 0.664046 0.33241 +0.053727 0.882254 0.051563 0.012456 +0.887067 0.031442 0.02916 0.052331 + +>tree0.2_64_CGCGCRNGCK +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.01550875 0.97345775 0.0045555000000000005 0.0064781249999999995 +0.008587000000000001 0.008655375000000002 0.9696825 0.013075125 +0.000875 0.96171325 0.007286500000000001 0.03012525 +0.40046775 0.01425 0.56328225 0.022 +0.004527375 0.24957875 0.342375 0.403518875 +0.17451012500000002 0.0029095 0.80175925 0.020821125000000003 +0.155875 0.7791941250000001 0.02125 0.043680875 +0.002624625 0.021394625 0.539048625 0.436932125 + +>tree0.2_65_CGCGCGCGCGCART +0.0325 0.846 0.012 0.1095 +0.0115 0.014 0.9735 0.001 +0.01275 0.947 0.022625 0.017625000000000002 +0.02375 0.024875 0.9425 0.008875000000000001 +0.02775 0.92225 0.017625000000000002 0.032375 +0.056875 0.011125 0.920875 0.011125 +0.091 0.7986249999999999 0.02475 0.085625 +0.143125 0.0285 0.8042499999999999 0.024125 +0.01275 0.962125 0.014 0.011125 +0.205875 0.010375 0.770375 0.013375 +0.00775 0.961375 0.023375 0.0075 +0.8256249999999999 0.03125 0.096625 0.0465 +0.30774999999999997 0.051 0.47475 0.1665 +0.088 0.107 0.076 0.729 + +>tree0.2_66_TCRGCGYYCTCKC +0.054343 0 0 0.945657 +0.011947 0.9634195 0.0243835 0.00025 +0.49854225 0.03901 0.2999375 0.1625105 +0.00878875 0.03370675 0.9499345 0.00757 +0.029221250000000004 0.93328375 0.020283250000000003 0.017211749999999998 +0.00541525 0.007713 0.9688185 0.01805325 +0.14762324999999998 0.5419160000000001 0.01018775 0.30027349999999997 +0.06898475 0.44768625 0.026784999999999996 0.456544 +0.002979 0.953332 0.0112825 0.032407 +0.07476050000000001 0.0143825 0.1438895 0.7669675 +0.0101095 0.97407875 0.00671 0.0091015 +0.005785 0.0355925 0.6235855 0.3350365 +0.001 0.967 0.031 0.001 + +>tree0.2_67_CGGWCGCTAG +0.0595 0.89325 0.04625 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.465 0.2415 0.001 0.2925 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_68_CKGATTGCTAGC +0.001 0.997 0.001 0.001 +0.001 0.001 0.4815 0.5165000000000001 +0.0415 0.001 0.9565 0.001 +0.7849999999999999 0.001 0.134 0.08 +0.208 0.001 0.001 0.79 +0.102 0.1955 0.001 0.7015 +0.042 0.001 0.956 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.1535 0.8445 +0.979 0.001 0.001 0.019 +0.001 0.082 0.916 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_69_CGCTCGCTCKCT +0.001 0.997 0.001 0.001 +0.259 0.001 0.739 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.413 0.585 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_70_CTCTCACTAT +0.001 0.997 0.001 0.001 +0.0038655 0.0034775 0.004043 0.988614 +0.0028035 0.995039 0.0016575 0.0005 +0.026982 0.0040745 0.003765 0.9651785 +0.0075 0.9915 0.0005 0.0005 +0.653099 0.0464295 0.2066375 0.093834 +0.0005 0.7215104999999999 0.237442 0.0405475 +0.0005 0.0475395 0.0009525 0.951008 +0.9512775 0.010034 0.0241625 0.014526 +0.0005 0.0195305 0.0005 0.9794695 + +>tree0.2_71_CCGCCAGAGAAC +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.004 0.994 0.001 0.001 +0.021 0.977 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.994 0.004 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.994 0.001 0.001 0.004 +0.001 0.994 0.001 0.004 + +>tree0.2_72_CCACYAGRKGGCG +0.051 0.9065 0.001 0.0415 +0.00125 0.9823125 0.01375 0.0026875 +0.6959375 0.0258125 0.234125 0.044125 +0.024 0.765375 0.1949375 0.0156875 +0.1145 0.3325625 0.060187500000000005 0.493 +0.9364375 0.0025625 0.01275 0.04825 +0.001375 0.001 0.996625 0.001 +0.4814375000000001 0.0022500000000000003 0.5150625 0.00125 +0.004375 0.0022500000000000003 0.458 0.5353749999999999 +0.0028750000000000004 0.00125 0.994875 0.001 +0.002 0.0021875 0.9508125 0.045 +0.061437500000000006 0.8634999999999999 0.004750000000000001 0.0703125 +0.196125 0.006125 0.777875 0.019875 + +>tree0.2_73_CGGCTCCGGGRR +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.206 0.01 0.598 0.186 +0.009 0.989 0.001 0.001 +0.001 0.001 0.001 0.997 +0.2 0.798 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.39 0.001 0.608 0.001 +0.594 0.01 0.366 0.03 + +>tree0.2_74_GTCAAAGGGGGG +0.001 0.048 0.95 0.001 +0.001 0.001 0.001 0.997 +0.022 0.976 0.001 0.001 +0.9 0.054 0.004 0.042 +0.735 0.262 0.001 0.002 +0.997 0.001 0.001 0.001 +0.017 0.004 0.978 0.001 +0.001 0.001 0.997 0.001 +0.001 0.14 0.858 0.001 +0.001 0.131 0.834 0.034 +0.207 0.028 0.698 0.067 +0.001 0.001 0.674 0.324 + +>tree0.2_75_TGCACTGCCCTA +0.044 0.222 0.001 0.733 +0.236 0.001 0.76 0.003 +0.0015 0.855 0.0305 0.113 +0.995 0.001 0.003 0.001 +0.004 0.8095 0.004 0.1825 +0.001 0.001 0.0045000000000000005 0.9935 +0.073 0.025 0.8785000000000001 0.0235 +0.001 0.9965 0.0015 0.001 +0.001 0.952 0.0015 0.0455 +0.004 0.9395 0.0075 0.049 +0.002 0.023 0.004 0.971 +0.9955 0.001 0.0015 0.002 + +>tree0.2_76_TAGTGTAGWGTAG +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.001 0.231 0.767 0.001 +0.1405 0.065 0.001 0.7935 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.995 0.003 0.001 0.001 +0.001 0.001 0.997 0.001 +0.499 0.003 0.001 0.497 +0.001 0.001 0.9335 0.0645 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.001 0.005 0.993 0.001 + +>tree0.2_77_GTAKKGTRTWGTA +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.9765 0.001 0.0205 0.002 +0.093 0.058 0.33799999999999997 0.511 +0.16 0.001 0.495 0.34450000000000003 +0.001 0.001 0.997 0.001 +0.006 0.0215 0.1485 0.8240000000000001 +0.4865 0.001 0.4935000000000001 0.019 +0.001 0.001 0.001 0.997 +0.489 0.0715 0.078 0.3615 +0.006999999999999999 0.0745 0.9175 0.001 +0.0465 0.0465 0.001 0.906 +0.906 0.001 0.092 0.001 + +>tree0.2_78_CTTCACATAAAA +0.001 0.997 0.001 0.001 +0.001 0.001 0.012 0.986 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.967 0.001 0.031 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_79_CATCAGTTAAG +0.001 0.98 0.001 0.018000000000000002 +0.8313474999999999 0.0798305 0.00732 0.081502 +0.046374 0.0042295 0.091922 0.8574744999999999 +0.012762 0.9725225 0.014215 0.0005 +0.8810294999999999 0.008553999999999999 0.0141055 0.0963115 +0.018 0.118519 0.8476969999999999 0.015784 +0.0005 0.0005 0.0099605 0.9890395 +0.056588 0.0080535 0.0413265 0.8940319999999999 +0.9687385 0.006838 0.0005 0.0239235 +0.9426915 0.046787 0.004291 0.006231 +0.1768855 0.09575 0.6825835 0.044781 + +>tree0.2_80_TTCGGGGTTGTT +0.001 0.001 0.006 0.992 +0.001 0.006 0.001 0.992 +0.006 0.992 0.001 0.001 +0.001 0.017 0.981 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.031 0.007 0.955 0.007 +0.001 0.007 0.007 0.985 +0.001 0.001 0.001 0.997 +0.006 0.001 0.992 0.001 +0.001 0.001 0.001 0.997 +0.007 0.007 0.001 0.985 + +>tree0.2_81_TCTTMYGTGTMGC +0.001 0.227 0.001 0.771 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.386 0.612 0.001 0.001 +0.001 0.3425 0.001 0.6555 +0.001 0.001 0.997 0.001 +0.001 0.259 0.001 0.739 +0.114 0.014 0.871 0.001 +0.001 0.001 0.001 0.997 +0.661 0.337 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.701 0.001 0.297 + +>tree0.2_82_GCTWCTGYCTAGTN +0.033 0.007 0.877 0.083 +0.041 0.845 0.007 0.107 +0.002432 0.08513325 0.0103055 0.90212925 +0.3483324375 0.0105964375 0.08791125 0.5531595625 +0.0296039375 0.9292164375 0.029944125 0.0112358125 +0.0204789375 0.0783535625 0.0071579375 0.8940095 +0.024829875 0.034119 0.7484081874999999 0.1926429375 +0.0485171875 0.401399875 0.01538125 0.5347016875 +0.124061 0.7728743124999999 0.0613434375 0.0417214375 +0.0230196875 0.0741160625 0.01253125 0.8903330625 +0.8638429999999999 0.0233775 0.080101625 0.032678 +0.0151143125 0.056411625 0.877747625 0.0507264375 +0.090642125 0.0578881875 0.1917496875 0.6597200000000001 +0.19452575 0.1665255 0.1460405 0.492909 + +>tree0.2_83_TCTTTCTAGTTT +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.2125 0.001 0.7855 +0.001 0.001 0.001 0.997 +0.001 0.001 0.1285 0.8694999999999999 +0.001 0.997 0.001 0.001 +0.001 0.001 0.233 0.765 +0.735 0.263 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 + +>tree0.2_84_CTCNRCCWAGATT +0.015 0.847 0.011 0.127 +0.02125 0.0125 0.03375 0.9325 +0.021699999999999997 0.931286 0.026032 0.020982 +0.368815 0.336275 0.011425 0.28336 +0.5365555 0.057238 0.30143 0.1050265 +0.016402 0.8739975 0.021051000000000004 0.088549 +0.0609235 0.882706 0.0135075 0.042863 +0.3099705 0.1365655 0.0025575000000000003 0.550906 +0.8260624999999999 0.06845799999999999 0.092443 0.0130365 +0.0314095 0.005 0.948346 0.0152445 +0.749652 0.024436 0.0563415 0.169945 +0.1970255 0.08515700000000001 0.0117865 0.7060310000000001 +0.2276355 0.061068 0.1153975 0.595899 + +>tree0.2_85_CGAATSCGAA +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.443 0.555 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_86_CGGKTCCGAA +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.583 0.415 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_87_CGGTAACG +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.885 0.113 +0.071 0.001 0.001 0.927 +0.8109999999999999 0.001 0.001 0.187 +0.833 0.165 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_88_TTTMGGWCRGGT +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.568 0.43 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.497 0.001 0.001 0.501 +0.001 0.997 0.001 0.001 +0.447 0.093 0.459 0.001 +0.001 0.093 0.905 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_89_TMCCGTTTMCAA +0.001 0.001 0.001 0.997 +0.655 0.343 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.157 0.001 0.001 0.841 +0.001 0.001 0.001 0.997 +0.563 0.412 0.024 0.001 +0.001 0.841 0.157 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_90_WCCGGTTCGA +0.473 0.18 0.0255 0.3215 +0.001 0.997 0.001 0.001 +0.001 0.9605 0.036750000000000005 0.00175 +0.001 0.001 0.997 0.001 +0.307125 0.001 0.690875 0.001 +0.2325 0.01575 0.001 0.75075 +0.0165 0.126 0.001 0.8565 +0.025625 0.81525 0.00825 0.151 +0.001 0.001 0.8835 0.1145 +0.997 0.001 0.001 0.001 + +>tree0.2_91_AGTMAACG +0.97073 0.02827 0.0005 0.0005 +0.061381 0.0803985 0.8577205 0.0005 +0.015803499999999998 0.009549 0.0229575 0.95169 +0.5550335 0.407 0.0005 0.0374665 +0.7149065 0.0197515 0.035458 0.2298845 +0.7998385 0.0021615 0.1975 0.0005 +0.0035 0.939109 0.0005 0.056891 +0.0317085 0.0005 0.9672915 0.0005 + +>tree0.2_92_CCSTTTCTTYGA +0.001 0.8395 0.001 0.1585 +0.001 0.987 0.011 0.001 +0.089 0.3365 0.5705 0.004 +0.0015 0.012 0.0115 0.975 +0.001 0.0115 0.0015 0.986 +0.089 0.057 0.031 0.823 +0.001 0.991 0.006999999999999999 0.001 +0.012 0.031 0.1545 0.8025 +0.001 0.003 0.0015 0.9945 +0.001 0.385 0.001 0.613 +0.1215 0.001 0.8745 0.003 +0.9955 0.001 0.0025 0.001 + +>tree0.2_93_NCGTTWCGY +0.279875 0.31024999999999997 0.2078125 0.2020625 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.132 0.001 0.128 0.739 +0.013125 0.001 0.001 0.984875 +0.41675 0.001 0.001 0.58125 +0.001 0.604 0.191 0.204 +0.001 0.262 0.736 0.001 +0.135 0.28625 0.07525 0.5035000000000001 + +>tree0.2_94_GTCATAAAGACS +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.719 0.001 0.279 0.001 +0.001 0.241 0.001 0.757 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.311 0.687 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.602 0.396 0.001 + +>tree0.2_95_TTTCTTTGACTC +0.001 0.001 0.001 0.997 +0.006 0.001 0.001 0.992 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 + +>tree0.2_96_AGTCAAGAAT +0.985 0.005 0.009 0.001 +0.0415295 0.06518600000000001 0.887309 0.005974999999999999 +0.0135 0.053688 0.020397 0.912415 +0.066616 0.9098355 0.019048 0.0045 +0.9817 0.0139675 0.003832 0.0005 +0.8863805 0.007799 0.102325 0.0034955000000000003 +0.059102 0.005 0.9196425 0.0162555 +0.9880385 0.0005 0.0089615 0.0025 +0.9985 0.0005 0.0005 0.0005 +0.0005 0.133546 0.0005 0.865454 + +>tree0.2_97_GWNAAAAATT +0.001 0.001 0.997 0.001 +0.42328925 0.1878095 0.0002003125 0.3887009375 +0.48377403125 0.2488640625 0.023193625 0.24416825000000003 +0.9275635625 0.05295528125 0.003147 0.01633415625 +0.9912483125 0.0012420625 0.00587225 0.00163728125 +0.99266446875 0.0003545 0.0059355 0.0010454375 +0.91378859375 0.07703071875 0.00219371875 0.00698646875 +0.9061581875 0.00557259375 0.06186328125 0.026406375000000003 +0.017452375 0.0513779375 0.08780421875 0.84336603125 +0.004172625 0.01845390625 0.012675937499999998 0.9646975 + +>tree0.2_98_RCTCAACA +0.555812 0.098341 0.345848 0 +0 1 0 0 +0 0.178504 0.000662 0.820834 +0 0.982886 0 0.017114 +0.981012 0.014132 0.001639 0.003217 +0.98898 0.005357 0.005663 0 +0.006246 0.720583 0.104161 0.169009 +0.760796 0 0.239204 0 + +>tree0.2_99_CTMCTCAAGY +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.474 0.524 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.512 0.001 0.486 + +>tree0.2_100_TAATTTTGT +0 0 0.131579 0.868421 +1 0 0 0 +0.794312 0.070342 0.070713 0.064634 +0.040697 0.006908 0 0.952395 +0.089812 0 0.004193 0.905995 +0 0.233466 0 0.766534 +0.008879 0.00288 0 0.988241 +0 0 1 0 +0.005415 0 0 0.994585 + +>tree0.2_101_ACTTCTTTTGYG +0.9005000000000001 0.0975 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.1325 0.8654999999999999 +0.001 0.001 0.001 0.997 +0.001 0.9005000000000001 0.0975 0.001 +0.001 0.001 0.1945 0.8035 +0.001 0.001 0.0975 0.9005000000000001 +0.001 0.001 0.001 0.997 +0.001 0.035500000000000004 0.001 0.9625 +0.001 0.001 0.997 0.001 +0.001 0.3885 0.001 0.6095 +0.001 0.013 0.985 0.001 + +>tree0.2_102_SKCTWTTSTGA +0.0039005 0.55387325 0.351642 0.09058425 +0.01730690625 0.10007734375 0.3206570625 0.56195828125 +0.05136012499999999 0.834478375 0.06979993749999999 0.0443615625 +0.014791125 0.048085 0.02273240625 0.9143915 +0.6039386250000001 0.04657574999999999 0.04225728125 0.30722868750000004 +0.00758125 0.03765065625 0.012607875 0.9421605 +0.091266375 0.05286925 0.04220303125 0.813661125 +0.0451705 0.4770715625000001 0.442910375 0.034847625 +0.15667796875 0.0092085 0.05118384375 0.7829296874999999 +0.1221156875 0.016805374999999997 0.8052293125000001 0.0558495625 +0.9168018125 0.0098175 0.0164046875 0.0569760625 + +>tree0.2_103_GCTYTTGT +0.1105515 0.0375 0.8514485 0.0005 +0.0005 0.990713 0.0005 0.008287 +0.019092 0.0535 0.10875 0.818658 +0.1815 0.5005 0.0005 0.3175 +0.0005 0.0156935 0.0612275 0.9225785 +0.0115975 0.0026155 0.003863 0.981924 +0.0005 0.005009 0.9639285 0.0305625 +0.0005 0.039036 0.0005 0.959964 + +>tree0.2_104_RGCTAYAGT +0.5915255 0.0004035 0.338858 0.069213 +0.010492 0.0435225 0.9284255 0.01756 +0.018557 0.923037 0.036443 0.021963 +0 0.0196735 0.000315 0.980011 +0.88615 0.026002 0.0874515 0.0003965 +0.0167605 0.4450885 0.026613 0.511537 +0.84482 0.0214345 0.009938 0.123807 +0.108763 0.19838 0.6778495 0.0150075 +0.032012 0.0531045 0.0179165 0.8969670000000001 + +>tree0.2_105_AATCACCCGT +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.989 0.003 0.006999999999999999 +0.001 0.971 0.001 0.027 +0.001 0.8995 0.002 0.0975 +0.2125 0.001 0.7855 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_106_AATAACKTG +0.93895 0.014267 0.044096 0.002687 +0.969249 0.011572 0.019179 0 +0.002506 0.02804 0.025867 0.943586 +0.965695 0 0.001931 0.032374 +0.920003 0.04273 0.037267 0 +0.03688 0.887805 0.029144 0.046171 +0.107087 0.042817 0.45257 0.397526 +0.006558 0.196479 0 0.796963 +0.023901 0.050357 0.925742 0 + +>tree0.2_107_TAACGCGA +0.013 0.037 0.019 0.931 +0.997 0.001 0.001 0.001 +0.931 0.067 0.001 0.001 +0.001 0.881 0.117 0.001 +0.045 0.042 0.824 0.089 +0.059 0.877 0.063 0.001 +0.127 0.113 0.739 0.021 +0.864 0.001 0.039 0.096 + +>tree0.2_108_AAYARCAA +0.86980575 0.12728275 0.00162725 0.0012845 +0.96240725 0.000085 0.03750775 0 +0.07481475 0.371524 0.0496095 0.5040512500000001 +0.945199 0.01163775 0.039317 0.00384575 +0.35936524999999997 0.00258625 0.634744 0.0033045 +0.05396925 0.8180425 0.02525625 0.1027315 +0.89739325 0.0225315 0.033517000000000005 0.0465585 +0.8340942499999999 0.02645475 0.11771275 0.021738 + +>tree0.2_109_ARGAGCGA +0.8616682499999999 0.0975535 0 0.04077825 +0.58104375 0.0199045 0.397218 0.001834 +0.00082775 0.19820125 0.7983960000000001 0.0025752500000000003 +0.977992 0.0000685 0 0.0219395 +0.02703675 0.04873 0.92423325 0 +0.00089225 0.860114 0.024001 0.114993 +0.0758505 0.02160275 0.90254675 0 +0.85200125 0.0005605 0.0205715 0.12686675 + +>tree0.2_110_MAGCTA +0.428174 0.398128 0.173698 0 +0.864627 0.016179 0.119194 0 +0 0 1 0 +0 1 0 0 +0 0.011311 0.002661 0.986028 +0.898528 0 0.101472 0 + +>tree0.2_111_TAGCGCMG +0.001 0.001 0.001 0.997 +0.9985 0.0005 0.0005 0.0005 +0.010226 0.215756 0.694152 0.079866 +0.0307385 0.934458 0.0343035 0.0005 +0.01678 0.0089815 0.881243 0.0929955 +0.0005 0.985913 0.013087 0.0005 +0.360575 0.5669155 0.0476595 0.0248505 +0.0005 0.008533 0.9867255 0.0042415000000000005 + +>tree0.2_112_TCTACATTAC +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.673 0.001 0.325 0.001 +0.001 0.997 0.001 0.001 +0.719 0.001 0.279 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.955 0.001 0.001 0.043 +0.001 0.997 0.001 0.001 + +>tree0.2_113_MTACGCTACG +0.486493 0.281353 0.183443 0.048711 +0 0.00539 0.0884105 0.9061995 +0.7412745000000001 0.0137045 0.1260165 0.1190045 +0.088806 0.6897329999999999 0.1389145 0.082547 +0.244172 0 0.538231 0.217597 +0.0610905 0.921168 0.013267 0.0044745 +0.048466 0.0647575 0.0006655 0.886111 +0.9180975 0.043539 0.015498 0.022866 +0.0112535 0.976222 0.0125245 0 +0.012544 0.023997 0.963459 0 + +>tree0.2_114_AGCGTGCTTT +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.22 0.778 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 + +>tree0.2_115_CGKWCWNT +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.397 0.601 +0.398 0.065 0.043 0.494 +0.001 0.997 0.001 0.001 +0.343 0.127 0.001 0.529 +0.049 0.339 0.286 0.325 +0.001 0.001 0.245 0.753 + +>tree0.2_116_WAKGGCSG +0.48584 0.185912 0 0.328248 +0.872128 0 0.127872 0 +0 0 0.580534 0.419466 +0 0 1 0 +0 0 1 0 +0.153728 0.846272 0 0 +0.002059 0.437504 0.556525 0.003911 +0.02235 0 0.965133 0.012517 + +>tree0.2_117_CCGMMATSTT +0.045 0.745 0.209 0.001 +0.001 0.742 0.256 0.001 +0.001 0.001 0.997 0.001 +0.554 0.368 0.006 0.072 +0.391 0.607 0.001 0.001 +0.592 0.239 0.001 0.168 +0.001 0.001 0.001 0.997 +0.145 0.561 0.293 0.001 +0.001 0.001 0.08 0.918 +0.001 0.001 0.001 0.997 + +>tree0.2_118_CTGCYTTAA +0.006049 0.93048 0.019947 0.043524 +0.026734 0 0.024257 0.94901 +0 0.015227 0.902946 0.081827 +0.00417 0.929695 0 0.066135 +0.004613 0.424096 0.005043 0.566248 +0 0.030682 0.007716 0.961602 +0.030831 0 0 0.969169 +0.771542 0 0.126152 0.102306 +0.945336 0.004812 0.006237 0.043614 + +>tree0.2_119_CYTGACTTC +0.0058355 0.9199675 0.051399 0.0227975 +0.030317 0.53678275 0.121395 0.31150475 +0.01831575 0.047570999999999995 0.013099 0.92101425 +0.0241195 0.04646975 0.914876 0.01453475 +0.7069602500000001 0.16565724999999998 0.03220475 0.0951775 +0.09183525 0.768484 0.0176435 0.12203725 +0.005067749999999999 0.01751975 0.012803250000000002 0.96460925 +0.0030402500000000004 0.01057275 0.0300475 0.9563395 +0.00636725 0.9195495 0.02030725 0.053776 + +>tree0.2_120_TYCGAACG +0.001 0.001 0.001 0.997 +0.001 0.473 0.001 0.525 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_121_TCCGTTCGAT +0.001 0.001 0.0385 0.9595 +0.001 0.9095 0.0385 0.051 +0.001 0.9595 0.0385 0.001 +0.0665 0.001 0.8812500000000001 0.05125 +0.001 0.001 0.236 0.762 +0.0385 0.001 0.001 0.9595 +0.001 0.9405 0.001 0.0575 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.076 0.922 + +>tree0.2_122_CGAACGAAT +0.001 0.997 0.001 0.001 +0.051 0.0535 0.8945000000000001 0.001 +0.744 0.048 0.192 0.016 +0.7883125 0.1948125 0.0015 0.015375000000000002 +0.001 0.9935 0.001 0.0045000000000000005 +0.001 0.001 0.997 0.001 +0.863625 0.0205 0.093375 0.0225 +0.8765000000000001 0.001 0.0675 0.055 +0.001 0.001 0.096 0.902 + +>tree0.2_123_MGAYCSYRTC +0.431 0.567 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.62 0.001 0.378 +0.001 0.997 0.001 0.001 +0.001 0.394 0.501 0.104 +0.001 0.526 0.001 0.472 +0.544 0.001 0.454 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 + +>tree0.2_124_ATAKTTKGA +0.8572850000000001 0.027758 0.0942675 0.0206895 +0.0225265 0.108539 0.0027897499999999997 0.86614475 +0.9057215 0.02256275 0.0420495 0.029666 +0.126698 0.00025 0.506206 0.36684575 +0.028309 0.03728625 0.05305024999999999 0.8813547500000001 +0.1390055 0.00241275 0.012083 0.8464985 +0.00025 0.009321 0.3354165 0.65501225 +0.00728575 0.05217525 0.92495325 0.01558575 +0.83873875 0.0742235 0.06214075 0.024897 + +>tree0.2_125_TCCACCTAG +0.09659 0 0.068517 0.834894 +0 0.997119 0.002881 0 +0.037892 0.907276 0.037703 0.01713 +0.996979 0 0.003021 0 +0 0.993168 0 0.006832 +0.139939 0.84749 0 0.012571 +0.100645 0 0.014253 0.885102 +0.94254 0.042654 0 0.014807 +0 0.278035 0.681611 0.040354 + +>tree0.2_126_CGATGTTCGG +0.001 0.997 0.001 0.001 +0.001 0.001 0.9905 0.0075 +0.978 0.001 0.001 0.02 +0.001 0.001 0.001 0.997 +0.0075 0.001 0.9905 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_127_GATGTATGGAA +0.001 0.001 0.997 0.001 +0.927104125 0.005043437499999999 0.0147083125 0.053144125 +0.00559971875 0.01066678125 0.04618528125 0.93754825 +0.06667603125 0.017782625000000003 0.890006625 0.02553484375 +0.05293640625 0.03885365625 0.01016615625 0.89804371875 +0.91754071875 0.02330028125 0.056559124999999995 0.00260003125 +0.0505580625 0.0351849375 0.0062218125 0.90803521875 +0.07029250000000001 0.005324437499999999 0.917808 0.00657503125 +0.06620965625 0.035628218749999996 0.8899809999999999 0.008181062499999999 +0.93577984375 0.005033875 0.03811421875 0.02107190625 +0.9467165 0.009192 0.0105365 0.033555 + +>tree0.2_128_AGTYTCAG +1 0 0 0 +0 0.007818 0.992182 0 +0.01166 0.007836 0.005359 0.975145 +0.037016 0.443475 0 0.519508 +0.00914 0.006177 0 0.984683 +0 0.866175 0.089683 0.044142 +0.893402 0 0.075953 0.030645 +0 0.014995 0.75802 0.226985 + +>tree0.2_129_RAGTATCA +0.463 0.001 0.535 0.001 +0.928 0.07 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.12 0.878 +0.997 0.001 0.001 0.001 +0.001 0.254 0.107 0.638 +0.001 0.765 0.001 0.233 +0.997 0.001 0.001 0.001 + +>tree0.2_130_GTGGAAGCATCA +0.001 0.001 0.997 0.001 +0.001 0.019 0.001 0.979 +0.019 0.001 0.979 0.001 +0.001 0.001 0.997 0.001 +0.979 0.001 0.001 0.019 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.979 0.001 0.019 0.001 + +>tree0.2_131_GAGGCATCA +0.006435 0.003081 0.93961 0.050874 +0.984946 0.000249 0 0.014805 +0.143856 0.059851 0.780523 0.01577 +0.199494 0.022348 0.778159 0 +0.197277 0.745726 0.011138 0.045859 +0.780879 0.212028 0.007092 0 +0.001769 0.013379 0 0.984852 +0 0.94086 0.012564 0.046575 +0.90985 0.042156 0.017518 0.030477 + +>tree0.2_132_GTGTCCCCAC +0.001 0.001 0.997 0.001 +0.256 0.001 0.001 0.742 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.963 0.003 0.033 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_133_TAATYCCCA +0 0.049927 0.187426 0.762648 +0.9436 0.046565 0 0.009835 +0.925128 0.005687 0.069185 0 +0 0.036097 0 0.963903 +0.094807 0.492685 0.026023 0.386485 +0.242869 0.614529 0.105534 0.037068 +0 0.991785 0 0.008215 +0 1 0 0 +0.979258 0 0.003937 0.016805 + +>tree0.2_134_TAGGGAGYGCMT +0.001 0.001 0.001 0.997 +0.831 0.001 0.001 0.167 +0.003 0.07 0.926 0.001 +0.001 0.069 0.929 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.995 0.003 +0.001 0.375 0.001 0.623 +0.001 0.001 0.951 0.047 +0.001 0.997 0.001 0.001 +0.389 0.573 0.035 0.003 +0.227 0.001 0.001 0.771 + +>tree0.2_135_TGCAAGCCCMA +0.0965 0.001 0.049 0.8534999999999999 +0.057132109375 0.024070421875 0.8540259374999999 0.064787140625 +0.0930674375 0.699288609375 0.171003671875 0.036640484375 +0.917352625 0.01329828125 0.047717375 0.02163171875 +0.7171566875 0.026889390625 0.071536828125 0.184417203125 +0.0169716875 0.019028984375 0.6815028125 0.282496515625 +0.00997071875 0.79943134375 0.004609375000000001 0.1859881875 +0.002979171875 0.6803735625 0.005083015624999999 0.31156428125 +0.0186815 0.794807625 0.08207215625 0.10443875 +0.409571109375 0.5196821406250001 0.043767296875 0.02697953125 +0.6936329999999999 0.2148125 0.0388005 0.052754 + +>tree0.2_136_GCARTCCTC +0.052044 0.219663 0.662893 0.065401 +0 0.980668 0.019332 0 +0.934393 0.035524 0.027533 0.00255 +0.397961 0.016636 0.585403 0 +0 0 0.20489 0.79511 +0 0.815446 0.005708 0.178846 +0.029374 0.961789 0.008837 0 +0 0 0.004933 0.995067 +0 0.932849 0.026218 0.040933 + +>tree0.2_137_GGTCTCTTCACR +0.001 0.001 0.997 0.001 +0.001 0.001 0.78 0.218 +0.001 0.001 0.001 0.997 +0.218 0.78 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.218 0.78 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.688 0.001 0.31 0.001 +0.001 0.997 0.001 0.001 +0.345 0.001 0.653 0.001 + +>tree0.2_138_GYGAGACGAAT +0.001 0.001 0.997 0.001 +0.001 0.6545000000000001 0.001 0.3435 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.974 0.001 0.001 0.024 +0.001 0.819 0.001 0.179 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_139_CATTCAWCTCRCAG +0.08240375 0.62076725 0.14756275000000002 0.14926625000000002 +0.567759 0.140913 0.21886025 0.07246775 +0.0451106640625 0.055675591796875 0.09721227734375 0.8020014628906249 +0.07574109309387207 0.02237933497619629 0.012603705993652344 0.8892758533477783 +0.03215481779479981 0.8357458005065919 0.02144146859741211 0.11065784965515138 +0.8187513369293213 0.022919854919433595 0.03123727471923828 0.12708371726989745 +0.5177580508728027 0.05188085076904298 0.11504612879943849 0.315314923248291 +0.028932131256103517 0.9284144695892332 0.021831853820800783 0.02082144450378418 +0.030849581130981445 0.07978152842712402 0.007569533981323241 0.8817993156280517 +0.00864878761291504 0.9482695859222412 0.028326209075927734 0.014755400833129885 +0.4197906149597168 0.04076178169250488 0.46574416955566406 0.07370344593811035 +0.12676452227783205 0.7842025739440919 0.06928642387390135 0.019746477996826176 +0.77750815625 0.049559640625 0.051201406250000005 0.121730796875 +0.08069984375 0.0145745 0.89391203125 0.010813625 + +>tree0.2_140_TYGTTNGGAANG +0.001 0.065 0.196 0.738 +0.001 0.654 0.001 0.344 +0.001 0.001 0.997 0.001 +0.13 0.001 0.001 0.868 +0.001 0.001 0.001 0.997 +0.279 0.327 0.001 0.393 +0.001 0.064 0.934 0.001 +0.001 0.001 0.997 0.001 +0.934 0.001 0.001 0.064 +0.997 0.001 0.001 0.001 +0.279 0.458 0.262 0.001 +0.001 0.064 0.934 0.001 + +>tree0.2_141_TTTTCCAGGTGC +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.00125 0.99675 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.70025 0.106 0.19275 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.2325 0.001 0.7655000000000001 +0.09075 0.001 0.90725 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_142_CGACGSGAAA +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.63375 0.2635 0.10175 0.001 +0.001 0.997 0.001 0.001 +0.001 0.006875000000000001 0.991125 0.001 +0.001 0.499 0.499 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_143_AGACTAGAAAYG +0.825 0.173 0.001 0.001 +0.001 0.001 0.997 0.001 +0.799 0.199 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.173 0.825 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.452 0.001 0.546 +0.001 0.001 0.997 0.001 + +>tree0.2_144_MCGCGAAACG +0.475 0.523 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_145_NTTCCTGCGCGS +0.178 0.076 0.35 0.396 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.075 0.506 0.289 0.13 + +>tree0.2_146_CTNTWYTCGCGCG +0.194 0.598 0.207 0.001 +0.1335 0.1365 0.12625 0.60375 +0.1915 0.12125 0.204 0.48325 +0.03075 0.0289375 0.001 0.9393125 +0.335125 0.001 0.001 0.662875 +0.009000000000000001 0.499 0.001 0.491 +0.0213125 0.04421875 0.03346875 0.901 +0.3015 0.6965 0.001 0.001 +0.001 0.2776875 0.7178125 0.0035 +0.001 0.997 0.001 0.001 +0.001 0.2105 0.776125 0.012375 +0.027625 0.970375 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_147_GCTGGGTAAAAT +0.001 0.001 0.933 0.065 +0.001 0.997 0.001 0.001 +0.001 0.001 0.016 0.982 +0.049 0.001 0.949 0.001 +0.001 0.016 0.982 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.963 0.001 0.035 0.001 +0.997 0.001 0.001 0.001 +0.001 0.057 0.001 0.941 + +>tree0.2_148_RCAAGRTAMA +0.5455484375 0.1129561875 0.3160478125 0.0254478125 +0.0383500625 0.8435418125 0.0758816875 0.0422265 +0.7108174375 0.014504312500000002 0.10375725 0.1709215625 +0.595536 0.0817594375 0.26931625 0.0533881875 +0.11788875 0.06145199999999999 0.7926736875 0.027985375 +0.4413119375 0.0074206875 0.531749375 0.019517874999999997 +0.040414124999999995 0.1311770625 0.042202875 0.786205875 +0.9244441875 0.030191375000000003 0.04236125 0.0030038125 +0.470696 0.34376256250000004 0.01593275 0.169608875 +0.898664 0.016456625 0.002091625 0.08278775 + +>tree0.2_149_GCGAKARA +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.58 0.418 +0.716 0.001 0.282 0.001 +0.547 0.163 0.288 0.002 +0.997 0.001 0.001 0.001 + +>tree0.2_150_CGAGTAAA +0.102 0.73 0.039 0.129 +0.073 0.001 0.925 0.001 +0.826 0.001 0.03 0.143 +0.001 0.017 0.926 0.056 +0.072 0.001 0.093 0.834 +0.971 0.027 0.001 0.001 +0.929 0.015 0.014 0.042 +0.916 0.001 0.063 0.02 + +>tree0.2_151_GCGGGGAAAG +0.0225 0.0235 0.922 0.032 +0.0445 0.9115 0.043 0.001 +0.064 0.001 0.934 0.001 +0.2145 0.014 0.758 0.0135 +0.0405 0.013 0.9455 0.001 +0.001 0.004999999999999999 0.9845 0.0095 +0.9205 0.001 0.0645 0.014 +0.718 0.001 0.269 0.012 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_152_GGGGAGAGRAAA +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.473 0.001 0.525 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_153_TGGTGRAAAA +0.0444923125 0.02024575 0.017356125 0.9179056875 +0.07311626562500001 0.029078453125 0.893287140625 0.004518109375 +0.00629515625 0.04745740625 0.928268796875 0.017978640625 +0.23996803125 0.01672440625 0.178641078125 0.5646665 +0.045582484375 0.001812734375 0.941768875 0.010835390625 +0.429535734375 0.011530890625 0.55214478125 0.006788187500000001 +0.92693815625 0.044940953124999995 0.017874234375 0.010246734375 +0.8501631249999999 0.019158234375 0.035313234375 0.095365390625 +0.871970984375 0.071864921875 0.0318715625 0.024293109375 +0.67014859375 0.115758375 0.100917375 0.11317559375 + +>tree0.2_154_RGGKGRAAAAAAA +0.478 0.119 0.402 0.001 +0.06762620336914063 0.0583055478515625 0.8559719089355469 0.01812758984375 +0.17593169848632811 0.03685825830078125 0.7730153518066406 0.014194708984375 +0.054150826583862305 0.017230855110168454 0.4762115253143311 0.45242240309906007 +0.09512381154632568 0.02696267778778076 0.8283482873535156 0.0495653754119873 +0.3618957597045898 0.02708082234954834 0.5798409215164184 0.031198096069335934 +0.6539354211807251 0.018049902145385745 0.31116561962127687 0.01688037786102295 +0.6876220660171509 0.024695768753051756 0.24572827739715575 0.04195387273406983 +0.8141613753356934 0.07066517373657226 0.08075138424682617 0.03442214691162109 +0.823826050163269 0.06925956320953369 0.08579852624511719 0.02111592106628418 +0.7982822294311523 0.043047775817871094 0.13020386149597166 0.028466051086425782 +0.7153462506713868 0.15967735833740235 0.10315218475341796 0.0218241708984375 +0.9043448503417968 0.02410214508056641 0.056677985290527345 0.014875131103515626 + +>tree0.2_155_AAACGACGCA +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.743 0.001 0.255 0.001 + +>tree0.2_156_TGAGCGACGCAG +0.001 0.001 0.001 0.997 +0.001 0.001 0.856 0.142 +0.897 0.101 0.001 0.001 +0.001 0.142 0.856 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.856 0.142 +0.997 0.001 0.001 0.001 +0.142 0.856 0.001 0.001 +0.003 0.001 0.853 0.143 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.142 0.856 0.001 + +>tree0.2_157_ATCACRAAGCGG +0.732 0.05 0.198 0.02 +0.033 0.033 0.001 0.933 +0.018 0.88 0.085 0.017 +0.707 0.004 0.288 0.001 +0.017 0.915 0.035 0.033 +0.484 0.002 0.498 0.017 +0.997 0.001 0.001 0.001 +0.837 0.05 0.05 0.063 +0.132 0.003 0.832 0.033 +0.047 0.917 0.035 0.001 +0.307 0.001 0.691 0.001 +0.001 0.018 0.98 0.001 + +>tree0.2_158_NNYGCRWAGCGN +0.244 0.256 0.198 0.302 +0.289 0.117 0.298 0.296 +0.001 0.393 0.001 0.605 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.434 0.001 0.564 0.001 +0.428 0.001 0.001 0.57 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.198 0.251 0.261 0.29 + +>tree0.2_159_AACCCTACAAAT +0.9864265 0.0012525 0.0039045 0.0084165 +0.9447585 0.0035555 0.051186 0.0005 +0.008549000000000001 0.849837 0.0996025 0.042012 +0.0101905 0.9494885 0.003678 0.0366425 +0.0005 0.866432 0.1206415 0.0124265 +0.0005 0.0005 0.0005 0.9985 +0.978437 0.0005 0.020563 0.0005 +0.0220365 0.952791 0.0013455 0.023827 +0.86825 0.002 0.12925 0.0005 +0.757316 0.006617 0.1900015 0.046065 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_160_CAGTATTAGGGT +0.001 0.967 0.001 0.031 +0.996 0.002 0.001 0.001 +0.021 0.001 0.977 0.001 +0.001 0.008 0.001 0.99 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.942 0.056 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.004 0.994 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_161_ANAGACTAATACW +0.993914 0.002949 0.0026375 0.0005 +0.08926425 0.3538489375 0.190019875 0.3668671875 +0.7765411171875001 0.003481828125 0.1945023359375 0.02547471875 +0.083343734375 0.1428103984375 0.7606592578125 0.013186515625 +0.8858446884765625 0.033848291015625004 0.0539849599609375 0.026322095703125 +0.023436531249999996 0.923313267578125 0.023720615234375 0.0295296376953125 +0.0446202001953125 0.2186298623046875 0.03851207421875 0.698238029296875 +0.878644013671875 0.029170197265625 0.05227949609374999 0.0399063984375 +0.6910134677734374 0.247075845703125 0.0263111240234375 0.0355995751953125 +0.0273217275390625 0.082975337890625 0.028315473632812498 0.8613872158203124 +0.95235677734375 0.004039416015625 0.03168569433593749 0.0119180859375 +0.00893396875 0.9373783017578124 0.0112129306640625 0.0424749296875 +0.557000736328125 0.016416572265625002 0.01525230859375 0.41133047851562504 + +>tree0.2_162_TGATKTGTGCATTC +0.012 0.022 0.0115 0.9545 +0.023234375 0.0025 0.95996875 0.014296875 +0.9796875 0.00915625 0.003296875 0.007859375 +0.0045078125000000005 0.0160703125 0.005140625 0.97428125 +0.0206484375 0.0032656250000000003 0.343109375 0.6329765625 +0.22247656249999995 0.0138515625 0.166109375 0.5975625 +0.1464609375 0.1468203125 0.6969375 0.009781250000000002 +0.0140703125 0.030804687499999997 0.01321875 0.94190625 +0.0289453125 0.0829921875 0.8834765625 0.004585937500000001 +0.022515625 0.911203125 0.0226328125 0.0436484375 +0.8597187499999999 0.0061875 0.12796875000000002 0.006125 +0.0034140625000000004 0.015140625 0.014671875 0.9667734375 +0.01884375 0.0036406250000000006 0.01 0.967515625 +0.007 0.985 0.007 0.001 + +>tree0.2_163_SARTCGACTAGA +0.022 0.363 0.409 0.206 +0.847 0.006 0.138 0.009 +0.427 0.041 0.531 0.001 +0.004 0.002 0.143 0.851 +0.002 0.973 0.021 0.004 +0.002 0.001 0.876 0.121 +0.896 0.1 0.001 0.003 +0.001 0.673 0.303 0.023 +0.02 0.001 0.144 0.835 +0.667 0.001 0.106 0.226 +0.205 0.042 0.729 0.024 +0.744 0.04 0.002 0.214 + +>tree0.2_164_ATAGTGGAGCTGT +0.994371 0 0 0.005629 +0.085774875 0.1087293125 0.17591924999999997 0.6295765625 +0.867596859375 0.017972890625 0.085110703125 0.029319421875 +0.058200937499999994 0.0713265625 0.8446759375 0.0257965 +0.0113776875 0.021226859375000004 0.023247171875 0.94414840625 +0.0665670625 0.0022612812500000003 0.927631859375 0.0035398906249999996 +0.020016359375 0.020686406249999997 0.94643484375 0.01286221875 +0.9441175 0.020098078125 0.026016515625 0.009767875 +0.021481890625 0.042460203125 0.67559615625 0.26046159375 +0.191047953125 0.743410484375 0.0342388125 0.031302515625 +0.009392125 0.05128378125 0.005017906250000001 0.9343061875 +0.08 0.01 0.909 0.001 +0.001 0.007 0.012 0.98 + +>tree0.2_165_NNGCGATYCGRG +0.312 0.345 0.296 0.047 +0.175 0.107 0.45 0.268 +0.15 0.016 0.761 0.073 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.835 0.001 0.163 0.001 +0.026 0.001 0.001 0.972 +0.001 0.495 0.001 0.503 +0.001 0.778 0.22 0.001 +0.322 0.001 0.676 0.001 +0.271 0.158 0.497 0.074 +0.193 0.189 0.52 0.098 + +>tree0.2_166_CGCGWTANAGMC +0.028 0.97 0.001 0.001 +0.001 0.001 0.97 0.028 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.548 0.001 0.128 0.323 +0.144 0.001 0.001 0.854 +0.955 0.001 0.001 0.043 +0.001 0.353 0.265 0.381 +0.766 0.029 0.087 0.118 +0.205 0.058 0.621 0.116 +0.515 0.282 0.145 0.058 +0.202 0.768 0.029 0.001 + +>tree0.2_167_CGCCTTATCYNY +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.799 0.199 0.001 +0.227 0.001 0.112 0.66 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.337 0.227 0.435 +0.12 0.253 0.466 0.161 +0.084 0.389 0.133 0.394 + +>tree0.2_168_CCGGAGACCGCC +0.284 0.657 0.001 0.058 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.058 0.94 0.001 0.001 + +>tree0.2_169_CCGGAAACCGG +0.01725 0.72275 0.05925 0.2005 +0.15025 0.731375 0.091375 0.027 +0.077625 0.0935 0.7955625 0.0333125 +0.0580625 0.027625000000000004 0.8915 0.022750000000000003 +0.8265625 0.040624999999999994 0.1298125 0.0030000000000000005 +0.982 0.001 0.003875 0.013125 +0.972625 0.001 0.001 0.025375 +0.25706249999999997 0.5713125 0.164625 0.007000000000000001 +0.0010625 0.9844375 0.0118125 0.0026875 +0.00325 0.0026875 0.9930625 0.001 +0.1425 0.001 0.748 0.1085 + +>tree0.2_170_YAAMTCCGCG +0.001 0.405125 0.001 0.592875 +0.89825 0.001 0.001 0.09975 +0.997 0.001 0.001 0.001 +0.4825 0.5155 0.001 0.001 +0.001 0.1005 0.001 0.8975 +0.001 0.930875 0.062125 0.006 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_171_GCSGAYTCCGCGA +0.014 0.056 0.916 0.014 +0.006999999999999999 0.974 0.018000000000000002 0.001 +0.001 0.493 0.505 0.001 +0.0185 0.037 0.9435 0.001 +0.988 0.001 0.01 0.001 +0.019 0.522 0.07300000000000001 0.386 +0.001 0.0925 0.048 0.8585 +0.001 0.997 0.001 0.001 +0.001 0.9795 0.0185 0.001 +0.001 0.0025 0.9955 0.001 +0.0335 0.7555000000000001 0.21 0.001 +0.006999999999999999 0.091 0.901 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_172_CGCGGAGAAGGA +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.788 0.001 0.21 +0.178 0.001 0.82 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.043 0.955 0.001 +0.558 0.112 0.218 0.112 + +>tree0.2_173_ACCTACCCAAAT +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.789 0.209 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.146 0.852 0.001 0.001 +0.001 0.789 0.209 0.001 +0.001 0.789 0.209 0.001 +0.789 0.001 0.209 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_174_GTATTMGGGTGGG +0.274 0.001 0.724 0.001 +0.001 0.001 0.163 0.835 +0.99475 0.001 0.00325 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.314 0.49950000000000006 0.001 0.1855 +0.041749999999999995 0.011500000000000002 0.94025 0.006500000000000001 +0.0027500000000000003 0.0027500000000000003 0.99125 0.00325 +0.0025 0.001 0.994 0.0025 +0.068 0.001 0.001 0.93 +0.00375 0.001 0.9935 0.00175 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_175_NNCSCCAAATCR +0.133 0.283 0.38 0.204 +0.069 0.325 0.391 0.215 +0.001 0.997 0.001 0.001 +0.001 0.477 0.521 0.001 +0.069 0.693 0.215 0.023 +0.001 0.833 0.165 0.001 +0.772 0.001 0.182 0.045 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.217 0.618 0.029 0.136 +0.315 0.05 0.612 0.023 + +>tree0.2_176_CCCGGCCAAT +0.00000888671875 0.8878793076171875 0.112097431640625 0.0000143779296875 +0.020844257812500003 0.6827830678710938 0.276852365234375 0.01952043603515625 +0.00862028125 0.8868144101562501 0.01316146923828125 0.09140365185546874 +0.27590205273437496 0.0046683232421874995 0.6946807338867187 0.024749015625 +0.010849712890625 0.0033586982421875003 0.9739057802734374 0.01188580029296875 +0.033315170898437496 0.9366263833007812 0.024844148925781247 0.005214312499999999 +0.0184788828125 0.8558182431640624 0.08838120263671874 0.0373215322265625 +0.5599610883789062 0.03195690087890625 0.1839496215820313 0.224132435546875 +0.749508203125 0.021971126953125 0.018063475585937502 0.2104571201171875 +0.05509075 0.195467625 0.009707625 0.739734375 + +>tree0.2_177_TCTCGACA +0.001 0.001 0.147 0.851 +0.053 0.683 0.051 0.213 +0.001 0.126 0.001 0.872 +0.001 0.997 0.001 0.001 +0.001 0.001 0.977 0.021 +0.8 0.001 0.001 0.198 +0.135 0.815 0.049 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_178_ANCCGWGAG +0.768878 0 0 0.231122 +0.16648100000000002 0.455975 0.139728 0.237816 +0.0005 0.995602 0.0005 0.003398 +0.0516225 0.917117 0.0005 0.0307605 +0.0005 0.0005 0.987926 0.011074 +0.6347160000000001 0.028243 0.0005 0.336541 +0.007786 0.250247 0.741467 0.0005 +0.8416954999999999 0.0005 0.1425 0.0153045 +0.3195 0.007722 0.6722779999999999 0.0005 + +>tree0.2_179_CCCYAGTGAGAT +0.001 0.997 0.001 0.001 +0.001 0.916 0.082 0.001 +0.001 0.761 0.237 0.001 +0.001 0.44 0.001 0.558 +0.768 0.21800000000000003 0.013 0.001 +0.001 0.001 0.997 0.001 +0.001 0.13 0.001 0.868 +0.001 0.001 0.997 0.001 +0.685 0.1415 0.1725 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 + +>tree0.2_180_TCWYRCYKGAG +0.1 0.173 0.172 0.555 +0.055742875 0.8331699375 0.0282796875 0.082807625 +0.541788603515625 0.043650771484375 0.031166154296874995 0.383394513671875 +0.020881322265625 0.48871906640625 0.1168852255859375 0.37351438378906254 +0.5125364541015625 0.03069948046875 0.4041319599609375 0.05263594921874999 +0.02391589453125 0.9304194873046876 0.01607766015625 0.029587024414062503 +0.035620931640625 0.30957149804687506 0.12583284082031249 0.5289747197265625 +0.023034075195312503 0.0311182470703125 0.4811912978515625 0.46465640820312504 +0.040460666992187505 0.1587586728515625 0.7747407900390625 0.026039872070312498 +0.7739390302734375 0.039135076171875 0.11918173730468752 0.067744119140625 +0.093878654296875 0.019413468750000003 0.8755066777343751 0.011201236328125 + +>tree0.2_181_RCTCTCGCGAGA +0.387 0.148 0.403 0.062 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_182_TCGCRAGAGGAA +0.061762 0 0 0.938238 +0.072162 0.927838 0 0 +0 0.058125 0.941875 0 +0 0.942073 0.057927 0 +0.322849 0.04803 0.629121 0 +0.670733 0.060009 0.019871 0.249387 +0.061102 0.030356 0.90259 0.005952 +0.898068 0 0.07616 0.025772 +0.008476 0.00553 0.984888 0.001105 +0.003104 0.013395 0.97994 0.003561 +0.959448 0.018053 0.006659 0.01584 +0.695979 0.19088 0.112549 0.000591 + +>tree0.2_183_RYACCAATCA +0.345375 0 0.654625 0 +0.070704 0.45324 0.12367 0.352386 +0.945637 0.013065 0.027801 0.013496 +0.054124 0.842999 0.101664 0.001213 +0.03181 0.96779 0.0004 0 +0.667684 0.251844 0 0.080472 +0.76999 0.009014 0.216409 0.004587 +0.009853 0.02649 0.014016 0.949641 +0.046068 0.891636 0.062297 0 +0.991376 0 0.008624 0 + +>tree0.2_184_GCACCAATCAGCRM +0.149 0.001 0.847 0.003 +0.006 0.695 0.287 0.012 +0.878756 0.016962125 0.083661625 0.02062025 +0.004597250000000001 0.7579886093750001 0.206711015625 0.030703125 +0.0616494375 0.90748209375 0.0028339374999999997 0.028034578125 +0.920392125 0.02064784375 0.009921875 0.04903815625 +0.9495924375 0.0013882656250000002 0.022433265625 0.026586031250000003 +0.0092368125 0.0746020625 0.1221863125 0.793974875 +0.001109375 0.991296375 0.0058571874999999995 0.0017370625 +0.9576434375 0.005677875 0.028114125 0.008564625000000001 +0.011 0.0055 0.9825 0.001 +0.067 0.741 0.049 0.143 +0.472 0.001 0.455 0.072 +0.426 0.395 0.111 0.067 + +>tree0.2_185_YCCYGATTGGMYG +0.14 0.496 0.001 0.363 +0.0335 0.607 0.17 0.1895 +0.0025 0.7895 0.1385 0.0695 +0.0085 0.5725 0.09225 0.32675 +0.053250000000000006 0.15975 0.658 0.129 +0.8865000000000001 0.01025 0.07475 0.0285 +0.00175 0.05450000000000001 0.018000000000000002 0.92575 +0.00625 0.001 0.001 0.99175 +0.0015 0.0045000000000000005 0.93675 0.05725 +0.03975 0.038 0.92125 0.001 +0.349 0.4175 0.04775 0.18575 +0.052500000000000005 0.4307500000000001 0.1265 0.39025 +0.258 0.091 0.6305000000000001 0.0205 + +>tree0.2_186_GCTAAAAGGGGCC +0.001 0.001 0.997 0.001 +0.004999999999999999 0.9785 0.003 0.0135 +0.001 0.001 0.001 0.997 +0.8714999999999999 0.073 0.0505 0.004999999999999999 +0.9955 0.001 0.001 0.0025 +0.991 0.003 0.004999999999999999 0.001 +0.997 0.001 0.001 0.001 +0.011 0.001 0.9685 0.0195 +0.0195 0.001 0.9685 0.011 +0.021 0.001 0.9755 0.0025 +0.0145 0.056499999999999995 0.922 0.006999999999999999 +0.006 0.982 0.004999999999999999 0.006999999999999999 +0.001 0.985 0.001 0.013 + +>tree0.2_187_CGCGGCTTTTTGCC +0.017375 0.925125 0.021375 0.036125 +0.013625000000000002 0.030957125 0.93858675 0.0168311875 +0.0063125 0.97061371875 0.00536028125 0.0177135 +0.0194890625 0.3010803125 0.67358684375 0.00584375 +0.025849593750000004 0.03580715625 0.9178979375 0.0204453125 +0.01800846875 0.91305034375 0.0200974375 0.04884375 +0.00839696875 0.00584375 0.11322684375 0.8725324375 +0.00677584375 0.009303593750000002 0.007058999999999999 0.97686153125 +0.06843784375 0.01237803125 0.01233515625 0.9068489375 +0.11095765625 0.0086436875 0.01065471875 0.86974390625 +0.012665937500000002 0.08346437500000001 0.04428775 0.8595819375 +0.0745 0.06375 0.851625 0.010125 +0.0165 0.91975 0.035 0.02875 +0.001 0.7905 0.2075 0.001 + +>tree0.2_188_CGCNGCTTTCTC +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.386 0.032 0.291 0.291 +0.001 0.001 0.997 0.001 +0.082 0.649 0.159 0.11 +0.001 0.001 0.001 0.997 +0.001 0.083 0.001 0.915 +0.001 0.001 0.08 0.918 +0.001 0.997 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 + +>tree0.2_189_GCGCSCGTTTNN +0.158 0.1955 0.5509999999999999 0.0955 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.006999999999999999 0.991 0.001 0.001 +0.001 0.499 0.499 0.001 +0.001 0.997 0.001 0.001 +0.001 0.2185 0.5485 0.232 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.0905 0.345 0.393 0.1715 +0.1095 0.3865 0.2115 0.2925 + +>tree0.2_190_GCSCCTTTGTN +0.1815 0.014 0.8029999999999999 0.0015 +0.0005 0.962053 0.00075 0.036697 +0.01707075 0.34147228125 0.53782971875 0.10362675 +0.01569425 0.78770159375 0.16726759375 0.02933634375 +0.06127228125 0.82911134375 0.01110025 0.098516125 +0.0458436875 0.0047888125 0.006104625000000001 0.943263125 +0.0440833125 0.018091375 0.02075809375 0.91706725 +0.0021886249999999996 0.1584240625 0.0016360625 0.83775125 +0.01130359375 0.016527875 0.9605825 0.011586 +0.0006648125 0.02217240625 0.140995125 0.83616790625 +0.32082725 0.01137525 0.2584966875 0.4093008125 + +>tree0.2_191_GGCGGCTTAATT +0.073 0.055 0.785 0.087 +0.036 0.018 0.945 0.001 +0.125 0.734 0.068 0.073 +0.098 0.081 0.715 0.106 +0.032 0.091 0.821 0.056 +0.038 0.869 0.018 0.075 +0.073 0.052 0.001 0.874 +0.065 0.019 0.06 0.856 +0.778 0.09 0.031 0.101 +0.846 0.036 0.037 0.081 +0.001 0.054 0.091 0.854 +0.013 0.018 0.044 0.925 + +>tree0.2_192_AGACSRAC +0.677 0.001 0.001 0.321 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.605 0.393 0.001 +0.454 0.001 0.544 0.001 +0.719 0.001 0.279 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_193_CAGRCGGCC +0 1 0 0 +0.956 0.017862 0.026137 0 +0.01324 0.041672 0.940555 0.004534 +0.343425 0.054134 0.592466 0.009974 +0.062533 0.900085 0.037382 0 +0 0.260263 0.739737 0 +0.130246 0 0.804693 0.065061 +0.034028 0.958178 0.007794 0 +0 0.802632 0.052811 0.144556 + +>tree0.2_194_GSCCATRA +0.216825 0.0066575 0.6371785 0.1393385 +0.000764 0.6472415 0.34370999999999996 0.008285 +0.0326535 0.946448 0.000389 0.0205095 +0.0199985 0.9047705 0 0.075231 +0.990516 0 0.009484 0 +0 0.0865385 0.0039225 0.909539 +0.537238 0.012232 0.446742 0.003788 +0.8559190000000001 0.0475405 0.088523 0.0080175 + +>tree0.2_195_ATCCCRCCA +1 0 0 0 +0.111878 0.238017 0.149557 0.500547 +0 0.859619 0.018429 0.121952 +0 0.960465 0.021892 0.017644 +0 1 0 0 +0.558144 0 0.441856 0 +0.040532 0.796585 0.103998 0.058885 +0 0.740659 0.259341 0 +0.903901 0.035321 0.060778 0 + +>tree0.2_196_AGGGCMCCA +0.9254105 0.0389505 0.03563925 0 +0.12904949999999998 0.00270425 0.82079225 0.04745375 +0.01125775 0.044184749999999995 0.72305725 0.2214995 +0.09517225 0.10720375 0.73579325 0.0618305 +0.05673825 0.9210155 0.0043535 0.01789275 +0.6257112499999999 0.34078549999999996 0.01455375 0.0189495 +0 0.9725815 0.01255275 0.01486525 +0.012039500000000002 0.8536635 0.010238 0.12405875 +0.954939 0.00210775 0.033829250000000005 0.00912375 + +>tree0.2_197_CGGMCACM +0.0453605 0.9142465 0.0310345 0.0093585 +0.0064395 0.0108605 0.9600335 0.0226665 +0.005584 0.0699675 0.868717 0.0557315 +0.3959085 0.568056 0.0158565 0.020179 +0.0063275 0.9754405 0.018232 0 +0.884204 0 0.0851905 0.0306055 +0 0.9598655 0.0357395 0.004395 +0.4108415 0.4969435 0.0668815 0.0253335 + +>tree0.2_198_GTGGTCCCRAGT +0.010597 0 0.989403 0 +0.032827 0.034451 0.021552 0.91117 +0.017582 0.006923 0.967278 0.008217 +0.017152 0.034259 0.896559 0.052031 +0.035214 0.221157 0.013705 0.729924 +0.054239 0.896022 0.036354 0.013385 +0.269006 0.719187 0.007425 0.004383 +0.013006 0.92885 0.008283 0.049861 +0.531609 0.066218 0.356635 0.045539 +0.845822 0.014727 0.084259 0.055191 +0 0 1 0 +0.030283 0.050981 0.062446 0.85629 + +>tree0.2_199_TGGCCGGAAGTA +0.001 0.294 0.001 0.704 +0.001 0.172 0.826 0.001 +0.106 0.001 0.892 0.001 +0.106 0.892 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.869 0.129 +0.001 0.001 0.892 0.106 +0.892 0.106 0.001 0.001 +0.958 0.04 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 + +>tree0.2_200_GTGGACAGCAGC +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.001 0.238 0.76 0.001 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_201_GTGGASYCCACC +0.001 0.107 0.891 0.001 +0.095 0.001 0.001 0.903 +0.234346 0.0078955 0.6878865 0.069872 +0.01745490625 0.04608978125 0.9298888125 0.00656621875 +0.81500503125 0.01345409375 0.14970706250000002 0.0218338125 +0.04895303125 0.31292668749999997 0.6207045 0.017415687500000002 +0.12198353125 0.55107140625 0.03516140625 0.29178346875 +0.012849 0.97029078125 0.007263312500000001 0.00959715625 +0.009025875 0.8981979687499999 0.0017625625 0.09101334375 +0.9023775625 0.04173821875 0.033867375 0.02201665625 +0.0047235 0.896331 0.06092128125 0.03802421875 +0.212683375 0.70915225 0.02513865625 0.0530256875 + +>tree0.2_202_TGCAGKACAG +0.013788 0.013656 0.0232635 0.949292 +0.17212699999999995 0.031021875 0.696956125 0.09989475 +0.109349625 0.582695625 0.182798375 0.12515625 +0.82557375 0.052455 0.045597250000000006 0.076374 +0.1146335 0.01679375 0.775772125 0.092800875 +0.069082 0.113702 0.4144195 0.402797 +0.839744125 0.033947374999999995 0.07220825 0.05410025 +0.015101375 0.941344 0.0203625 0.02319225 +0.910828625 0.016425250000000002 0.047442374999999995 0.0253035 +0.017308 0.0470205 0.92060925 0.01506225 + +>tree0.2_203_STGCNCGCCAC +0.007979625 0.523401 0.4672449375 0.00137425 +0.15835375000000002 0.02661415625 0.06030765625 0.7547241874999999 +0.073470359375 0.06062603125 0.79086371875 0.075039765625 +0.060797484375 0.6256861874999999 0.02635115625 0.287165109375 +0.35974215625 0.299407921875 0.3171549375 0.023694828125 +0.031453875 0.8383491249999999 0.049807296875 0.0803895 +0.25628176562499994 0.035855828125 0.6811011875 0.026761390625 +0.024535015625000003 0.87679153125 0.06236531249999999 0.03630821875 +0.08860796875 0.611585328125 0.22562703125 0.07417984375 +0.857236625 0.038620984375 0.0946181875 0.009524421875 +0.00380290625 0.8608200312500001 0.046729375 0.08864753125 + +>tree0.2_204_CAGCGASTAA +0.001 0.997 0.001 0.001 +0.83 0.001 0.168 0.001 +0.063 0.001 0.935 0.001 +0.001 0.935 0.001 0.063 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.437 0.5609999999999999 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_205_TAGASGCNGA +0 0 0 1 +0.89566621875 0.050767875 0.014255999999999998 0.039309906250000005 +0.02229521875 0.04737353125 0.9175581875 0.0127730625 +0.79403215625 0.0073115625 0.00664415625 0.19201209375 +0.08945596875 0.50594140625 0.36086403125 0.043738437500000005 +0.0861859375 0.06272659375 0.830292625 0.02079465625 +0.02389409375 0.927010625 0.02392946875 0.02516571875 +0.42638790625 0.13230603125 0.2350408437500001 0.2062649375 +0.0081765 0.02074578125 0.8977184062499999 0.07335953125 +0.803643 0.116596375 0.06948700000000001 0.0102735 + +>tree0.2_206_TTAACTCKGTGAG +0.040625 0.005875 0.032875 0.920625 +0.0238903125 0.0914375 0.048715 0.835957125 +0.9642064375 0.033501 0.001287125 0.0010054375 +0.95971875 0.0033685624999999996 0.0329375 0.0039751875 +0.097238375 0.716090875 0.16585825 0.0208125 +0.0009375 0.007084687500000001 0.0010926875 0.9908851875 +0.0012005625 0.9951765625 0.002685375 0.0009375 +0.001476875 0.0232185625 0.445973125 0.5293314375 +0.001952 0.007888375 0.969347125 0.0208125 +0.001 0.2295 0.001 0.7685 +0.001 0.001 0.965 0.033 +0.933 0.033 0.033 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_207_TTTACWCTGAAA +0.055 0.042 0.056 0.847 +0.001 0.001 0.001 0.997 +0.187 0.22 0.024 0.569 +0.997 0.001 0.001 0.001 +0.205 0.64 0.154 0.001 +0.337 0.248 0.001 0.415 +0.001 0.767 0.086 0.146 +0.046 0.001 0.009 0.944 +0.132 0.04 0.755 0.073 +0.643 0.196 0.015 0.146 +0.843 0.001 0.155 0.001 +0.655 0.155 0.084 0.106 + +>tree0.2_208_GATGGCCGAAYA +0.096 0.001 0.807 0.096 +0.6333685 0.1079165 0.018953 0.239762 +0.030878 0.0065878125 0.07462506249999999 0.88790875 +0.0349381875 0.00203634375 0.9590980625 0.003927281249999999 +0.0617288125 0.01931721875 0.89892459375 0.020029375 +0.15784746875 0.8128449687499999 0.01232378125 0.016983875 +0.10151471875 0.8462159687499999 0.002037125 0.05023228125 +0.16937446875 0.006235062499999999 0.7912557812500001 0.033134687499999996 +0.97575925 0.00696390625 0.009228656250000002 0.008048125 +0.8837275 0.05289675 0.010651 0.052724875 +0.04506896875 0.47001571875 0.032100375 0.45281490625 +0.92674 0.000901 0.069359 0.003 + +>tree0.2_209_TGTTTAGCTA +0.001 0.006 0.001 0.992 +0.09675 0.001 0.90125 0.001 +0.001 0.053500000000000006 0.001 0.9445 +0.001 0.251 0.05375 0.69425 +0.001 0.2685 0.006 0.7244999999999999 +0.7097500000000001 0.001 0.28825 0.001 +0.001 0.19225 0.7755000000000001 0.03125 +0.001 0.997 0.001 0.001 +0.03125 0.097 0.001 0.8707499999999999 +0.96425 0.001 0.03375 0.001 + +>tree0.2_210_TCCTATTCGGCC +0.0015860000000000002 0.0544615 0.000375 0.9435775 +0.00849196875 0.91523078125 0.017697625 0.05857962500000001 +0.006305921875 0.90248578125 0.014044984375 0.07716306249999999 +0.005795390625000001 0.05764665625 0.00357921875 0.932978515625 +0.8863688437499999 0.04016246874999999 0.0477745625 0.025694125 +0.021217281249999997 0.0429014375 0.0437378125 0.892143484375 +0.04370084375 0.012523296875 0.011863890625000002 0.931912 +0.06707184374999998 0.7122821875 0.013443984375 0.207201953125 +0.16763159375 0.0110885 0.7982214375 0.023058484375 +0.031711062500000005 0.014031875 0.93198453125 0.02227253125 +0.02247728125 0.94882871875 0.01489978125 0.0137941875 +0.014117 0.9652205 0.0077875 0.012875 + +>tree0.2_211_CCCTTTTAGCCAN +0.061812500000000006 0.8345 0.0540625 0.049625 +0.024375 0.8935 0.0228125 0.0593125 +0.033241921875 0.6916593906249999 0.0601990390625 0.21489965625 +0.032419843749999996 0.0783413203125 0.018203625 0.8710353515625 +0.026690125 0.023584960937500003 0.02228565625 0.92743925 +0.04173753125 0.05328628125 0.0461218828125 0.8588542734375 +0.096993578125 0.13876742187500002 0.04435581250000001 0.719883125 +0.8002391953125 0.07916840625 0.082839109375 0.0377533203125 +0.1182843828125 0.0242341484375 0.8083308671875 0.049150789062500005 +0.0290123671875 0.868343640625 0.0272826328125 0.075361390625 +0.049420867187499995 0.8929522578125 0.0097248359375 0.0479020234375 +0.813874875 0.1581150625 0.0146056875 0.01340440625 +0.383523 0.290293 0.042945 0.283239 + +>tree0.2_212_AAGATCCGCCTA +0.859 0.139 0.001 0.001 +0.997 0.001 0.001 0.001 +0.139 0.001 0.859 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.001 0.997 +0.14 0.719 0.001 0.14 +0.001 0.997 0.001 0.001 +0.085 0.001 0.913 0.001 +0.001 0.997 0.001 0.001 +0.14 0.719 0.14 0.001 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 + +>tree0.2_213_GCGGGCRGATCA +0.0441545 0.101962375 0.852246125 0.001637 +0.11359405249023438 0.6619594207153321 0.02762009893798828 0.1968263504638672 +0.2162625054397583 0.015916654167175293 0.7535741215209961 0.014246675216674803 +0.02526704542541504 0.045746938041687016 0.9155259036560058 0.013460613563537597 +0.03700998704528808 0.011869561790466308 0.9497872173995972 0.0013332786712646485 +0.1609499198684693 0.7298321262283325 0.006813762763977051 0.10240415121459964 +0.5326948280868531 0.007208192581176758 0.4496066341171264 0.010490394737243652 +0.0188268237991333 0.03308961186981201 0.9402104124298096 0.00787311051940918 +0.9033291948623656 0.035904807373046875 0.04765081957244873 0.013115189193725589 +0.04848312640380859 0.0436969626159668 0.12982942219543456 0.7779905436859131 +0.01906087429046631 0.8296729817810058 0.1093918837890625 0.0418737229309082 +0.80880421875 0.0079890625 0.138509625 0.04469709375 + +>tree0.2_214_TCAAGCAGTCCAS +0.039 0.034 0.091 0.836 +0.001 0.783 0.1195 0.0965 +0.9845 0.0135 0.001 0.001 +0.9155 0.0195 0.064 0.001 +0.074 0.001 0.877 0.048 +0.001 0.9775 0.001 0.0205 +0.94 0.001 0.001 0.058 +0.001 0.001 0.988 0.01 +0.001 0.001 0.0665 0.9315 +0.197 0.5609999999999999 0.014 0.2285 +0.001 0.9235 0.032 0.0435 +0.6995 0.0225 0.001 0.277 +0.072 0.47 0.305 0.153 + +>tree0.2_215_TTAGGGAGGTTA +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.995 0.003 0.001 0.001 +0.001 0.001 0.709 0.289 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.989 0.009 0.001 0.001 + +>tree0.2_216_ATTCGGCAGTTT +0.939 0.059 0.001 0.001 +0.059 0.001 0.001 0.939 +0.001 0.059 0.059 0.881 +0.12 0.82 0.059 0.001 +0.088 0.001 0.91 0.001 +0.001 0.001 0.997 0.001 +0.001 0.806 0.134 0.059 +0.681 0.259 0.059 0.001 +0.059 0.14 0.8 0.001 +0.001 0.059 0.001 0.939 +0.001 0.001 0.059 0.939 +0.119 0.001 0.059 0.821 + +>tree0.2_217_AAARYWGCCAAA +0.715 0.031 0.054 0.2 +0.90607915625 0.01077265625 0.0743819375 0.008766312500000002 +0.59382062890625 0.1277499140625 0.18716880468749997 0.0912296015625 +0.34066946875000004 0.07123970312500001 0.473272515625 0.11481813671875 +0.03552591796875 0.5693188124999999 0.065709591796875 0.329414369140625 +0.329940705078125 0.01515236328125 0.051165998046875 0.603740998046875 +0.0365866015625 0.25616483203125 0.65849744140625 0.04875121484375 +0.065198595703125 0.836300154296875 0.03921635546875 0.05928495898437501 +0.14423459765625 0.7578190546875 0.0682297578125 0.0297166171875 +0.921204630859375 0.035000583984375 0.01425901953125 0.02953588671875 +0.624433169921875 0.037791298828125 0.212335330078125 0.12544020703125 +0.720931875 0.07503435156249999 0.13080409375000002 0.0732297109375 + +>tree0.2_218_GGCTTGGCTGGC +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.0045000000000000005 0.9935 0.001 0.001 +0.001 0.001 0.001 0.997 +0.001 0.001 0.001 0.997 +0.003 0.011 0.985 0.001 +0.001 0.001 0.997 0.001 +0.001 0.995 0.001 0.003 +0.001 0.001 0.001 0.997 +0.001 0.0055 0.9925 0.001 +0.001 0.001 0.976 0.022 +0.001 0.997 0.001 0.001 + +>tree0.2_219_GCANCCCAGCCA +0.001 0.265 0.711 0.023 +0.001 0.957 0.041 0.001 +0.794 0.119 0.05 0.037 +0.374 0.053 0.263 0.31 +0.008 0.625 0.31 0.057 +0.001 0.997 0.001 0.001 +0.276 0.634 0.025 0.065 +0.761 0.025 0.213 0.001 +0.026 0.009 0.931 0.034 +0.001 0.897 0.079 0.023 +0.001 0.923 0.041 0.035 +0.991 0.007 0.001 0.001 + +>tree0.2_220_GTCGAGSCA +0 0 1 0 +0 0.106561 0.015998 0.877441 +0 0.875495 0.085353 0.039152 +0.062944 0.297591 0.639465 0 +0.951309 0.00273 0.025975 0.019986 +0.004985 0.067545 0.886621 0.040849 +0.045588 0.547255 0.301868 0.10529 +0.021692 0.972703 0 0.005606 +0.945765 0.005953 0.019096 0.029185 + +>tree0.2_221_AAGCCKCGMC +0.6755234375000001 0.172433375 0.02680675 0.1252365 +0.8849130625 0.03575175 0.0471811875 0.03215396875 +0.03977721875 0.02259975 0.926547875 0.01107521875 +0.05240053124999999 0.76681346875 0.1067181875 0.07406787499999999 +0.02781384375 0.874843125 0.05866759375 0.03867525 +0.13089090625 0.100770125 0.4564849375 0.3118541249999999 +0.0323853125 0.63415240625 0.01959265625 0.31386971875 +0.017027125 0.047595875 0.9109760625 0.0244010625 +0.42418653125000005 0.45993890625 0.08008490625 0.03578925 +0.04038515625 0.89385053125 0.025766937500000003 0.039997375 + +>tree0.2_222_ASTCACGCC +0.98213 0.007219 0 0.010651 +0.016602 0.628212 0.341305 0.01388 +0.045291 0 0.03792 0.91679 +0.003162 0.991652 0.0037 0.001486 +0.932215 0.014137 0.025033 0.028615 +0 0.648062 0.232992 0.118946 +0 0 0.94068 0.05932 +0.036498 0.929762 0.02129 0.01245 +0 0.773282 0.004937 0.221781 + +>tree0.2_223_AACAGGTAAWAC +0.783 0.056 0.055 0.106 +0.997 0.001 0.001 0.001 +0.003 0.995 0.001 0.001 +0.907 0.001 0.001 0.091 +0.001 0.001 0.997 0.001 +0.001 0.104 0.6 0.295 +0.055 0.001 0.001 0.943 +0.763 0.013 0.143 0.081 +0.761 0.154 0.011 0.074 +0.478 0.16 0.001 0.361 +0.84 0.001 0.087 0.072 +0.026 0.743 0.142 0.089 + +>tree0.2_224_ACTGGTACCA +0.763539 0 0.228555 0.007906 +0 0.7918095 0.0390175 0.1691725 +0.082326 0.0046835 0.0201875 0.8928035000000001 +0.0037585 0.0007645 0.947976 0.047501 +0.0672635 0.083369 0.8321135 0.0172535 +0.011369 0.166466 0.029831000000000003 0.792334 +0.890937 0.014835 0.0600535 0.0341745 +0.012446 0.827056 0.0223395 0.1381595 +0.054712 0.8727320000000001 0.001854 0.070702 +0.877706 0.02859 0.002155 0.091549 + +>tree0.2_225_AAATRGTGC +0.812269 0 0.151733 0.035998 +0.894536 0.059007 0 0.046457 +0.948817 0.039741 0 0.011442 +0.001178 0.022052 0 0.976771 +0.373408 0 0.621311 0.005281 +0 0.29749 0.683375 0.019135 +0.003005 0.0021 0.00697 0.987925 +0.057754 0.00584 0.919663 0.016743 +0.159878 0.751677 0 0.088445 + +>tree0.2_226_GGCACCACGC +0 0 0.947152 0.052848 +0.037298 0 0.857298 0.105404 +0.16439 0.828587 0.007023 0 +0.858817 0.086133 0.032278 0.022772 +0.024404 0.951462 0 0.024133 +0 0.985765 0.010149 0.004086 +0.974312 0.025688 0 0 +0 0.706309 0.183395 0.110296 +0.134587 0.273323 0.559733 0.032357 +0.032279 0.937191 0 0.03053 + +>tree0.2_227_TCTTTTTGC +0.00221875 0.03634725 0.01000575 0.951428375 +0.0188629375 0.8794705 0.0537781875 0.0478884375 +0.008955000000000001 0.08673924999999999 0.006808125 0.89749775 +0.017158937500000002 0.29369925 0.023995500000000003 0.66514625 +0.0098509375 0.03274225 0.002347875 0.9550589375 +0.0018741875 0.02377175 0.007582875000000001 0.9667711875 +0.172338625 0.020805375 0.008622875 0.7982329375 +0.0111638125 0.017909750000000002 0.9033811875 0.06754525 +0.007751625 0.7717120625 0.0039258125000000005 0.216610625 + +>tree0.2_228_WTYTCCCTTCGC +0.659 0.001 0.001 0.339 +0.001 0.001 0.296 0.702 +0.001 0.506 0.001 0.492 +0.001 0.001 0.001 0.997 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.001 0.85 0.001 0.148 +0.001 0.001 0.001 0.997 +0.149 0.001 0.001 0.849 +0.001 0.997 0.001 0.001 +0.178 0.001 0.82 0.001 +0.001 0.997 0.001 0.001 + +>tree0.2_229_GCTAMGGGAGAC +0.136751 0 0.863249 0 +0.032505 0.844282 0 0.123213 +0 0 0 1 +0.783701 0.032693 0.102793 0.080813 +0.632101 0.335908 0.016222 0.015768 +0.0617 0.127112 0.803541 0.007648 +0.071892 0.057418 0.814315 0.056375 +0.017795 0.040406 0.93813 0.003669 +0.880457 0.002696 0.065368 0.051478 +0.234879 0.026439 0.720998 0.017684 +0.914944 0.005334 0.050396 0.029327 +0.198768 0.717253 0.030418 0.05356 + +>tree0.2_230_TGWCCCYTYGCA +0.001 0.001 0.001 0.997 +0.282 0.001 0.716 0.001 +0.492 0.001 0.001 0.506 +0.001 0.997 0.001 0.001 +0.001 0.997 0.001 0.001 +0.172 0.826 0.001 0.001 +0.001 0.498 0.001 0.5 +0.001 0.001 0.001 0.997 +0.001 0.506 0.001 0.492 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_231_TNTCCMTTT +0.1706801435546875 0.13345949121093748 0.0243260224609375 0.6715347138671874 +0.3540691865234375 0.246011056640625 0.1306691494140625 0.26925040625 +0.029738838867187502 0.0764614521484375 0.020981616210937495 0.8728492958984375 +0.028191209960937495 0.6126109560546875 0.19717868066406247 0.162018939453125 +0.019120279296875 0.8963352392578124 0.0242117607421875 0.0603324892578125 +0.3596822802734375 0.4202023876953125 0.083991369140625 0.1361239375 +0.0516695703125 0.2412303251953125 0.0350684501953125 0.6720317734375001 +0.048676282226562506 0.0518845986328125 0.086579482421875 0.8128598134765626 +0.0845205546875 0.10884075 0.0607727578125 0.7458659140624999 + +>tree0.2_232_TGMAAGGRTG +0.0395 0.0005 0.1317845 0.8282155 +0.0737585 0.026226 0.8371525 0.062863 +0.562228 0.4113375 0.0037355 0.022699 +0.9671195 0.0095435 0.01686 0.006477 +0.85734 0.0064915 0.094749 0.04142 +0.034507 0.000745 0.964248 0.0005 +0.0596815 0.008229 0.922934 0.0091555 +0.5501925 0.07176 0.313303 0.06474450000000001 +0.053798 0.01225 0.054191 0.879761 +0.214146 0 0.785854 0 + +>tree0.2_233_TCACCCTSSC +0 0 0 1 +0 0.7811585 0.210184 0.008658 +0.9529565 0 0.0470435 0 +0.1781905 0.6705265 0.070259 0.081024 +0.0331635 0.935263 0.022274500000000003 0.0092985 +0.0099445 0.958066 0.0148125 0.017177 +0.0215015 0.017865 0.009176 0.9514575 +0 0.554032 0.28034349999999997 0.1656245 +0.028823 0.5565034999999999 0.379425 0.035249 +0 0.9077975 0.062802 0.0294005 + +>tree0.2_234_TGACCTTT +0.001 0.001 0.001 0.997 +0.12 0.001 0.8494999999999999 0.0295 +0.8955 0.1025 0.001 0.001 +0.001 0.997 0.001 0.001 +0.227 0.7424999999999999 0.0295 0.001 +0.001 0.1545 0.001 0.8434999999999999 +0.001 0.1425 0.0085 0.848 +0.001 0.001 0.0665 0.9315 + +>tree0.2_235_GTACTGGTA +0.00494275 0.087028 0.90456025 0.003469 +0.02421025 0.02369475 0.010383 0.9417125 +0.83381825 0.0204285 0.13658575 0.00916725 +0.0144455 0.8567175 0.10765875 0.021178 +0.0712445 0.06745025 0.00193025 0.859375 +0.11380975 0.002872 0.883318 0 +0.16568775 0.01024875 0.8165125 0.007551 +0.151348 0.23308425 0.03673925 0.578829 +0.929275 0 0.059802499999999995 0.0109225 + +>tree0.2_236_TRCTAGGGCAGT +0.0045000000000000005 0.002 0.001 0.9925 +0.31107175 0.0034999999999999996 0.58727275 0.0981555 +0.01923275 0.952105 0.023912 0.00475 +0.03406275 0.06318175000000001 0.030401 0.8723545 +0.8539380000000001 0.057134500000000005 0.05283925 0.03608825 +0.05341775000000001 0.00188575 0.94044625 0.00425 +0.0464705 0.08508199999999999 0.86119775 0.007249750000000001 +0.07812325 0.0031855 0.91242475 0.0062664999999999995 +0.0097125 0.96950925 0.00759375 0.013184250000000002 +0.9439715 0.008557 0.04236575 0.005105999999999999 +0.036 0.005261 0.9397455 0.0189935 +0.1097815 0.15468900000000002 0.113244 0.622286 + +>tree0.2_237_GAATATCCCW +0 0.052305 0.890456 0.057239 +0.91144475 0.003509 0.03097775 0.05406875 +0.95084175 0.0123085 0.02718725 0.00966225 +0.04214 0.04412425 0.01193125 0.9018045 +0.921028 0.026781250000000003 0.025699 0.02649175 +0.008616 0.006996250000000001 0.015504 0.96888375 +0.07203925 0.6573565 0.13635725 0.1342475 +0.04168125 0.8611467500000001 0.077312 0.01986 +0.11869775 0.802461 0.0325405 0.046301 +0.501318 0.010399 0.06021700000000001 0.428066 + +>tree0.2_238_CGGAATTTCACA +0.127 0.871 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.082 0.916 0.001 +0.997 0.001 0.001 0.001 +0.976 0.022 0.001 0.001 +0.001 0.001 0.082 0.916 +0.082 0.001 0.001 0.916 +0.001 0.001 0.001 0.997 +0.001 0.771 0.001 0.227 +0.689 0.001 0.083 0.227 +0.082 0.916 0.001 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_239_TCACTATCA +0.00112 0.055318 0.000428 0.943134 +0.012268 0.872637 0.030003 0.085092 +0.746778 0.154494 0.005607 0.09312 +0.198097 0.78272 0.016449 0.002734 +0.124026 0.064057 0.000067 0.81185 +0.845472 0.007937 0.021735 0.124856 +0.00172 0.007256 0.060394 0.93063 +0.01065 0.888261 0.021767 0.079323 +0.960668 0.005592 0.02838 0.00536 + +>tree0.2_240_TCCATYKCACY +0.015173 0.039928 0.29212 0.65278 +0.006432 0.97011575 0.0014555000000000002 0.0219965 +0.021023 0.833234 0.14481825 0.000925 +0.96899825 0.0078695 0.01065275 0.01247975 +0.0021955 0.105693 0.03802325 0.85408825 +0.0424085 0.446862 0.0420745 0.46865475 +0.03459775 0.02968025 0.6235152500000001 0.31220725 +0 0.9577555 0.0023405 0.039904 +0.9247475 0.04169175 0.026604499999999996 0.00695625 +0.014443 0.98222 0.003337 0 +0 0.515287 0.14295 0.341764 + +>tree0.2_241_ATACAATTCA +0.662299 0.056257 0.281444 0 +0 0.052622 0 0.947378 +0.947247 0.0112855 0 0.0414675 +0.206896 0.787649 0 0.005455 +0.790476 0.056439 0.000689 0.152396 +0.7616335000000001 0 0.2052975 0.033069 +0 0.036072 0 0.963928 +0.003532 0.035623999999999996 0.0475515 0.9132925 +0.012035 0.984977 0 0.0029885 +0.84333 0.076208 0.017641 0.062822 + +>tree0.2_242_NCATTRTATC +0.0758495 0.442572125 0.282076 0.19950212499999995 +0.0743764375 0.7170525625 0.087124125 0.121446375 +0.94388703125 0.0043335625 0.0220958125 0.0296835625 +0.032558375 0.0820066875 0.0039585 0.88147671875 +0.1435099375 0.0903021875 0.082517625 0.6836703125 +0.48745590625 0.01179296875 0.47194821875 0.0288028125 +0.15414865625000002 0.047846937500000006 0.00950746875 0.78849690625 +0.8565426875000001 0.06018065625 0.032880375 0.05039625 +0.00489128125 0.0554275625 0.041738375 0.89794303125 +0.01172625 0.68205971875 0.09753425 0.20867984375 + +>tree0.2_243_GAARTTCMA +0.117737 0.054635125 0.8028668750000001 0.0247605 +0.8154435 0.0387601875 0.1347404375 0.01105575 +0.9602790625 0.0264088125 0.0060608749999999986 0.007251187500000001 +0.3648695 0.0178995625 0.60386575 0.013365125 +0.06255356249999999 0.0691429375 0.0269950625 0.841308375 +0.0116621875 0.2350976875 0.07781831250000001 0.6754219375 +0.0312885 0.944384 0.0123523125 0.0119751875 +0.5976019375000001 0.31422956250000006 0.060996625 0.02717225 +0.899261 0.02929975 0.01627625 0.055162875 + +>tree0.2_244_AYWGAAYKCAC +0.903802 0.001746 0.062681 0.031771 +0.0085685 0.4498755 0.026258 0.51529825 +0.27375462500000003 0.0478615 0.1794455625 0.49893825 +0.037915 0.0224956875 0.919009375 0.020579671875 +0.8359367734375001 0.0293678125 0.1179353984375 0.016759984375000002 +0.8525194296874999 0.08724207812500001 0.04651671875 0.013721796875 +0.15312957031250002 0.4607306015625 0.05861274999999999 0.327526515625 +0.1255276484375 0.0829541328125 0.470379265625 0.32113877343749997 +0.0095604453125 0.9048201484375 0.02859975 0.057019453125 +0.6688379765625 0.2011289921875 0.0955141875 0.0345188125 +0.0994313125 0.6815008437500001 0.13965375 0.07941434375 + +>tree0.2_245_TTTNAAWGC +0.044 0.039999999999999994 0.0395 0.8765000000000001 +0.06794675781250001 0.03553440625 0.07522953125000001 0.8212893046874999 +0.1717016328125 0.053865687499999995 0.22997389062499995 0.5444587890625 +0.3845596015625 0.2818920703125 0.2592663046875 0.07428203125 +0.7093708671875 0.213872125 0.023430671875 0.0533263359375 +0.716288453125 0.190211984375 0.06493175000000001 0.0286303125 +0.5479770078125 0.0208113984375 0.0267537578125 0.4044578359375 +0.0421003828125 0.026766242187499997 0.903179609375 0.027953765625 +0.0310464921875 0.77489465625 0.0786659140625 0.1153929375 + +>tree0.2_246_ACATTCGAG +0.592296 0.257927 0.122135 0.027642 +0.300112 0.631651 0.006497 0.06174 +0.805471 0.041052 0.153476 0 +0.013139 0.214921 0.092401 0.679539 +0.035209 0.083344 0.020991 0.860455 +0.009559 0.971576 0.007287 0.011578 +0 0.020118 0.975281 0.004601 +0.926674 0.006276 0.067051 0 +0 0 1 0 + +>tree0.2_247_CGGAATGY +0.001 0.997 0.001 0.001 +0.008 0.1505 0.8405 0.001 +0.1215 0.001 0.8765000000000001 0.001 +0.8260000000000001 0.001 0.172 0.001 +0.928 0.0485 0.001 0.0225 +0.001 0.001 0.001 0.997 +0.001 0.001 0.798 0.2 +0.091 0.4085 0.1125 0.388 + +>tree0.2_248_TTAGANTT +0.001 0.001 0.075 0.923 +0.001 0.102 0.001 0.896 +0.643 0.138 0.07 0.149 +0.001 0.159 0.839 0.001 +0.701 0.088 0.094 0.117 +0.479 0.245 0.114 0.162 +0.001 0.081 0.092 0.826 +0.117 0.001 0.192 0.69 + +>tree0.2_249_CNATTCCAT +0.02083 0.94817 0.0305 0.0005 +0.286280125 0.40072525 0.215438375 0.097431375 +0.62518859375 0.0023740312500000003 0.08691446875 0.28552293749999996 +0.05083525 0.0517928125 0.036536625 0.8608353124999999 +0.01842603125 0.00234421875 0.0034135625 0.975816125 +0.02867778125 0.8943649375 0.0709734375 0.00598384375 +0.00160025 0.89325925 0.098710375 0.0064301875 +0.7474075312499999 0.00198625 0.2029155625 0.04769065625 +0.037395625 0.0721151875 0.07382378125 0.8166654062500001 + +>tree0.2_250_ACAATTCAACA +0.976049 0 0.023951 0 +0.106811 0.7600305 0.0161695 0.1169895 +0.640826 0.1313715 0.0645565 0.1632455 +0.8909244999999999 0.0138645 0.021112 0.0740985 +0.039095 0.0242875 0.037819 0.898799 +0.056791499999999995 0.056587000000000005 0.117132 0.7694894999999999 +0.0125665 0.933357 0.031378500000000004 0.0226975 +0.665189 0.0084005 0.0102035 0.3162065 +0.841959 0.0469995 0.094898 0.016143499999999998 +0.096704 0.6182605 0.15216749999999998 0.132868 +0.9390545 0.0442815 0.0045755 0.0120885 + +>tree0.2_251_CGCCGGAAAG +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.666 0.332 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_252_TTGCKKCG +0.001 0.028 0.001 0.97 +0.001 0.001 0.001 0.997 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.521 0.477 +0.127 0.001 0.363 0.509 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_253_TCACCGCAA +0.005601515625 0.170166921875 0.1082715 0.715960015625 +0.00586334375 0.979363109375 0.00913065625 0.005642890625 +0.8241366562500001 0.0145784375 0.15607801562499998 0.005206703125 +0.00061584375 0.95806346875 0.01907284375 0.02224809375 +0.0434789375 0.826959515625 0.054485921875 0.07507553125 +0.216117828125 0 0.733218765625 0.050663421875 +0.00479775 0.8798451875 0.0431095 0.0722475625 +0.6865689687500001 0.15556309375 0.14658075 0.0112871875 +0.6853528125 0.00938546875 0.11707834375 0.18818284375 + +>tree0.2_254_CTGGAWGAC +0.0566745 0.88380875 0.02973425 0.02978225 +0.0591865 0.08669900000000001 0.0032175 0.850897 +0.018167 0.07469025 0.7229045000000001 0.1842385 +0.020304 0.01172575 0.90646975 0.0615005 +0.829658 0.07307675 0.068261 0.02900425 +0.3916547500000001 0.080159 0.011387 0.51679925 +0.0534185 0.02221425 0.876441 0.04792625 +0.77749375 0.0156135 0.067914 0.13897900000000002 +0.010171 0.8573172499999999 0.06877875 0.063733 + +>tree0.2_255_GYCGTCGA +0.001 0.203 0.795 0.001 +0.105 0.558 0.001 0.336 +0.001 0.858 0.001 0.14 +0.001 0.001 0.963 0.035 +0.176 0.001 0.001 0.822 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.997 0.001 0.001 0.001 + +>tree0.2_256_AANGTAGTAC +0.908324 0.013531 0.078145 0 +0.5630585 0.0989715 0.23675 0.10097 +0.30417075000000005 0.27914760937500005 0.3059055625 0.110752140625 +0.032469890625 0.0153125 0.93566878125 0.016548828124999998 +0.027466796875 0.221055609375 0.0216996875 0.72977840625 +0.71585328125 0.181787703125 0.030021484374999997 0.07233753125 +0.0281175625 0.087651859375 0.8487774531250001 0.035453125 +0.06539875 0.0403893125 0.05805478125000001 0.836155203125 +0.8308439218749999 0.039017578125 0.089116796875 0.041021703125 +0.051515625 0.811109375 0.0615703125 0.0758046875 + +>tree0.2_257_ACGGTMSWG +0.9985 0.0005 0.0005 0.0005 +0.005875 0.8391470000000001 0.005375 0.149603 +0.008125 0.07757649999999999 0.900236 0.0140625 +0.0734905 0.0259225 0.8855145 0.0150725 +0.0183125 0.1581345 0.0005 0.823053 +0.489415 0.2865265 0.0443125 0.17980849999999998 +0.0879185 0.5252465 0.3863345 0.0005 +0.403956 0.024625 0.0005 0.570919 +0.0033750000000000004 0.045190999999999995 0.87341 0.07802399999999998 + +>tree0.2_258_TTASGGCG +0.004375 0.2418125 0.0090625 0.74475 +0.06078125 0.028125 0.0415625 0.8695625 +0.79973575 0.03675 0.12925425 0.03422875 +0.18259374999999997 0.34294800000000003 0.45328125 0.021177 +0.188755 0.25236725000000004 0.5118048749999999 0.047197875 +0.06775962499999999 0.0523125 0.871300375 0.0086275 +0.0470625 0.91212825 0.038537 0.00227225 +0.000875 0.092431125 0.8580688750000001 0.048625 + +>tree0.2_259_GCGNYTWNN +0.001 0.001 0.997 0.001 +0.00909375 0.973125 0.0161875 0.00159375 +0.004687500000000001 0.054625 0.92796875 0.01271875 +0.16321875 0.28253125 0.4045 0.14984375 +0.12928125 0.37384375 0.07025 0.426625 +0.26937500000000003 0.0830625 0.0615 0.5861875000000001 +0.34846875 0.11459375 0.09603124999999998 0.4409375 +0.47178125 0.03871875 0.26128124999999996 0.2280625 +0.29703124999999997 0.17471875 0.3361875 0.19190625 + +>tree0.2_260_TMGAACGYN +0 0 0.005791 0.994209 +0.3467997734375 0.4949551015625 0.0983125 0.05993259375 +0.13562528125 0.023501 0.7830837187499999 0.05778996875 +0.5542400390625 0.0680994375 0.170857046875 0.2068034765625 +0.6499826171875 0.0838139765625 0.228583125 0.0376202890625 +0.1739518828125 0.5905036875 0.18846790625 0.0470766484375 +0.03936753125 0.0898171953125 0.76104684375 0.1097684296875 +0.1222609453125 0.47349748437499994 0.1101801328125 0.29418633593750004 +0.185842765625 0.0921798828125 0.44923246875 0.2729949921875 + +>tree0.2_261_AYCCGCAGT +0.821467 0 0 0.178533 +0.038617 0.511746 0 0.449637 +0.039527375 0.934332125 0.007604125 0.0185365 +0.11471175 0.6899635 0.122218 0.07310649999999999 +0.07429925 0.00508825 0.890192875 0.0304195 +0.004157 0.8946212499999999 0.06782474999999999 0.033396749999999996 +0.8529217499999999 0.08070574999999999 0.051564625 0.01480775 +0 0.036656 0.963344 0 +0.2921825 0.023583 0.07805200000000001 0.606182 + +>tree0.2_262_GCWACGG +0.21860025 0.053145125 0.541829125 0.1863005 +0.1558419375 0.5741643750000001 0.1426194375 0.12731150000000002 +0.3569375 0.0526706875 0.0402841875 0.5500450625 +0.5137316875 0.1553309375 0.0781319375 0.2527429375 +0.00425 0.9265783125 0.04077 0.028401625 +0.00275 0.09343675 0.88481325 0.019 +0.26398625 0.00643025 0.7042440625 0.0253394375 + +>tree0.2_263_ACTTCKGGA +0.811215 0 0.096982 0.091804 +0.007714 0.976493 0.012698 0.003094 +0.002339 0.21096 0.023425 0.763276 +0.260998 0.04759 0.002237 0.689176 +0.005783 0.961969 0.032249 0 +0.108649 0.011181 0.516642 0.363529 +0.030454 0 0.969546 0 +0.027542 0.019627 0.947079 0.005752 +0.920476 0.032578 0.03636 0.010586 + +>tree0.2_264_TTTNNCGGT +0.09577496875 0.24619053125 0.07769525000000001 0.5803393125 +0.044264875 0.10174696875 0.00824040625 0.8458727500000001 +0.03515921875 0.04565928125 0.054058125 0.8649984375 +0.2393881875 0.41212250000000006 0.0205223125 0.327967 +0.31135381250000005 0.40449959375 0.061342125 0.22292946875000005 +0.054742 0.8075390625 0.10448696875 0.03348196875 +0.0188203125 0.27245975 0.689687875 0.019032125 +0.0563848125 0.2640448125 0.61253334375 0.067162 +0.17772149999999998 0.122096 0.114 0.5866825 + +>tree0.2_265_GAAGCGGGAAN +0.0959193359375 0.0254493828125 0.8624341796874999 0.016196914062499998 +0.84144228125 0.0375203359375 0.0535294765625 0.0675079140625 +0.8305731132812499 0.034783136718749996 0.11661830859375 0.01802556640625 +0.03418487109375 0.06767093359375001 0.8822141562500001 0.015929546875 +0.07690081640625 0.831228984375 0.0154303984375 0.07643980859375 +0.0217738984375 0.0909261484375 0.8519143515625001 0.03538609765625 +0.07598323828125 0.1674834140625 0.71919008984375 0.037343121093749994 +0.0132368671875 0.01946883203125 0.93155225 0.035742027343749996 +0.581523 0.072199015625 0.26799728125 0.07828065625 +0.8942565 0.035931 0.0285 0.0413125 +0.0305 0.219509 0.32999100000000003 0.42 + +>tree0.2_266_ACCCGCGCA +0.8652245000000001 0.012397 0.03895 0.0834285 +0.183994875 0.60807075 0.06442081250000001 0.1435135625 +0.21190646875 0.59874325 0.0473225625 0.14202775 +0.1060665625 0.6043475 0.01460125 0.274984875 +0.18175640625 0.001657375 0.7800764375 0.03650978125 +0.0129400625 0.93466590625 0.00622725 0.04616678125 +0.03879175 0.00313778125 0.94462634375 0.013444125 +0.18678140625 0.5793311875 0.11029059375 0.1235970625 +0.8653285 0.078338625 0.01178475 0.044423375 + +>tree0.2_267_CNNCGCSGAA +0.128 0.764 0.059 0.049 +0.21708534375 0.23558728125 0.16372075 0.383622234375 +0.404338310546875 0.15323330810546876 0.13515384228515626 0.30729799609374997 +0.033548903320312504 0.5431427553710937 0.16902943994140623 0.254278908203125 +0.036920716308593754 0.18571027734375 0.7239749790039063 0.053395001953125 +0.022602515625 0.6864966567382812 0.17691710302734376 0.11398371777343748 +0.20633982421875 0.3427164873046875 0.43681715869140625 0.01461869921875 +0.06911829785156251 0.198895640625 0.7170909970703125 0.0148950625 +0.913775177734375 0.0101210791015625 0.0442053818359375 0.03189835546875 +0.718173791015625 0.2136760107421875 0.030755633789062504 0.0373945654296875 + +>tree0.2_268_CMCNCCGRRA +0.105474 0.894526 0 0 +0.4117451875 0.37460953125 0.11311971875 0.1005880625 +0.136921716796875 0.7212327695312499 0.075565966796875 0.066217083984375 +0.22631303515625 0.057881181640625 0.4306685390625 0.285137251953125 +0.010465794921875 0.863668916015625 0.094597201171875 0.031268033203125 +0.040784306640625 0.7669655156249999 0.1486633984375 0.043582904296875 +0.017659662109374998 0.0642733046875 0.909890486328125 0.0081725703125 +0.434999896484375 0.05872513867187499 0.4825748125 0.023700201171874997 +0.275928376953125 0.156382626953125 0.52210230859375 0.045649197265625 +0.89684000390625 0.01789367578125 0.02867237890625 0.05659394921875 + +>tree0.2_269_AAAAAYGTGCCA +0.792752 0.063 0.144247 0 +0.76103 0.023834 0.153096 0.062039 +0.929055 0.013552 0.023749 0.033645 +0.844652 0.126203 0.007835 0.02131 +0.814586 0.020532 0.158258 0.006624 +0.108154 0.498102 0 0.393744 +0.011851 0.013952 0.974197 0 +0.026638 0.009527 0 0.963835 +0.008324 0.009643 0.932303 0.049731 +0.045138 0.6447 0.255355 0.054806 +0.016497 0.864036 0.005018 0.114449 +0.88081 0.038601 0.04741 0.033179 + +>tree0.2_270_CAACSTGGCA +0 0.97413 0.020852 0.005019 +0.801113 0.0301875 0.036086 0.1326145 +0.850833 0.0299885 0.0189655 0.1002135 +0 0.8162815 0.0988495 0.0848685 +0.006523 0.3252695 0.6293575 0.03885 +0.003668 0.0150765 0 0.9812555 +0.2030345 0.006876500000000001 0.775571 0.0145175 +0.025626 0.187944 0.7726145 0.013815999999999998 +0.06402250000000001 0.730225 0.1620405 0.043712 +0.977132 0.012939 0.003329 0.006599 + +>tree0.2_271_GCTCRTCCKGGC +0.001 0.001 0.994 0.004 +0.006 0.992 0.001 0.001 +0.001 0.2435 0.001 0.7545 +0.024 0.958 0.0045000000000000005 0.013500000000000002 +0.4645 0.001 0.501 0.0335 +0.004 0.001 0.001 0.994 +0.083 0.6605 0.17650000000000002 0.08 +0.049 0.865 0.0825 0.0035 +0.001 0.043 0.4515 0.5045 +0.0375 0.0825 0.879 0.001 +0.001 0.009000000000000001 0.9865 0.0035 +0.0455 0.9475 0.0035 0.0035 + +>tree0.2_272_AGCCAGGASGTT +0.954824 0 0 0.045176 +0.007053 0.023779 0.964562 0.004607 +0.022887 0.965253 0.006091 0.00577 +0.012466 0.985619 0.000616 0.001299 +0.783473 0.108611 0.043215 0.064701 +0.152809 0.025009 0.733516 0.088666 +0.179979 0.037053 0.782041 0.000927 +0.840636 0.069485 0.017183 0.072696 +0.10222 0.375386 0.505492 0.016903 +0.186979 0 0.7573 0.055721 +0 0 0.084771 0.915229 +0.011661 0.050819 0.18991 0.74761 + +>tree0.2_273_GAACACSSTGGCKG +0.044185 0 0.95268 0.00313475 +0.764210125 0.036822625 0.157677875 0.041289375 +0.601194625 0.026299374999999996 0.0764695 0.29603625 +0.0505691875 0.65657140625 0.040844375 0.252014875 +0.9210779082031252 0.02771592578125 0.036951787109375 0.01425401953125 +0.02524227539062501 0.589179623046875 0.24619369140625 0.139384609375 +0.13046617578125 0.391969109375 0.39343405273437504 0.08413059375 +0.061387607421875 0.351316291015625 0.560857484375 0.026438999999999997 +0.04305759179687499 0.02347274609375 0.03136372265625 0.90210594921875 +0.033379474609375 0.01044962109375 0.9189578203125 0.03721326953125 +0.036425611328125 0.04277672460937501 0.8824863281249999 0.0383113515625 +0.065273162109375 0.8429371347656249 0.045701173828125 0.04608877734375 +0.113761765625 0.0701541953125 0.4020296875 0.41405421875 +0.139573 0.028692 0.805542 0.026193 + +>tree0.2_274_CGCCNGWGCTGTA +0.072059 0.866967 0 0.060974 +0.058092 0.0085 0.904283 0.029125 +0.0235 0.9100725 0.0419035 0.024524 +0.0570335 0.8178030000000001 0.055663500000000005 0.0695 +0.322702 0.4124095 0.065909 0.198979 +0.145513 0.0741035 0.7684059999999999 0.011977 +0.5374829999999999 0.018485 0.013694499999999998 0.430337 +0.032727 0.009086 0.92298 0.035207 +0.0130815 0.9348875 0.027155 0.024876 +0.0337615 0.013119 0.0069215 0.9461985 +0.089 0.07651150000000001 0.7929120000000001 0.0415765 +0.0518735 0.026437 0.27237100000000003 0.6493185 +0.8606944999999999 0.10394 0.0115 0.0238655 + +>tree0.2_275_TACAGAMGGGG +0.083198 0.195859 0 0.720943 +1 0 0 0 +0.01129 0.938387 0.03681 0.013514 +0.991133 0.004355 0.004511 0 +0.032091 0.104931 0.862978 0 +0.98379 0 0 0.01621 +0.4392 0.553241 0.00756 0 +0 0.027941 0.972059 0 +0.026206 0.045116 0.880055 0.048623 +0.124883 0.010834 0.793573 0.070711 +0.028349 0 0.971651 0 + +>tree0.2_276_ATACACGTYGGC +0.93507 0.06493 0 0 +0.040967 0.169502 0.048609 0.740922 +0.80359 0.17857 0.017839 0 +0 0.786041 0.009427 0.204532 +0.946336 0.014517 0.039147 0 +0 1 0 0 +0.005043 0.036734 0.894534 0.063689 +0.005808 0.059828 0.096723 0.837641 +0.11366 0.368874 0.10221 0.415255 +0.035367 0.024173 0.863806 0.076654 +0.001462 0.043005 0.89168 0.063853 +0.010936 0.983366 0 0.005698 + +>tree0.2_277_GACAGGCSTCGK +0.053131 0 0.781966 0.164902 +0.919574 0 0.041059 0.039367 +0.067641 0.858311 0.074048 0 +0.96164 0.010241 0.00546 0.02266 +0 0.307151 0.672964 0.019885 +0.045797 0.018092 0.73247 0.20364 +0.009765 0.924208 0.039133 0.026894 +0.040116 0.527063 0.391891 0.040929 +0.079185 0.029791 0.006209 0.884814 +0.015268 0.903536 0.071652 0.009544 +0.06865 0.096645 0.710268 0.124437 +0 0.060532 0.606212 0.333257 + +>tree0.2_278_CAAGCCTTGG +0.022750000000000003 0.854625 0.0185 0.104125 +0.932344875 0.054876375 0.009983 0.00279575 +0.942727875 0.003249375 0.019363125 0.034659625 +0.0480045 0.00151 0.94784725 0.00263825 +0.08549612499999999 0.720721875 0.134188875 0.059593125 +0.01470575 0.92343275 0.011238 0.0506235 +0.0205065 0.013705875 0.014951 0.950836625 +0.03193475 0.05803825 0.136204 0.7738229999999999 +0.1252895 0.02447375 0.79421425 0.05602225 +0.0329445 0.007508 0.954751125 0.004796375 + +>tree0.2_279_GACYAGCSTGGG +0.001 0.028 0.97 0.001 +0.97 0.028 0.001 0.001 +0.008627625 0.930755375 0.043123125 0.017494250000000003 +0.033380875 0.58828325 0.021688 0.356647875 +0.767138875 0.005642375 0.20976275 0.017456 +0.005130625 0.029685 0.930356 0.034828125 +0.005043499999999999 0.958590875 0.01287725 0.02348825 +0.001598375 0.40585125 0.592050375 0.0005 +0.0478195 0.014025875 0.001516125 0.936638625 +0.000940625 0.042744625 0.950277 0.00603775 +0.095723 0.17274125 0.67177375 0.059762 +0.0178 0.023455 0.958245 0.0005 + +>tree0.2_280_CAGACCCCAGAA +0.001 0.948 0.001 0.05 +0.8214997500000001 0.00280325 0.033951875000000006 0.141745125 +0.023701031250000004 0.013759984375 0.951967515625 0.010571421875 +0.8872384375 0.078923453125 0.008625640625 0.025212437499999997 +0.10007059375 0.729346828125 0.022193375 0.148389203125 +0.045967625 0.8218561718749999 0.008665125 0.123511078125 +0.0672799375 0.8816765625 0.020465093749999996 0.0305785 +0.00942125 0.8595383281250001 0.011273968749999998 0.11976653125000002 +0.815517359375 0.03586290625 0.13926025 0.009359390625 +0.04241296875 0.155275390625 0.776592140625 0.025719671875 +0.88118165625 0.08154859375 0.0148179375 0.0224516875 +0.8904834374999999 0.056964125 0.028177875 0.0243745625 + +>tree0.2_281_GCAGATTCTACA +0.07525000000000001 0.01125 0.9055 0.008 +0.018500000000000003 0.6545000000000001 0.0155 0.3115 +0.905271234375 0.0129086171875 0.059768523437500005 0.0220516328125 +0.0876787265625 0.0844005625 0.80390227734375 0.024018421875 +0.77176505078125 0.06870497656249999 0.12706586328125 0.03246420703125 +0.15195461328124998 0.0302700546875 0.1082790859375 0.7094963046875 +0.052297210937500005 0.02367987890625 0.04188037109375001 0.8821425624999999 +0.01373711328125 0.91124630078125 0.01179188671875 0.06322483203125 +0.0393810625 0.07891403124999999 0.01019324609375 0.8715115703124999 +0.56787168359375 0.25214170703125 0.14519020703125 0.03479637109375 +0.01796081640625 0.92751090234375 0.0179838515625 0.03654450000000001 +0.79784003125 0.0762904609375 0.08845140625 0.0374180859375 + +>tree0.2_282_CATAGSGTTWCT +0.292 0.643 0.064 0.001 +0.941 0.057 0.001 0.001 +0.047 0.001 0.001 0.951 +0.902 0.096 0.001 0.001 +0.001 0.001 0.973 0.025 +0.001 0.624 0.374 0.001 +0.001 0.001 0.997 0.001 +0.243 0.001 0.001 0.755 +0.006 0.001 0.001 0.992 +0.348 0.022 0.022 0.608 +0.048 0.903 0.048 0.001 +0.001 0.048 0.001 0.95 + +>tree0.2_283_YRGAGTCTYGCT +0 0.585091 0 0.414909 +0.387866234375 0.0017315625 0.605641515625 0.0047606875 +0.01680605859375 0.02217603515625 0.956987931640625 0.00402978515625 +0.7920143681640626 0.023182984375 0.166475517578125 0.018326936523437504 +0.023074817382812494 0.030846329101562497 0.943207826171875 0.0028710205078124997 +0.1786625908203125 0.01256914453125 0.04131812890625 0.76745010546875 +0.11944121484375 0.79919350390625 0.01134171484375 0.0700237265625 +0.024838736328125 0.113869544921875 0.0049280107421875 0.8563638955078126 +0.00733025 0.4954131533203125 0.047059716796875 0.450196939453125 +0.0928721728515625 0.01691409765625 0.8700518046875001 0.0201618515625 +0 0.955523494140625 0.024602525390625 0.01987387109375 +0.0027255 0.02702375 0.056386 0.91386475 + +>tree0.2_284_AGAGAWACCCTAW +0.7076 0.034975 0.016668 0.240756 +0.02310325 0.01260375 0.9618355 0.00245725 +0.5405438124999999 0.055759937499999995 0.165815625 0.2378805625 +0.05469645043945313 0.10375091491699218 0.8318009688720703 0.009751735107421876 +0.9789447396240234 0.0073676044921875 0.010124756469726562 0.0035628271484375 +0.5016800964355469 0.009566579345703126 0.10897461108398436 0.3797786977539062 +0.7980175064697266 0.006910960693359375 0.17598636267089843 0.019085017578125 +0.02318459716796875 0.8526622114257812 0.08765103808593751 0.036502110839843754 +0.039928322265625 0.831981111328125 0.015045243774414062 0.11304526489257812 +0.12289616357421874 0.6514931300048827 0.05851509533691406 0.16722060717773438 +0.05983683129882812 0.058524329956054694 0.22301728698730472 0.6586216848144532 +0.795182001586914 0.007101237670898437 0.16541394433593748 0.03230275476074219 +0.5222678354492187 0.121867076171875 0.0163575400390625 0.3395075703125 + +>tree0.2_285_CACGGAGTYTCG +0 0.976123 0 0.023877 +0.8695995850601197 0.0573124073791504 0.05352295392227172 0.019564984294891355 +0.019905464159011843 0.6390544094810486 0.03315707254219055 0.307883028295517 +0.23165843288612364 0.03898979883384704 0.6998979005432129 0.029453924757003785 +0.04123992310905457 0.07402527499580383 0.8165899989528655 0.06814484482955933 +0.5595449913024902 0.0919505549621582 0.26349070713806155 0.08501379451179505 +0.04118142381477356 0.026335109491348267 0.89023358218956 0.04225003084754944 +0.04888531520462036 0.05554099518585205 0.04529296276664734 0.8502806189250947 +0.022210495769500738 0.522603304512024 0.04247970029258728 0.41270651057243346 +0.05116121411705018 0.026853517896652215 0.03869409063148498 0.8832911389122009 +0.015220385009765624 0.6329531774902344 0.12973038793945313 0.22209588818359377 +0.118977802734375 0.103810603515625 0.5852879453125001 0.19192350390625 + +>tree0.2_286_TARANCCTRT +0.001 0.001 0.001 0.997 +0.914331 0.0187025 0.052236 0.0147305 +0.5541515 0.144594 0.2989525 0.0023025 +0.924461 0.0097355 0.0005 0.0653035 +0.2424575 0.2437455 0.49970500000000007 0.014092 +0.07190150000000001 0.801958 0.092765 0.0333755 +0.0172025 0.8477735 0.134524 0.0005 +0.01923 0.0041075 0.12868849999999998 0.847974 +0.3765 0.202091 0.3982245 0.023184499999999997 +0.270399 0.0272455 0.0005 0.7018549999999999 + +>tree0.2_287_ATAAACKCTCGT +0.765 0.029 0.08 0.126 +0.044 0.021 0.021 0.914 +0.897 0.021 0.032 0.05 +0.587 0.027 0.145 0.241 +0.873 0.057 0.026 0.044 +0.186 0.588 0.174 0.052 +0.026 0.068 0.379 0.527 +0.026 0.878 0.026 0.07 +0.09 0.026 0.101 0.783 +0.005 0.892 0.008 0.095 +0.005 0.261 0.729 0.005 +0.067 0.036 0.05 0.847 + +>tree0.2_288_NNAGCGTTTANN +0.258 0.257 0.237 0.248 +0.243 0.307 0.156 0.294 +0.605 0.097 0.297 0.001 +0.001 0.001 0.919 0.079 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.161 0.001 0.837 +0.099 0.104 0.001 0.796 +0.241 0.001 0.12 0.638 +0.997 0.001 0.001 0.001 +0.286 0.184 0.318 0.213 +0.455 0.223 0.128 0.195 + +>tree0.2_289_GGCRWYGCCTCA +0.001 0.002 0.996 0.001 +0.0045000000000000005 0.001 0.9815 0.013 +0.001 0.97 0.001 0.028 +0.661 0.001 0.336 0.002 +0.3335 0.023 0.0025 0.641 +0.005 0.498 0.001 0.496 +0.151 0.002 0.8460000000000001 0.001 +0.001 0.9825 0.001 0.0155 +0.0195 0.9625 0.001 0.017 +0.0015 0.0435 0.0015 0.9535 +0.001 0.971 0.001 0.027 +0.6915 0.001 0.287 0.0205 + +>tree0.2_290_GAGGACMCGC +0.014601 0 0.985399 0 +0.8063359999999999 0.077425 0.048722 0.067516 +0.024036 0.022095 0.952753 0.0011155 +0.0478935 0.005008 0.945212 0.0018865 +0.814255 0.1049985 0.031025 0.0497215 +0.0245915 0.6505715000000001 0.3222625 0.0025745 +0.3398245 0.550501 0.0170965 0.092578 +0.0331855 0.8727750000000001 0.085197 0.0088425 +0.0097365 0.012211 0.9748085 0.003244 +0.265568 0.665496 0.048541 0.020395 + +>tree0.2_291_CTTTGACTCC +0.057718 0.902235 0.040047 0 +0.03350375 0.0315098125 0.003868375 0.931118 +0.009673125 0.0009299999999999998 0.0197173125 0.969679625 +0.0056513125 0.1202909375 0.01222225 0.8618355 +0.134980375 0.016672125 0.7978484375 0.0504981875 +0.69141725 0.033756125 0.2728363125 0.0019903125 +0.01341525 0.783125 0.1289094375 0.0745501875 +0.0000625 0.0222435625 0.00848675 0.9692071875 +0.1601605 0.6894434375 0.0931394375 0.05725625 +0.046140125 0.853938 0.004651875 0.09527 + +>tree0.2_292_GCTKSSSCTCC +0.001 0.001 0.997 0.001 +0.0012975625 0.8725438750000001 0.1256585 0.0005 +0.01165325 0.019242875 0.0412033125 0.9279005625 +0.003316187500000001 0.07774400000000001 0.3319655625 0.58697425 +0.0538623125 0.5853070625 0.3171198125 0.043710875 +0.0196765 0.360485875 0.61251375 0.0073240625 +0.0404615625 0.32771524999999996 0.5651845 0.06663868749999999 +0.041226687500000005 0.8795015625 0.026730875 0.052540812500000006 +0.040934875 0.021630625 0.0317008125 0.905734 +0.0020038749999999996 0.87979975 0.0153285 0.1028679375 +0.0388045 0.82345375 0.0282745 0.10946725 + +>tree0.2_293_TTCSGRCTCNT +0.009339875 0.197602875 0.08587075 0.7071866250000001 +0.023084374999999997 0.044608734375 0.049256875000000006 0.8830500156250001 +0.0223135625 0.86528828125 0.021973328125000004 0.090424734375 +0.10518218749999998 0.551912265625 0.306793671875 0.0361116875 +0.068534796875 0.028276609375 0.89004475 0.013144078125 +0.509241984375 0.112115375 0.274859390625 0.103783359375 +0.020885906250000003 0.6234253750000001 0.284432296875 0.071256484375 +0.0335423125 0.029960421874999997 0.031736375 0.904760953125 +0.015422203125 0.849072046875 0.030091265625 0.105414484375 +0.390242359375 0.34973243750000005 0.234576359375 0.02544859375 +0.162558 0.038583 0.020416 0.778443 + +>tree0.2_294_TYMGTCTCC +0 0 0 1 +0.00283 0.653063 0.012221 0.331886 +0.388061 0.464307 0.03563 0.112003 +0.014738 0 0.856192 0.12907 +0 0.034857 0 0.965143 +0.025664 0.930688 0.00951 0.034138 +0.022997 0.018791 0 0.958212 +0.057871 0.919676 0.022453 0 +0.008937 0.916806 0.042264 0.031992 + +>tree0.2_295_SNCYKYGSCCTC +0.01081615625 0.47538465625 0.49672775 0.01707146875 +0.43306004296875 0.061966021484375 0.23789113671875 0.26708284374999997 +0.03818725 0.8666104765625 0.042214601562499995 0.0529875078125 +0.110813970703125 0.437137287109375 0.0388365390625 0.4132122421875 +0.029674555419921873 0.15186561035156249 0.5126137636718751 0.3058462028808594 +0.11722799694824218 0.38707712414550777 0.04025030615234375 0.4554445867919922 +0.3002817131347656 0.040168330932617194 0.6032328190917968 0.056317248046875 +0.15405729357910156 0.3866939633789062 0.3963459040527344 0.06290289257812501 +0.08061021728515624 0.8465331651611328 0.027798769775390628 0.04505774365234376 +0.056331458129882814 0.5430846882324218 0.22951002355957031 0.17107381970214844 +0.034794395263671875 0.09467853491210936 0.03035517541503906 0.8401719962158203 +0.002598642822265625 0.975749553466797 0.011801696533203124 0.009850108642578126 + +>tree0.2_296_MGGAGKTCGAGAC +0.5 0.3824485 0.09953225 0.01801925 +0.0554579453125 0.042168140625 0.85026025390625 0.05211379296875 +0.012064194869995116 0.02257640435791016 0.9624510749130248 0.002908329818725586 +0.9161788959045408 0.018988457054138187 0.05451696529388428 0.010315739784240724 +0.10520996738433835 0.0755683505706787 0.8116251193618775 0.007596706451416016 +0.07689921733093262 0.07760813190460206 0.4634139827957153 0.38207875649261475 +0.04510470960235595 0.07645888536834716 0.1312247975616455 0.7472115402145386 +0.031107692817687983 0.6979633117370605 0.10375428572845458 0.1671747866668701 +0.1287017702178955 0.03687475044250488 0.831390686340332 0.003032844589233399 +0.8734772249984741 0.042582134895324704 0.03150745713806152 0.05243305362701416 +0.005493359771728516 0.0026860350341796875 0.9892878992004396 0.002532704071044922 +0.7800739372558594 0.0841802265625 0.1250339375 0.010712159423828124 +0.0116830625 0.87077625 0.1073515 0.0101896875 + +>tree0.2_297_AAGGGAATWYC +0.64372303125 0.2285129375 0.0749311875 0.052832875 +0.8753621874999999 0.07053404687499999 0.0289559375 0.025147578125 +0.05573725 0.03009403125 0.8326127187500001 0.0815560625 +0.053233375 0.205400875 0.6252296718749999 0.11613609375 +0.19841326562500003 0.010258734375 0.7588240156249999 0.032503953125 +0.94832209375 0.019748296875 0.015652046875 0.016277515625 +0.8620157500000001 0.02117090625 0.0789935625 0.03781984375 +0.03888428125 0.07367246875 0.040838296875 0.846604921875 +0.440662609375 0.0212633125 0.0439526875 0.494121453125 +0.034308375 0.575231890625 0.01186153125 0.378598140625 +0.04869153125 0.8435025625 0.0286065 0.07919940625 + +>tree0.2_298_ANAATGGAATANNA +0.773022 0.065381 0.008963 0.152633 +0.4639325 0.07188125000000001 0.283509 0.18067725 +0.79620803125 0.15272390625 0.0204316875 0.0306363125 +0.9111674609375 0.03771578125 0.03555696875 0.0155601640625 +0.0648693984375 0.05328657812500001 0.055637140625 0.8262065390625 +0.05840532031250001 0.007361015625 0.9076318125 0.0266020234375 +0.06705675 0.03053675 0.8816781484375 0.0207285 +0.829135375 0.0304340234375 0.07225208593749999 0.0681785625 +0.56495859375 0.2135456171875 0.024774421875 0.196721390625 +0.0730386328125 0.1584718046875 0.0623198125 0.7061698671875001 +0.6120970703125 0.226874921875 0.08684971875 0.074178328125 +0.46004846875 0.2357040859375 0.17750994531249997 0.1267373515625 +0.33293550000000005 0.33429825 0.08469549999999999 0.24807075 +0.962273 0.0075 0.020727 0.0095 + +>tree0.2_299_AAACGGCACACCA +0.997 0.001 0.001 0.001 +0.8415 0.0235 0.0495 0.0855 +0.933 0.0285 0.0135 0.025 +0.036 0.6888125 0.0405 0.2346875 +0.2395 0.032 0.6865 0.042 +0.0176875 0.035500000000000004 0.9046875 0.042125 +0.0345 0.8202499999999999 0.107625 0.037625 +0.871 0.032625 0.06775 0.028625 +0.0205 0.882875 0.05 0.046625 +0.8420000000000001 0.1215 0.009000000000000001 0.0275 +0.021125 0.95 0.01225 0.016625 +0.085625 0.8708125 0.0125 0.0310625 +0.920875 0.0375 0.0205 0.021125 + +>tree0.2_300_WAATKAASTGTN +0.342 0.021 0.126 0.511 +0.603 0.02 0.228 0.149 +0.947 0.051 0.001 0.001 +0.044 0.012 0.099 0.845 +0.001 0.001 0.633 0.365 +0.768 0.03 0.201 0.001 +0.629 0.001 0.238 0.132 +0.07 0.33 0.599 0.001 +0.001 0.001 0.004 0.994 +0.001 0.019 0.957 0.023 +0.169 0.215 0.063 0.553 +0.094 0.231 0.267 0.408 + +>tree0.2_301_SCRCASATCACAAA +0.134424609375 0.31476637500000004 0.508389578125 0.0424193125 +0.03417178735351562 0.6076561470947266 0.3002114466552734 0.05796059924316407 +0.3901995150146485 0.07074239501953125 0.4432276440429688 0.0958306787109375 +0.06533645996093751 0.7400943690185546 0.026398062133789063 0.168171064453125 +0.7589891140136719 0.03750109997558594 0.1603636888427734 0.04314609814453125 +0.028145435302734376 0.45975569873046873 0.4759901735839844 0.03610851135253906 +0.8343058342285157 0.07699208361816405 0.0686545584716797 0.02004775244140625 +0.02628836572265625 0.05705487756347657 0.0876172685546875 0.8290393759765625 +0.03737338049316406 0.9009117709960938 0.03378909399414062 0.027925724365234376 +0.7273469689941406 0.19112265026855468 0.041581649902343754 0.03994883728027344 +0.03943553527832032 0.8722342780761718 0.047727654907226566 0.04060265051269531 +0.5301089626464843 0.19032818908691407 0.08623163854980467 0.1933311424560547 +0.73542172265625 0.09780818066406252 0.0835039990234375 0.083265568359375 +0.671762671875 0.12913379296875 0.1590568984375 0.04004662109375 + +>tree0.2_302_AGGTGCAGG +0.940037 0.017487 0.0162325 0.026244 +0.26726150000000004 0.0643345 0.635269 0.033135 +0.119198 0.063269 0.817533 0 +0.0440155 0.074967 0 0.8810175 +0 0.0328115 0.9671885 0 +0.0731725 0.855661 0.053395 0.0177715 +0.8687845000000001 0.015314499999999998 0.029569 0.08633249999999999 +0 0.150921 0.844338 0.004741 +0.030716 0 0.969284 0 + +>tree0.2_303_AWSTGCTAGCA +0.942046 0.05425 0.003704 0 +0.5671155 0.07696750000000001 0.055412 0.30050475 +0.013047875 0.317613375 0.504554875 0.16478375 +0.00241625 0.067702875 0.04455487500000001 0.885325875 +0.020666624999999997 0.10185575 0.869184 0.008294 +0.00653675 0.823002375 0.069407125 0.101054 +0.227390625 0.0791675 0.017345125000000003 0.676096875 +0.836882875 0.001549375 0.15967937499999998 0.001888 +0.000729375 0.02082325 0.970245875 0.008201375 +0.008324999999999999 0.963734 0.023952875 0.0039882500000000005 +0.94509125 0.023809249999999997 0.00908925 0.02201 + +>tree0.2_304_AAATCTAGGW +0.950898 0 0.049102 0 +0.64655 0 0.095757 0.257693 +0.901604 0.04232 0.024581 0.031495 +0.0026445 0.0585505 0.0119465 0.9268585 +0.018886 0.85443 0.0981985 0.0284855 +0.080119 0.1318645 0.039046 0.7489705 +0.8810055 0.0097805 0.09458 0.014634 +0.022613 0.011997 0.9653895 0 +0.0009385 0.0159165 0.975875 0.0072695 +0.31964899999999996 0.2262815 0 0.4540695 + +>tree0.2_305_CWCATGGAGNCM +0.02724703125 0.84284434375 0.042197968749999995 0.08771053125000002 +0.53039784375 0.02720046875 0.006083671875 0.436317984375 +0.07328359375 0.8437878437499999 0.0160490625 0.06687959375 +0.8695058203124999 0.0270692109375 0.044368515625 0.059056429687499995 +0.01361859375 0.07425563671875 0.0268404609375 0.885285328125 +0.1100563125 0.0018717695312500005 0.84807347265625 0.039998265625 +0.04445091796875 0.0111285546875 0.89123755859375 0.05318311328125 +0.91369946875 0.01509367578125 0.03467625390625 0.03653065625 +0.2705354765625 0.0213669296875 0.5522731796875 0.15582445312499998 +0.31321196875 0.14529100390625 0.1240222421875 0.4174747890625 +0.1195756953125 0.777719234375 0.0917453671875 0.0109597265625 +0.598153484375 0.35806642187500004 0.02791878125 0.015861328124999997 + +>tree0.2_306_GCATKCRTSY +0.14431009472656248 0.07091170117187501 0.7419675156250001 0.0428106533203125 +0.1247814814453125 0.621346443359375 0.16354958691406252 0.090322482421875 +0.754375026611328 0.11659693286132812 0.09036780078125 0.03866021899414063 +0.059337625732421864 0.059257150390625 0.046471235595703125 0.8349340126953124 +0.056208822265625 0.10832730810546874 0.4615740061035156 0.3739210666503906 +0.017007940673828124 0.909859104736328 0.020707681396484375 0.0524253056640625 +0.5201759367675781 0.094090515625 0.33846054638671874 0.04728881591796875 +0.13280383959960937 0.258819775390625 0.06719708471679689 0.5411832092285156 +0.1502803996582031 0.38418040869140624 0.4401561066894531 0.02538315112304687 +0.0951014638671875 0.3164401879882813 0.14609747021484376 0.4423608090820312 + +>tree0.2_307_WWYGCRWS +0.485 0.001 0.001 0.513 +0.501 0.001 0.153 0.345 +0.208 0.318 0.001 0.473 +0.001 0.001 0.759 0.239 +0.001 0.997 0.001 0.001 +0.434 0.001 0.564 0.001 +0.418 0.001 0.001 0.58 +0.001 0.376 0.622 0.001 + +>tree0.2_308_GSCAARACAATK +0.001 0.251 0.694 0.054 +0.01125 0.556625 0.377125 0.055 +0.053730802734375 0.835512587890625 0.059200630859375 0.051555984375 +0.6539913730468749 0.091676583984375 0.17415091796875 0.08018114843749999 +0.8642990156249999 0.025305865234375 0.020100873046875 0.090294212890625 +0.527631521484375 0.046322314453125 0.37747921875000007 0.04856691015625 +0.779089197265625 0.037811224609375 0.1206691640625 0.0624305078125 +0.1350994296875 0.8126469824218749 0.037321421875 0.014932111328125 +0.8013558710937501 0.13100962890625 0.05797808593750001 0.009597810546875 +0.8878876796875 0.01128142578125 0.049485128906249995 0.05134580859375 +0.028221759765625 0.02453903515625 0.034002197265625 0.91323706640625 +0.02347746484375 0.0197557890625 0.40106562890625 0.5557011328125 + +>tree0.2_309_ARCATGGTACTGGN +0.61524225 0.19105125 0.01288025 0.18082625 +0.48217325 0.01380725 0.482336 0.02168325 +0.1525238203125 0.6839722460937501 0.10075828125 0.0627457890625 +0.8282069296875 0.03276657421875 0.10758801464843752 0.031438498046875 +0.03027490234375 0.0334059140625 0.0287859267578125 0.907533681640625 +0.111923884765625 0.015046091796875 0.861421208984375 0.011608955078125 +0.065912591796875 0.0505950986328125 0.8639703339843751 0.0195220986328125 +0.0885448994140625 0.1601810908203125 0.037047509765625 0.71421078515625 +0.7226022646484376 0.028057388671874996 0.20215971875 0.0471807841796875 +0.02650111328125 0.7128115546875 0.095596259765625 0.1650906748046875 +0.118556712890625 0.067885634765625 0.004548112304687501 0.8090094521484374 +0.04714338476562501 0.00990568359375 0.927286419921875 0.015664541015625 +0.06333725 0.0286581875 0.854431 0.053574187499999995 +0.249454 0.089821 0.2335445 0.427681 + +>tree0.2_310_AWTRCTKATGCA +0.729445 0.270555 0 0 +0.3151245 0.030121 0.0317055 0.623049 +0.0908745 0.038764999999999994 0.0051825 0.865178 +0.4723545 0.079067 0.4301205 0.018458 +0 0.9788385 0.007188 0.0139735 +0.211292 0.0013015 0.0237065 0.7637 +0.004895 0.013824 0.4385915 0.5426895 +0.933127 0.0647205 0.0015175 0.0006355 +0.0518685 0.0206425 0.023083000000000003 0.9044055 +0.0337045 0.0012185 0.963051 0.002026 +0.057953 0.873179 0.068868 0 +0.991826 0.008047 0.000127 0 + +>tree0.2_311_TGYYNNRACWTGY +0.3285 0.001 0.001 0.6695 +0.01490625 0.005875 0.96478125 0.0144375 +0.020296875 0.3459375 0.00909375 0.624671875 +0.1111875 0.428265625 0.01375 0.446375 +0.19584375 0.29212499999999997 0.129375 0.38215625 +0.365703125 0.07290625 0.279 0.282484375 +0.390828125 0.021609375 0.4464375 0.141109375 +0.64503125 0.001375 0.303875 0.04971875 +0.05478125 0.941359375 0.0016875000000000002 0.002171875 +0.548078125 0.08110937500000001 0.0014375 0.369375 +0.269703125 0.00575 0.0730625 0.6514843750000001 +0.0016875000000000002 0.0024375000000000004 0.994625 0.00125 +0.168875 0.42040625 0.06421875 0.34646875 + +>tree0.2_312_AATGTTMATGCYG +0.9205 0.0275 0.006 0.046 +0.597442875 0.0782435625 0.072323625 0.2519898125 +0.123904625 0.01450825 0.0601119375 0.8014748125 +0.2563579375 0.0299515 0.67130475 0.0423858125 +0.06548975 0.0512743125 0.068865375 0.814370625 +0.1282965 0.05715299999999999 0.076132375 0.738418 +0.5161104375000001 0.38940968749999993 0.0444885 0.0499913125 +0.8399365625 0.0996716875 0.021678625 0.0387133125 +0.072724 0.0138928125 0.2303664375 0.683016625 +0.087304125 0.05541325 0.8116578750000001 0.04562475 +0.08324999999999999 0.801900625 0.04375 0.07109937499999999 +0.111376625 0.34524999999999995 0.04683775 0.49653575 +0.0525 0.17227350000000002 0.7202265 0.055 + +>tree0.2_313_CTAYGGTGAAWA +0.001 0.89 0.108 0.001 +0.015174 0.0005 0.0583415 0.9259845 +0.876993 0.016868 0.1056385 0.0005 +0.00950875 0.408401 0.005425375 0.576664625 +0.130788875 0.02243825 0.7044604999999999 0.142312125 +0.040656125 0.277101125 0.6309525 0.05129025 +0.036310625000000006 0.1697595 0.0056845 0.7882450000000001 +0.0139905 0.126163875 0.71289625 0.14694925 +0.835757125 0.0188625 0.034259125 0.111121625 +0.8682488749999999 0.0086765 0.059049124999999994 0.064025375 +0.63262575 0.014942125 0.032360375 0.320071375 +0.739149125 0.010617 0.102346375 0.14788749999999998 + +>tree0.2_314_NGCTTGCACCCTS +0.263243125 0.475623875 0.2105583125 0.05057525 +0.05121944876098633 0.0339793366394043 0.8642845777893067 0.05051651806640625 +0.0308692758026123 0.761118229522705 0.06590489106750488 0.14210762510681152 +0.08069192797851563 0.10175279397583008 0.09297763955688476 0.7245775975036621 +0.03319896003723145 0.018717694915771486 0.060532910751342775 0.8875504985198974 +0.02751102763366699 0.05222095350646973 0.8259181546783447 0.09434992695617676 +0.039749917434692375 0.8053595334320068 0.017299212432861328 0.1375913486480713 +0.8851062245330811 0.030115730682373047 0.03504349412536621 0.04973451251220703 +0.02354183465576172 0.7716389238128663 0.13904271449279787 0.06579210595703125 +0.060890240234375 0.7777431602783202 0.022596486114501955 0.1387700959777832 +0.2720808671875 0.5506490703125 0.12589888671875 0.05136325781250001 +0.068478625 0.1219309375 0.0075923125 0.801998125 +0.047201375 0.411451875 0.50712559375 0.034221031250000006 + +>tree0.2_315_CGAAASTGAAASNG +0.11275 0.5375000000000001 0.173 0.17675 +0.129771125 0.0867005 0.7090070625 0.07448993749999999 +0.6077760021514893 0.030896629249572753 0.29292327418518066 0.06840015886688233 +0.9244686665802002 0.031948994384765624 0.02978011524200439 0.013802235511779785 +0.8615251923904419 0.08673225217437744 0.0335470793838501 0.018195433570861817 +0.13747232495880127 0.3217067992019653 0.5212247958221435 0.01960649160766602 +0.058118232788085936 0.1210018589706421 0.10787777976226806 0.7130038408813477 +0.06355470958709716 0.014777588653564454 0.9024209111175536 0.01924683946990967 +0.91688687335968 0.01991420245361328 0.039712966209411615 0.02348589987182617 +0.8801549865341186 0.054768771415710446 0.05160795746612549 0.01346829776763916 +0.9217037124557494 0.01981770818328858 0.039263126930236814 0.019215447547912597 +0.11454467866516112 0.43992767375183106 0.4088419675598145 0.03669591146850586 +0.09058621252441404 0.2600509866943359 0.4818594559020996 0.16752385836791994 +0.260435734375 0.088724546875 0.537893921875 0.112984875 + +>tree0.2_316_CACAGAGTKARACC +0.009 0.978 0.006 0.007 +0.8923243125 0.013297875 0.0893395 0.00503825 +0.23765541796875 0.55419335546875 0.025947976562500003 0.18220290234374997 +0.7826267212371827 0.024617315902709963 0.11467991925048827 0.07807599017333984 +0.03072591967916489 0.05420940432167053 0.8022811963181495 0.11278332413816453 +0.6456641286640167 0.027679543227672576 0.07085703948402404 0.2557994127101898 +0.0399828223131299 0.06492301815474033 0.7034335354871153 0.1916605522700548 +0.07664723458689451 0.21122938201266528 0.08920792649012804 0.6229156584993005 +0.08735746941697597 0.06977854381096363 0.3803493074567318 0.4625144236978293 +0.8027074117851258 0.026234585539817813 0.11364296211123466 0.05741508186924457 +0.5281380651620626 0.028710805014669896 0.43125226422542334 0.011898963546395304 +0.869270674612522 0.039598681188702585 0.07439895723110437 0.016731629753768445 +0.13258129678803682 0.7591732764171959 0.05487555671155451 0.05336995638793706 +0.06750593429428338 0.7415630456236004 0.12940544361311196 0.06152567553514242 + +>tree0.2_317_MTGGTSTTGARCCT +0.34228173046875 0.576821234375 0.054086148437499995 0.026811 +0.0213281236508321 0.015195297066342088 0.01896980053836294 0.9445069918573628 +0.059210279672469945 0.0220558654567916 0.7784546041038316 0.1404041955085918 +0.0768772338077873 0.034677839950837196 0.8595744539189394 0.028870468197302893 +0.030912391587287185 0.04878434049965255 0.09762783786700852 0.8226755408487506 +0.071161719421383 0.3388554458455462 0.5512032124933693 0.03877962842383422 +0.017846956868851557 0.026921422599401324 0.04598952698690817 0.9092419149138796 +0.004315702893072739 0.18120007532738333 0.1602186283167731 0.6542655353850517 +0.1581109751407746 0.039416696282049635 0.7670661415715572 0.035406120871210464 +0.7060453480791934 0.018127857713364063 0.2652619976474568 0.010564882013197987 +0.3045052939453125 0.03769561767578125 0.56108357421875 0.0967155048828125 +0.13681571874999998 0.70200009375 0.04013934375000001 0.12104453125 +0.0273125 0.8026875 0.116359375 0.053640625 +0.00446875 0.14075 0.00125 0.85353125 + +>tree0.2_318_GRGTTSGAGC +0.042 0.001 0.805 0.152 +0.501858 0.0251815 0.4533355 0.019625 +0.22070571875 0.050975562499999995 0.5787229062499999 0.14959571875 +0.14218371875 0.058412203125 0.19085068750000003 0.608553359375 +0.01956415625 0.051169171875 0.030095484375 0.8991712031250001 +0.08106842187499999 0.303408546875 0.57571359375 0.039809328125 +0.061124625 0.101664390625 0.797620046875 0.03959096875 +0.83798375 0.019566984375 0.0251855 0.1172638125 +0.109216703125 0.013062171875 0.807662125 0.070059 +0.023924578125 0.885787421875 0.043178734375 0.047109390625 + +>tree0.2_319_KKGTTACAGCNY +0.11588771875 0.09252046875 0.5265210625 0.26507078125 +0.08133515625000001 0.0439228125 0.45384103125 0.42090121875 +0.06903590625 0.03826328125 0.856078671875 0.036622171875 +0.03396153125 0.035797828125 0.291257609375 0.638983015625 +0.092202953125 0.109190265625 0.145231265625 0.6533753906249999 +0.8633050468750001 0.051641328125 0.016860203125 0.0681935625 +0.033784953125 0.914611625 0.0089485 0.04265503125 +0.892895875 0.036255046875 0.028081046875 0.042768125 +0.13733317187500002 0.0281169375 0.8080523125000001 0.0264975625 +0.025348500000000003 0.9004822187499999 0.026145515625 0.048023546875 +0.09453675 0.275692625 0.2247785 0.404992125 +0.0197885 0.5533017499999999 0.0354835 0.39142625 + +>tree0.2_320_ARATTACAGNC +0.947453 0 0.025973 0.026574 +0.5393829375 0.07798075 0.376843375 0.005792875 +0.6765325312499999 0.02633259375 0.25242046875 0.04471465625 +0.03283074999999999 0.048779875 0.0625091875 0.8558801875 +0.0361273125 0.0273381875 0.050712375 0.88582221875 +0.84166853125 0.0591810625 0.01249134375 0.0866590625 +0.00329090625 0.988299375 0.00389284375 0.0045169375 +0.8383675312500001 0.10375153125 0.00910178125 0.0487790625 +0.0299215625 0.008335125 0.954988 0.006755281250000001 +0.30655225 0.1369140625 0.1133998125 0.4431341250000001 +0.0367755 0.9201445 0.0188825 0.024197 + +>tree0.2_321_GACWTCAAACTA +0.0285 0.004750000000000001 0.9515 0.01525 +0.681 0.01825 0.2695 0.03125 +0.27475 0.66475 0.026 0.0345 +0.301 0.112 0.02125 0.56575 +0.01375 0.0175 0.034 0.93475 +0.179 0.76525 0.0295 0.02625 +0.95425 0.01625 0.006 0.0235 +0.9265 0.022 0.032 0.0195 +0.53375 0.258 0.0655 0.14275 +0.06375 0.8422499999999999 0.05225 0.041749999999999995 +0.026750000000000003 0.05 0.005000000000000001 0.91825 +0.8512500000000001 0.031 0.05625 0.0615 + +>tree0.2_322_AYSTGGAAAAGC +0.879 0.001 0.119 0.001 +0.001 0.636 0.001 0.362 +0.001 0.555 0.372 0.072 +0.042 0.004 0.001 0.953 +0.027 0.001 0.971 0.001 +0.067 0.096 0.836 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.997 0.001 0.001 0.001 +0.978 0.001 0.001 0.02 +0.065 0.001 0.703 0.231 +0.001 0.997 0.001 0.001 + +>tree0.2_323_ANCTGCRAAGG +0.8667331875 0.029664767578125 0.084908859375 0.018693099609375 +0.114577646484375 0.19557212890625003 0.19303185351562505 0.49681838671875 +0.03670969140625 0.919698341796875 0.019693703125000003 0.0238984921875 +0.031762142578125 0.04746911718750001 0.005244947265625 0.91552374609375 +0.29293355664062504 0.04259155859375 0.6185828398437501 0.045891990234375 +0.024345232421875 0.571024294921875 0.21682698828125 0.18780341015625 +0.5636429609375 0.1016770625 0.300240443359375 0.034470724609375 +0.8192528085937499 0.0526408515625 0.09865205078125 0.0294543515625 +0.9094667734375 0.018246990234375 0.0414735 0.030812642578125 +0.0094375 0.01340525 0.9313815 0.04577575 +0.1085 0.0735 0.79875 0.01925 + +>tree0.2_324_YCTCAGCARAAA +0.0166045 0.45508675 0.01807725 0.51023125 +0.034204468749999994 0.87549340625 0.00994846875 0.08035387499999999 +0.06467615625 0.0578808125 0.00914015625 0.86830290625 +0.13820271875 0.74557221875 0.0594491875 0.056775875 +0.857739625 0.05280521875 0.01023775 0.07921734375 +0.0334916875 0.07642937500000001 0.8248755 0.0652035 +0.01941309375 0.8344525 0.114463 0.0316715625 +0.6928705000000001 0.02323246875 0.04230940625 0.2415875625 +0.4057129375 0.0195299375 0.53185625 0.0429009375 +0.8353486875 0.05649875 0.0515840625 0.056568499999999994 +0.915 0.015 0.038 0.032 +0.859 0.016 0.046 0.079 + +>tree0.2_325_TMTCTGAWGATT +0.079234 0.089628 0.062717 0.768422 +0.4947303046875 0.30054025390625005 0.05360572265625 0.15112362499999998 +0.0351458984375 0.090260890625 0.0405622421875 0.8340310546875 +0.030196195312499997 0.62604244140625 0.30605019921875004 0.03771113671875 +0.2263799453125 0.01333405859375 0.025069984375 0.735215953125 +0.045990265625000006 0.049973707031249995 0.87202538671875 0.0320108359375 +0.81507671484375 0.07205136328125 0.0338358125 0.07903625390624999 +0.4754472304687501 0.0120922109375 0.15921016015624995 0.35325049609375 +0.04355994140625 0.031487234375 0.9047276484375 0.02022520703125 +0.58093394921875 0.07235119921875 0.2665505546875 0.0801646796875 +0.04368184375000001 0.188258796875 0.1006993125 0.667359921875 +0.03810075 0.027881500000000004 0.18451449999999997 0.7495032500000001 + +>tree0.2_326_TTTTTTGTAGANNC +0.0890203994731903 0.13914704502868652 0.08040203237915039 0.6914304935817719 +0.02190025062561035 0.02462023521184921 0.02747409779882431 0.926009305697918 +0.01327321498966217 0.06738193789625169 0.019911897366046902 0.8994328632903099 +0.03321314717674255 0.06655671162128449 0.026368088621616364 0.8738620510706903 +0.03026706604719162 0.05867933051156998 0.10453035859155654 0.8065232667455673 +0.1116389513115883 0.029454793750762934 0.03699147452402115 0.8219146771221161 +0.1352839700832367 0.020130251216888426 0.7343934797229766 0.1101922938323021 +0.053267510995388026 0.06910753329658509 0.16653342762613296 0.71109159928751 +0.9103882450408936 0.03527871139431 0.029762151977062223 0.02457084233140945 +0.03558833331680297 0.02612629774045944 0.916106270096302 0.02217906935310364 +0.8522000853271484 0.0294390654296875 0.034687527832031245 0.08367353454589843 +0.39034781445312505 0.3453824179687501 0.0975522412109375 0.16671748046874998 +0.086391390625 0.16360925 0.34500259375 0.4049968125 +0.009342 0.698634 0.179513 0.1125105 + +>tree0.2_327_TKCWCAGAAR +0.04258 0.002657 0.1247495 0.8300135 +0.02795553125 0.09892978125 0.5428838125000001 0.3302310625 +0.0565353125 0.8010714062500001 0.04359621875 0.09879715625 +0.41201940625 0.058791578125 0.042504984375000006 0.486684046875 +0.06864046875 0.647537328125 0.204940625 0.07888159375 +0.87390134375 0.015367421875000002 0.022345734375 0.088385484375 +0.057147859375 0.016788671875 0.90315134375 0.022912109375000003 +0.765542328125 0.13360079687499998 0.090500140625 0.0103565625 +0.725863921875 0.1825924375 0.0322585 0.05928515625 +0.587321921875 0.059910546875 0.32759040625 0.025177046875000005 + +>tree0.2_328_ACTGCTATAAAG +0.78243 0.004914 0.195355 0.017302 +0.154273 0.670391 0.031923999999999994 0.14341199999999998 +0.07421125 0.00327475 0.080232125 0.8422818750000001 +0.0856468125 0.035858562499999996 0.8487243125 0.029770625 +0.0104405 0.9204670625 0.055862875000000006 0.0132295 +0.0371031875 0.1072145 0.006897812499999999 0.848784875 +0.7387253125 0.014174375 0.228769375 0.018330875 +0.0544396875 0.0930435 0.0248223125 0.8276948125 +0.8366105625 0.003287375 0.14311975 0.016982 +0.86161675 0.0932279375 0.0264 0.0187555 +0.8702928125 0.09954768749999998 0.0222999375 0.0078591875 +0.141605125 0.22063812499999996 0.511562625 0.126193625 + +>tree0.2_329_CWCAGAWAGCTT +0.006500000000000001 0.973 0.006999999999999999 0.0135 +0.33919475 0.017948875000000003 0.07307525 0.56965625 +0.0820851328125 0.8491426328125 0.0455066875 0.02332825 +0.8169611406249999 0.0230037734375 0.1341919140625 0.025843109375 +0.04477289843749999 0.0352248203125 0.89258853125 0.0274136171875 +0.93234265625 0.036721976562499994 0.0204799921875 0.0104555 +0.4710600625 0.0204778671875 0.032592375 0.4758071875 +0.8662487421875 0.0028309765625000004 0.0697392265625 0.061181117187499995 +0.046387898437500005 0.0707391796875 0.8188713984375 0.0639390859375 +0.07612446875000001 0.8130384375 0.0603942109375 0.0504429453125 +0.007796046875 0.0201145859375 0.0264312421875 0.945658140625 +0.008380703125 0.0073926328125 0.0106335 0.9735929921875 + +>tree0.2_330_TGCAGCAAACTT +0.1492535 0.002887 0.0708745 0.776985 +0.056381 0.05241975 0.84044675 0.05075225 +0.01420095703125 0.9322385205078124 0.009853853027343751 0.0437067607421875 +0.9037441693115232 0.022610349243164067 0.00866799951171875 0.06497730151367188 +0.03745535375976562 0.005312734497070313 0.9469106441650392 0.01032125732421875 +0.11864856372070312 0.7463429786376953 0.09919248083496092 0.035815971313476566 +0.9434384356689454 0.019225936889648437 0.012947175415039062 0.02438860290527344 +0.6273501971435547 0.05786848425292969 0.3048814770507813 0.009899968383789062 +0.8637500784912109 0.043053763793945314 0.07934707507324218 0.0138489677734375 +0.07257367724609375 0.8270035778808593 0.05953610522460937 0.04088675610351562 +0.03188894897460937 0.08870724609375 0.031219309570312503 0.8481843972167968 +0.124305919921875 0.0860281396484375 0.066779056640625 0.722886796875 + +>tree0.2_331_YGCWGAAANCYRG +0.0240929375 0.4854944375 0.058837625 0.431575 +0.014911058593749998 0.024245984375 0.797389578125 0.16345337109375002 +0.1640798486328125 0.5516569882812501 0.268683029296875 0.0156426318359375 +0.45271814086914064 0.05048006396484375 0.104709306640625 0.39209227636718746 +0.18163951684570315 0.03647709643554688 0.7600996713867187 0.02177608154296875 +0.7869747663574219 0.05548327880859375 0.1316775498046875 0.025864295654296876 +0.6459943208007812 0.041793690429687495 0.2606695002441407 0.05154249584960938 +0.8001755356445313 0.0325821865234375 0.05718221166992187 0.11006009155273436 +0.21664313134765625 0.05293858422851563 0.3146376396484375 0.41578074365234374 +0.04392406787109375 0.853766751953125 0.06204540869140625 0.04026374780273438 +0.13183255493164062 0.27978408447265624 0.08720264965820312 0.5011808127441406 +0.36682334814453127 0.068458193359375 0.5113232880859375 0.05339523486328125 +0.0219081328125 0.0993175546875 0.8518595078125 0.026914796875 + +>tree0.2_332_YCYTTATCWS +0.01244 0.5198795 0.0922285 0.375452 +0.0703141875 0.5643478125 0.13050396875 0.2349591875 +0.0220501875 0.4522675 0.14504646875 0.380620234375 +0.01561009375 0.03933503125 0.022805890625 0.922249109375 +0.01137778125 0.031190328125 0.006801828125000001 0.9506300625 +0.676981453125 0.02084578125 0.021522703125 0.280649921875 +0.047083609375 0.05270090625 0.010820453125 0.88939496875 +0.02636865625 0.9428143125 0.007116703125000001 0.023700515625 +0.48688840625 0.17945128124999998 0.009089781250000002 0.324570640625 +0.120296875 0.38517143749999994 0.40898359375 0.08554818750000001 + +>tree0.2_333_GWGYTNAAC +0.11295766015624996 0.160454125 0.6883518242187501 0.03823640625 +0.4390134609375 0.0177507265625 0.03393399609375 0.50930171484375 +0.03286221484375 0.0503429921875 0.888303125 0.0284916875 +0.2105845703125 0.48826451953125 0.0307173515625 0.2704179296875 +0.101668046875 0.0299253515625 0.032121046875 0.836254234375 +0.36888560156249994 0.018631421875 0.30450806250000007 0.3079749921875 +0.8560090390625 0.02368969921875 0.041159058593750006 0.079142234375 +0.7932032265625 0.017656046875 0.07226255859375 0.11687825 +0.05403237890625 0.6648356484375 0.11353615625 0.16759579296875 + +>tree0.2_334_TGGGTTYTCTN +0.0230134375 0.023634625 0.03601075 0.9173411875 +0.0243723125 0.036782078125 0.93005434375 0.008791265625 +0.183364453125 0.016410765625000004 0.7762796640625 0.023944625 +0.168058875 0.1270882421875 0.694856265625 0.0099961015625 +0.07924267968750001 0.046229078125 0.025829343749999997 0.8486993359374999 +0.1219893046875 0.0260255234375 0.032071828125 0.8199133437499999 +0.1573048359375 0.3009047265625 0.0348726796875 0.5067928828125 +0.0410533046875 0.041356624999999994 0.0580257421875 0.8595647734375 +0.05476184375 0.7905186171875 0.0974091640625 0.057310382812500005 +0.115795109375 0.059427125 0.008346453125 0.816431265625 +0.469187 0.1370895 0.227569 0.16615449999999998 + +>tree0.2_335_CGTTTCTYMT +0.244170625 0.565189125 0.13818037500000002 0.052459875 +0.13786178125 0.1179246875 0.7084336874999999 0.0357794375 +0.05137965625 0.0254384375 0.02243409375 0.90074790625 +0.02056271875 0.0638440625 0.033844437500000005 0.88174871875 +0.11341525 0.1239791875 0.0028172500000000003 0.75978875 +0.04669859375 0.8915689687499999 0.05069021875 0.0110423125 +0.2615025 0.03746 0.00730528125 0.69373253125 +0.0536121875 0.50999596875 0.04107846875 0.39531321875 +0.4043013125 0.403222 0.1278025625 0.06467421875 +0.0181365 0.001738 0.0029315 0.9771945 + +>tree0.2_336_TTNGGAAACNNY +0.00325 0.06559803125 0.13003109375 0.8011208750000001 +0.18147652734375003 0.23872488671875 0.0778485546875 0.50201249609375 +0.07909175949096679 0.2983468368835449 0.3273030607910157 0.29525844039916993 +0.2862268440246582 0.0797611760559082 0.5726574233398438 0.06135453186035157 +0.054152141113281246 0.024549872009277343 0.8799975173950195 0.04129846813964844 +0.813925267944336 0.03839588873291015 0.08852330480957031 0.05916719738769532 +0.8509376270141601 0.04032877304077148 0.05389624234008789 0.05483741064453126 +0.7016139482727051 0.15169175543212893 0.10042048159790036 0.0462738353881836 +0.1043950541381836 0.7603059207153321 0.0480476083984375 0.087250451171875 +0.12169564382934572 0.2786493748779297 0.33517890234375003 0.26449169943237305 +0.15701331604003907 0.32822749627685543 0.376106508972168 0.13865277868652345 +0.06141961376953125 0.49687783789062506 0.062424120605468744 0.37927835693359374 + +>tree0.2_337_NAATTTRYAWR +0.3770295 0.35011175 0.0291215 0.24373725 +0.7095511875 0.2262558125 0.025702 0.038491 +0.88405238671875 0.0466854765625 0.014453431640625 0.0548084453125 +0.0590788857421875 0.048818949218750005 0.01587253466796875 0.8762296704101562 +0.04618191015625 0.058166859375 0.03657299609375 0.8590780688476563 +0.16178171240234376 0.0232558037109375 0.0195657861328125 0.7953969365234375 +0.4709197250976562 0.110447630859375 0.38246493505859375 0.036167486816406254 +0.06395518847656251 0.5191120297851562 0.02738068212890625 0.38955208300781247 +0.8928227182617187 0.052189375488281245 0.017631412109375 0.037356223632812505 +0.475622453125 0.034328209960937495 0.08428754248046876 0.40576182470703126 +0.416265345703125 0.0756941162109375 0.3407249951171875 0.16731605859374998 + +>tree0.2_338_NNNNATAAAMAA +0.15330575000000002 0.328507125 0.33889900000000006 0.17928824999999998 +0.3581733828125 0.2003195625 0.22393067578125 0.21757656640625 +0.370390146484375 0.24306927539062495 0.342648462890625 0.0438921171875 +0.26628285791015627 0.3014151337890625 0.22640586962890624 0.205880271484375 +0.7784544511718751 0.01697333935546875 0.15742055859375004 0.0471509267578125 +0.10591457763671876 0.08171979736328125 0.15904441430664062 0.6533257961425781 +0.8542674680284261 0.02034378837108612 0.08691996338999272 0.038468666778564455 +0.7706477680467962 0.11589028457933664 0.03681948499214649 0.07664232367736101 +0.8750912474883795 0.042786678213953974 0.04323366420555115 0.03888834853649139 +0.5472768945474028 0.30781337180668117 0.06470103354430198 0.08020866728156804 +0.8067686693338751 0.07506277867507934 0.0799895710902214 0.038163634398460385 +0.6825456763000488 0.0689003752000332 0.1618496759135723 0.086703987008214 + +>tree0.2_339_TTWTAWAWANA +0.1111279892578125 0.105220490234375 0.0878721279296875 0.6957792353515625 +0.24056894165039064 0.03929851269531251 0.038384395751953126 0.6817480842285156 +0.32770278100585937 0.1420209716796875 0.0423180029296875 0.4879582268066406 +0.10441727404022216 0.01207719480895996 0.0194663450050354 0.8640392396392822 +0.688733016658783 0.05579084190368652 0.0425707075881958 0.212905398891449 +0.47689461552047735 0.030137534854888917 0.02975455130386352 0.46321334574508666 +0.9390634766616822 0.01947857720565796 0.00960140333557129 0.03185656799316406 +0.575500311504364 0.048907865253448486 0.017498652626037597 0.3580932396354676 +0.8489422457008362 0.07821524473190308 0.018380905006408692 0.05444600965881348 +0.15107263662719728 0.16694273586654662 0.20072480032348633 0.4812598400154114 +0.8471364760742187 0.06268688625717163 0.0178998537902832 0.07227669012832641 + +>tree0.2_340_SAANCAAAWGRA +0 0.623803 0.376197 0 +0.873750328125 0.0704491484375 0.0089795 0.046820953125 +0.6043129882812501 0.024576455078125 0.1654399921875 0.205529970703125 +0.3497852666015625 0.034471993164062506 0.37854722363281246 0.23719545996093755 +0.09418019140625 0.5613218876953125 0.13628211914062502 0.20821699609375 +0.8239516162109375 0.12606083105468752 0.026773994140625 0.0232135986328125 +0.8300626757812499 0.0451528095703125 0.0877206337890625 0.0370640595703125 +0.727335955078125 0.115870611328125 0.0681498271484375 0.08864369042968752 +0.41487529882812496 0.03363341308593751 0.1520843212890625 0.39942266015625 +0.0717522998046875 0.0495060615234375 0.8454935341796874 0.033248024414062494 +0.48059932421875 0.04131570507812501 0.44941971875 0.0286650908203125 +0.6220233486328125 0.12094478515625 0.1452006484375 0.111831236328125 + +>tree0.2_341_TRGAYAGATRGAT +0.158 0.015 0.1865 0.6405000000000001 +0.50125 0.0027500000000000003 0.35475 0.14125 +0.0935 0.0675 0.81325 0.02575 +0.821 0.04975 0.0915 0.03775 +0.107 0.38275 0.07050000000000001 0.43975 +0.6467499999999999 0.01025 0.318 0.025 +0.233 0.075 0.6755 0.0165 +0.9705 0.006999999999999999 0.003 0.0195 +0.09125 0.0455 0.1145 0.74875 +0.57725 0.0035 0.317 0.10225 +0.10875 0.04625 0.8440000000000001 0.001 +0.77925 0.084 0.02825 0.1085 +0.001 0.081 0.052 0.866 + +>tree0.2_342_CNSTYTYTNTCNC +0.04908233276367188 0.8005397797851562 0.06646082775878906 0.08391732177734376 +0.2000477481384277 0.26624511746215823 0.10177891836547852 0.43192815655517575 +0.03690564463806153 0.378613135848999 0.3949060098571778 0.1895752398071289 +0.09432660497283936 0.10839896450042724 0.1771803422241211 0.620094037979126 +0.009418397613525389 0.6128574249954224 0.049262291748046874 0.3284618657455445 +0.020151948081970215 0.06247717250061035 0.03126620520782471 0.8861046469192504 +0.028773545600891112 0.3758965810852051 0.09347378556823732 0.5018561759414673 +0.019738870727539062 0.0980793565673828 0.02832954573059082 0.8538521964874267 +0.25866315334320067 0.25245540932464594 0.41501423231506346 0.07383597369384765 +0.051297399925231926 0.08019170559692382 0.04583454676055908 0.8226763346710206 +0.14315094352722169 0.6411857749633788 0.10353313627624512 0.11213005307769776 +0.10943753085327149 0.18391308615112303 0.47451679949951175 0.23188254846191408 +0.029234375 0.793015625 0.108015625 0.069734375 + +>tree0.2_343_GGNWAATTWN +0.06970676858520508 0.04661266556167602 0.7734688234481811 0.11021184004592896 +0.140254095662117 0.09755417576956749 0.6935735722510814 0.068618164529562 +0.2628050133070946 0.23479558558678623 0.30186525844419 0.2005106161339283 +0.47263418718492983 0.06575600731813908 0.06236454139947891 0.3992453155084848 +0.7516607329629659 0.133410354706645 0.0826209670058489 0.03230784482216835 +0.6496641807402372 0.0656966412167549 0.20487688718640804 0.07976237109136582 +0.057459526540040974 0.04629206747746467 0.02260620324420929 0.8736423284983634 +0.05163256382060051 0.0646281223782301 0.200811956274867 0.6829272697395087 +0.3543679871768951 0.039343019715070725 0.0983379518095255 0.5079510866695642 +0.08126432360720635 0.4513915435152054 0.2864924533774853 0.18085167906308175 + +>tree0.2_344_MMTTAGTCAC +0.483926 0.435301 0 0.0807735 +0.48237725 0.299999 0.1297645 0.08785899999999999 +0.22154025 0.0013045 0.21913625 0.558019 +0.04910775 0.06186025 0.00640125 0.8826305000000001 +0.961988 0.0026645 0.02992525 0.005422 +0.0266285 0.25567525 0.67268475 0.045012 +0.0351775 0.10401375000000002 0.01648775 0.8443215 +0.03779275 0.9123665 0.031875 0.0179655 +0.98218475 0.0125235 0 0.00529175 +0 0.893261 0.098424 0.008315 + +>tree0.2_345_GGMTGASTMA +0.028025625 0.019177874999999997 0.691399375 0.261397125 +0.0131823125 0.0441594375 0.8495990625000001 0.09305925 +0.43512575 0.367748375 0.18679925000000003 0.0103266875 +0.028357 0.03011575 0.0178204375 0.9237066875 +0.02739725 0.014647 0.950838125 0.007117625 +0.8414910625 0.116077375 0.026863937499999997 0.015567625 +0.0354621875 0.4193505 0.5074934375 0.0376936875 +0.061520624999999995 0.0418914375 0.031052999999999997 0.8655349375 +0.3319121875 0.549311 0.0468336875 0.071943375 +0.871302625 0.059946875 0.0063523749999999995 0.062398125 + +>tree0.2_346_TRNATMYACC +0.03023159765625 0.20969868359375 0.0693363671875 0.69073334765625 +0.3934100546875 0.109848484375 0.41778270117187494 0.078958685546875 +0.09234393583679198 0.20516474353027345 0.4593929446411133 0.24309837573242188 +0.6666704042205811 0.15598664665222167 0.06188540602111817 0.11544182525634764 +0.1197888501739502 0.17415626820373536 0.16852687609863282 0.5375943836364746 +0.28565206668090815 0.5660514957580566 0.05034948126220703 0.09794696368408204 +0.025103474395751953 0.36489747303771974 0.024968947250366212 0.5850301896362304 +0.7249657020416259 0.08883022059631349 0.10345393519592286 0.08278156526184083 +0.03903960623168945 0.8706484201507568 0.03191509358215332 0.05839695674133301 +0.04114269741821289 0.8860203030700684 0.029839894866943367 0.042997227264404296 + +>tree0.2_347_GGGKGTGTACA +0.115 0.008 0.848 0.029 +0.090061125 0.0307445 0.62336975 0.2558245 +0.0825533125 0.023961999999999997 0.84773128125 0.04575340625 +0.12865684375 0.0428236875 0.41945675 0.40906259375 +0.20956028125 0.0114649375 0.7237205 0.055254156250000006 +0.04494496875 0.02214334375 0.09247296875 0.8404386875000001 +0.04428696875 0.08363118750000001 0.81074996875 0.0613319375 +0.01724184375 0.0727269375 0.03482553125 0.8752054062500001 +0.8297541562499999 0.04866196874999999 0.0652898125 0.05629409375 +0.042046781250000005 0.88365678125 0.0252971875 0.04899925 +0.8731385 0.07548387499999998 0.0257205 0.025657 + +>tree0.2_348_TACACSCNCYCG +0 0 0.138485 0.861515 +0.6996370000000001 0.13879475 0.033173999999999995 0.12839425 +0.00228025 0.90857225 0.0714075 0.01774 +0.90842775 0.023972250000000004 0.0402215 0.02737875 +0.00685875 0.9460015 0.0385895 0.008550249999999999 +0.04270375 0.5450952499999999 0.31666174999999996 0.0955395 +0.03819975 0.56846175 0.2405465 0.15279175 +0.45989899999999995 0.0420205 0.2830825 0.21499775 +0.02298775 0.9365985 0.0226415 0.017772 +0.0097375 0.4513015 0.04707725 0.49188325 +0.011925 0.9353845 0.013884 0.0388065 +0 0 0.9597745 0.0402255 + +>tree0.2_349_MCATCACAWAG +0.4985 0.5005 0.0005 0.0005 +0.256976078125 0.709120375 0.0154411953125 0.0184622890625 +0.8773092788085938 0.088081296875 0.01775006201171875 0.0168594638671875 +0.041593134765625 0.10441846240234376 0.01664595654296875 0.8373424101562499 +0.10379690576171874 0.8428876796875 0.02412761181640625 0.029187896484375 +0.9170575341796876 0.030815481933593753 0.031595486328125 0.020531560058593752 +0.00716770703125 0.8431357924804688 0.142518259765625 0.0071780537109375 +0.84324871484375 0.0364684365234375 0.10952408203125 0.010758634765625 +0.5626040786132812 0.0125587529296875 0.05117606005859375 0.3736610620117187 +0.7783882036132812 0.1843425458984375 0.02303996533203125 0.01422935546875 +0.02516741015625 0.02340331640625 0.8999332460937499 0.0514959482421875 + +>tree0.2_350_ANAACAKAC +0.799259375 0.07730687500000001 0.046257875 0.07717575 +0.22252415624999997 0.4964750625 0.22167815625 0.05932275 +0.92224 0.03141653125 0.01825378125 0.0280895625 +0.75299353125 0.0372689375 0.08381374999999999 0.12592375 +0.19120965624999997 0.638882625 0.12378971875 0.0461179375 +0.78183990625 0.009659875 0.18030346875 0.028196875 +0.05730496875 0.05953028125 0.46210325 0.421061875 +0.8982912187500001 0.03444884375 0.04638525 0.0208749375 +0.050150875 0.5862759375 0.26024362500000003 0.10332965625 + +>tree0.2_351_AAMYACRTAC +0.679161 0.26207 0.011789 0.046981 +0.773319 0.04193475 0.051296249999999995 0.133450125 +0.35566825 0.457936875 0.12815625 0.0582385 +0.05413 0.486317625 0.01116825 0.4483845 +0.93343925 0.00961125 0.014042000000000002 0.042907249999999994 +0.052192125 0.9005017500000001 0.035696375 0.0116095 +0.489148625 0.0410455 0.291172125 0.17863337499999998 +0.111147875 0.21078525 0.04510375 0.632963375 +0.8293874999999999 0.0220365 0.120637 0.027939375 +0.04275825 0.714842125 0.044802875 0.19759675 + +>tree0.2_352_TRAAGAYATWCC +0.0638467265625 0.0949407421875 0.059386875000000006 0.7818256171875 +0.3512554609375 0.00329825390625 0.63925092578125 0.0061954140625 +0.8608013535156249 0.0419731484375 0.05585783203125 0.041367814453125 +0.833101029296875 0.06693416015625 0.074570771484375 0.0253940625 +0.022755189453125 0.021651716796875 0.925444400390625 0.030148734375 +0.6956328320312499 0.129786923828125 0.138074958984375 0.03650527734375 +0.12307346875 0.34019935742187496 0.073765513671875 0.46296166015625 +0.675912767578125 0.06638123046875 0.0986676875 0.15928821875000002 +0.031674876953125 0.03667621484375 0.023542798828125003 0.9081062363281248 +0.287490259765625 0.051391822265625 0.092334392578125 0.5687835234374999 +0.01 0.643 0.197 0.15 +0.001 0.997 0.001 0.001 + +>tree0.2_353_AAWYCCYYCG +0.715 0.001 0.005 0.279 +0.997 0.001 0.001 0.001 +0.3175 0.156 0.0435 0.483 +0.146 0.35950000000000004 0.001 0.4935 +0.035 0.565 0.153 0.247 +0.001 0.964 0.001 0.034 +0.001 0.454 0.001 0.544 +0.025 0.32799999999999996 0.0805 0.5665 +0.001 0.7464999999999999 0.059 0.1935 +0.001 0.134 0.724 0.1405 + +>tree0.2_354_AAACGKTTNY +0.54325 0.08750000000000001 0.189 0.18025 +0.7383110156249999 0.07266165625 0.05540884375 0.13366553125 +0.765741 0.032486390625 0.0729491875 0.128792125 +0.027895125 0.90337765625 0.020954671874999997 0.047772546875 +0.17918965624999997 0.055619859375 0.749628421875 0.0155619375 +0.041677671875 0.024615140625 0.40723096875 0.526476234375 +0.0192231875 0.06342196875 0.14400278125 0.773352359375 +0.19397421875 0.06848026562500001 0.00810425 0.7294411875 +0.4870279375 0.104141109375 0.162893796875 0.245999703125 +0.04782925 0.534941875 0.048184624999999995 0.36904425 + +>tree0.2_355_CNAAAGSTTTR +0.119904125 0.63994071875 0.1793393125 0.060815875 +0.42916255078125 0.087929890625 0.31419475 0.16883787109375 +0.67127983984375 0.0517365703125 0.24699103515625 0.0300550546875 +0.64237292578125 0.03560634375 0.31201713281250004 0.01000361328125 +0.85628634765625 0.02474819140625 0.04449519921875 0.07447040429687499 +0.280836873046875 0.091129951171875 0.5802366328124999 0.0477966953125 +0.05936631835937499 0.3411288984375 0.543732859375 0.05577195703125 +0.039929224609374994 0.13846248046875 0.03351975390625 0.788088515625 +0.07959912499999999 0.06286875390625 0.02995752734375 0.827574619140625 +0.045448419921875 0.043592115234375 0.0062401582031249994 0.9047193496093752 +0.50647400390625 0.1842936796875 0.2640106875 0.04522137890625 + +>tree0.2_356_NARCACKKT +0.474349359375 0.1625433359375 0.17341176953125 0.18969556640625 +0.86865226953125 0.02321695703125 0.05624728125 0.051883468749999995 +0.5528124807128906 0.05453943090820312 0.3377511020507813 0.054897041015624995 +0.04881024226379394 0.8081320981292724 0.07849567515563965 0.06456194247436524 +0.8793634471893311 0.016868824523925782 0.07123185223388673 0.03253585009765625 +0.021974995361328124 0.6499276975250244 0.24747275010681152 0.08062455577087402 +0.09414039625549316 0.029944928298950197 0.29857649964904787 0.5773382341156006 +0.038524053604125974 0.10235011097717284 0.4140137289123535 0.44511225900268553 +0.04375779100036621 0.030790119567871095 0.023553828674316404 0.9018982153778076 + +>tree0.2_357_RACSGGRTT +0.4003305 0.0504535 0.5117095 0.0375065 +0.8304615 0.041356 0.0183705 0.109812 +0.013672 0.947772 0.01224675 0.02630925 +0.02026175 0.5326770000000001 0.39092425 0.056137 +0.017385499999999998 0.16062225 0.81246975 0.009523 +0.03085075 0.01517125 0.845828 0.10815 +0.472818 0.07379175 0.38291975 0.07047075 +0.03891825 0.0156975 0.139846 0.80553825 +0.01770225 0.05517025 0.01558625 0.911541 + +>tree0.2_358_RGCYCCYTT +0.524802 0.0139865 0.4607115 0.0005 +0.24555725 0.214 0.5265105 0.01393225 +0.11225 0.66025 0.20125 0.02625 +0.10975 0.46803625 0.017702250000000003 0.4050115 +0.0063282500000000005 0.62522425 0.1473685 0.221079 +0.00985525 0.61706375 0.221411 0.15166975 +0.19675 0.35131924999999997 0.004838500000000001 0.44709225 +0.14823525 0.00201475 0.00075 0.849 +0.0005 0.00961 0.0816125 0.9082775 + +>tree0.2_359_CAGCGCGMKCAG +0.053 0.8825000000000001 0.0395 0.025 +0.62015 0.2515 0.0905 0.03785 +0.1180435 0.0005 0.8809564999999999 0.0005 +0.213421 0.755612 0.02278 0.008187 +0.002052 0.0005 0.984948 0.0125 +0.0119745 0.9578585 0.016769 0.013398 +0.0005 0.043881 0.955119 0.0005 +0.5901775 0.3433765 0.0218405 0.0446055 +0.027103 0.0005 0.4009075 0.5714895 +0.0005 0.8756555 0.0183445 0.1055 +0.997 0.001 0.001 0.001 +0.053 0.053 0.803 0.091 + +>tree0.2_360_CCKCRTGATCM +0.14650025 0.7322055000000001 0.013980749999999998 0.10731325 +0.052189484375 0.93319847265625 0.00747838671875 0.0071336015625 +0.05156743945312499 0.032060365234375 0.56708731640625 0.34928468945312496 +0.0048260859375 0.898652130859375 0.008490716796875 0.08803099609375001 +0.45947352539062497 0.004657599609375 0.5262969921874999 0.00957190234375 +0.00931515234375 0.222260064453125 0.06477658007812499 0.703647857421875 +0.082906375 0.100986197265625 0.793615138671875 0.022492291015625 +0.883293607421875 0.01704440234375 0.03988488671875 0.059777134765625 +0.028416982421875 0.047558187499999995 0.034174931640624996 0.889849763671875 +0.012084597656249998 0.96111699609375 0.02007619140625 0.00672238671875 +0.4559525 0.3419645 0.026268874999999997 0.1758141875 + +>tree0.2_361_ASNGCTTGMAC +0.99425 0.00125 0.0015 0.003 +0.02419175 0.588069984375 0.32084301562500006 0.06689525 +0.3155453475952148 0.3901616365966797 0.18847934692382812 0.10581365545654296 +0.08185845556640625 0.160329546875 0.610753662536621 0.14705837121582033 +0.02615632080078125 0.9303442709350588 0.01447494384765625 0.02902450787353516 +0.031004652160644533 0.06433782458496093 0.14916536181640624 0.755492172668457 +0.02049908166503906 0.019278896240234374 0.05924377752685547 0.9009783102416992 +0.02546963507080078 0.08071847210693359 0.864945033569336 0.028866856323242183 +0.3826134325561523 0.4635617355957031 0.027598953552246095 0.12622582800292967 +0.6525180497436524 0.01912666668701172 0.2997812040405273 0.02857411199951172 +0.029656671386718743 0.8295356812744141 0.028323855224609375 0.11248382092285156 + +>tree0.2_362_ACTCGTGKG +0.6621375 0.270109 0.042061 0.0256925 +0.043113 0.806143 0.134548 0.016196000000000002 +0.0033005 0.1782105 0.0037595 0.8147295 +0.0005 0.9595325 0.0394675 0.0005 +0.0847615 0.03675 0.8779885000000001 0.0005 +0.0005 0.001412 0.0324815 0.9656065 +0.1174625 0.0038805 0.8765375 0.0021195 +0.118802 0.0005 0.325357 0.5553410000000001 +0.220081 0.015509 0.749431 0.014979 + +>tree0.2_363_AYCAWGAKRN +0.6329073125 0.2247493125 0.1142996875 0.0280441875 +0.109366484375 0.26524851562499996 0.12032546875 0.505059328125 +0.01542609765625 0.9081394189453124 0.03844519775390625 0.037989301757812496 +0.9047222905273438 0.0406982744140625 0.03687350146484375 0.017705894531250002 +0.37380423046875005 0.11401998193359376 0.06599194091796876 0.44618399169921874 +0.02741978271484375 0.04709303417968749 0.916859697265625 0.00862776025390625 +0.8040137299804688 0.022048942871093748 0.1307703193359375 0.04316699609375001 +0.039618073730468745 0.09769816748046876 0.4561295146484375 0.406554396484375 +0.3473863442382813 0.01469316015625 0.5907624086914063 0.04715810205078125 +0.227442634765625 0.0570241015625 0.4390006796875 0.276532611328125 + +>tree0.2_364_GGCASGAGA +0.01600325 0.03518 0.935141 0.01367625 +0.1143755 0.2480340625 0.6064372499999999 0.0311529375 +0.0297074609375 0.926415033203125 0.0227620625 0.021115434570312498 +0.9508197529296876 0.0141472294921875 0.016412744140625 0.01862032421875 +0.01550722509765625 0.4259451953125 0.5089523081054688 0.049595208984375 +0.026132523925781255 0.021613312988281248 0.878050638671875 0.07420355810546875 +0.5310550068359375 0.018582856445312497 0.2331021123046875 0.21725974609375 +0.02541603515625 0.008040970703125 0.9274322758789062 0.03911073779296875 +0.7907030771484375 0.05201594335937501 0.1285761962890625 0.028704969238281253 + +>tree0.2_365_AMGTGAGCT +0.974605 0.025395 0 0 +0.275837875 0.550529625 0.1458905 0.027741875 +0.06205220568847656 0.21827229443359375 0.7191022580566406 0.0005732139892578125 +0.04738190551757813 0.014979306762695313 0.0107814267578125 0.926857466430664 +0.005118820068359375 0.017231264282226565 0.9723444744873048 0.005305640625 +0.9167412302246094 0.012384549560546876 0.026243142333984375 0.04463092419433594 +0.03243886755371094 0.03382851196289062 0.8709292077636719 0.06280346142578126 +0.07251305798339844 0.7592188388671874 0.0764409775390625 0.09182742858886717 +0.0446115224609375 0.1102181942138672 0.1210720469970703 0.7240982674560547 + +>tree0.2_366_CAGCCGAGGN +0.06381 0.93619 0 0 +0.939803 0.010742 0.035544 0.013911 +0 0.254473 0.745527 0 +0.095236 0.820781 0.002521 0.081462 +0 0.871717 0.128283 0 +0.308549 0 0.630701 0.06075 +0.866817 0.028716 0.093132 0.011335 +0 0.017696 0.982304 0 +0.01548 0.189251 0.791141 0.004127 +0.409052 0.323929 0 0.267019 + +>tree0.2_367_CACGGGAGS +0.099706 0.888789 0 0.011506 +0.8851985 0 0.014358 0.1004435 +0 0.966048 0 0.033952 +0.060139 0.078017 0.8040970000000001 0.057747 +0 0.17238250000000002 0.8106180000000001 0.017 +0.0358265 0.0483595 0.7720184999999999 0.1437965 +0.974825 0.005512 0 0.019663 +0.008856 0.0369545 0.949039 0.0051505 +0.106426 0.32989949999999996 0.537941 0.0257335 + +>tree0.2_368_WNSSCCGAGTT +0.462828 0 0 0.537172 +0.376644875 0.32970362499999994 0.144092875 0.1495585 +0.0446749375 0.45855512500000006 0.47049975 0.026270125 +0.1067521875 0.28988512499999997 0.5155656875 0.0877971875 +0.086230125 0.8169111874999999 0.032408624999999996 0.064450125 +0.0183498125 0.9206756875 0.0320209375 0.0289535625 +0.02974 0.0090085 0.96095125 0.00030000000000000003 +0.856512375 0.059040625 0.0410835625 0.0433635625 +0.00025 0.040978375 0.9447966875 0.0139749375 +0.046606625 0.251069375 0.1534230625 0.548900875 +0.118804 0.05306875 0.1202695 0.70785825 + +>tree0.2_369_CACCWCMGSCCT +0.0759302763671875 0.8128303134765624 0.0479199140625 0.06331936572265626 +0.8134670766601562 0.01753443310546875 0.08728179687500001 0.08171669506835938 +0.020237572265625 0.8774734912109374 0.041941695068359375 0.06034738989257813 +0.10640406225585938 0.8197460205078125 0.036598343505859374 0.0372515927734375 +0.31471213574218754 0.11595183447265624 0.05588181127929688 0.513454201171875 +0.00881860107421875 0.7613241135253906 0.03941152783203125 0.1904457724609375 +0.416263111328125 0.4097399936523437 0.12044867016601564 0.05354822290039062 +0.06270695947265625 0.03080392822265625 0.8314242980957032 0.07506458984375 +0.10834991943359376 0.5248825419921875 0.32570271630859376 0.041064865234375 +0.0512301953125 0.6174336328125 0.30507340234374997 0.026262894531249997 +0.0508785 0.8873945 0.03640725 0.02532025 +0.058 0.15987175 0.120222 0.6619062499999999 + +>tree0.2_370_SNNKCCCGA +0.007065500000000001 0.4019775 0.590457 0.0005 +0.212073 0.3200425 0.08487499999999999 0.3832595 +0.25411612499999997 0.481260375 0.132125 0.1324985 +0.043060625 0.140249625 0.50831475 0.30837499999999995 +0.151901125 0.811248625 0.025185125000000003 0.01166525 +0.035436125 0.712066875 0.195621875 0.056875 +0.024125 0.974125 0.000875 0.000875 +0.015375 0.034125 0.949625 0.000875 +0.85458075 0.00075 0.04975 0.09491925 + +>tree0.2_371_CGGGGGGGG +0.001 0.898 0.1 0.001 +0.0175 0.001 0.9805 0.001 +0.11 0.001 0.77 0.119 +0.1915 0.001 0.7265 0.081 +0.0495 0.0765 0.873 0.001 +0.0585 0.096 0.8445 0.001 +0.001 0.1175 0.8805000000000001 0.001 +0.001 0.046 0.952 0.001 +0.05 0.001 0.948 0.001 + +>tree0.2_372_ACGCCGWCCGY +0.73411825 0 0.02657475 0.239307 +0 0.993881546875 0.005206375 0.000912078125 +0.08101546093749999 0.21518909375 0.697912171875 0.0058832421875 +0.06721503124999999 0.8179470625 0.0773859921875 0.0374517890625 +0.0324868359375 0.86115925 0.071544140625 0.0348097734375 +0.0379477109375 0.2424296171875 0.589820375 0.129802515625 +0.31866098437499996 0.000685 0.0868932890625 0.5937609375 +0.009773015625 0.9525661171875 0.0362468359375 0.001414046875 +0.0236086953125 0.8401464609375 0.0291105234375 0.1071341953125 +0.06390482812500001 0.1638058125 0.528154328125 0.2441353125 +0.0021665 0.6584665000000001 0.003101375 0.336265625 + +>tree0.2_373_CCTGCTTCGGC +0.0005 0.9823895 0.0166105 0.0005 +0.0005 0.981718 0.017282 0.0005 +0.0068070000000000006 0.106259 0.0202715 0.8666625 +0.0108215 0.006213 0.9593135 0.0236515 +0.0077915 0.9624865 0.029222 0.0005 +0.0005 0.0071684999999999995 0.0768025 0.915529 +0.0005 0.264109 0.0433975 0.6919935 +0.0176685 0.9501055 0.0005 0.031726000000000004 +0.007745 0.0005 0.9638475 0.0279075 +0.0005 0.055375 0.6358360000000001 0.308289 +0.0005 0.993 0.0005 0.006 + +>tree0.2_374_SCGMGGMMGNG +0.0123475 0.3555565 0.6223810000000001 0.009715 +0.012228890625 0.936742875 0.0394763125 0.011552046875 +0.024758359375 0.0359197734375 0.927326546875 0.011995125 +0.284104716796875 0.5066016191406251 0.0896242890625 0.1196693203125 +0.044706679931640625 0.17118170996093748 0.6334809001464844 0.15059948681640625 +0.05005038427734375 0.07633603247070311 0.778738162109375 0.09484429370117188 +0.3442035793457031 0.5488496857910157 0.048123062744140625 0.05882361450195313 +0.3987443806152344 0.4180364479980469 0.09903422680664062 0.08418497998046875 +0.03596365087890625 0.0662098271484375 0.8823162707519532 0.015510215087890624 +0.244559623046875 0.035494 0.26570776171875 0.4542386018066406 +0.05796800366210937 0.04492312744140625 0.8779629619140625 0.019145415283203127 + +>tree0.2_375_GACGCAGARG +0.080675 0.042704 0.8755285 0.0010925 +0.870279 0.0448845 0.076283 0.008554 +0.262182 0.6372475 0.0233885 0.0771825 +0.0037015 0.0872435 0.856226 0.052829 +0.0200205 0.936462 0.039135 0.0043820000000000005 +0.8433845 0.0371085 0.0737045 0.045803 +0.0039575 0.026785999999999997 0.9676105 0.001646 +0.7089275 0.029244500000000003 0.1343235 0.127505 +0.3189915 0.037919 0.525874 0.117216 +0 0.055147 0.848323 0.09653 + +>tree0.2_376_KCKYTGCG +0.0265 0.01825 0.35350000000000004 0.60175 +0.17475 0.637 0.10275 0.08549999999999999 +0.01175 0.01425 0.6145 0.3595 +0.008125 0.36825 0.025375 0.59825 +0.124875 0.027375000000000003 0.01525 0.8325 +0.0405 0.076375 0.8516250000000001 0.0315 +0.005000000000000001 0.977625 0.016375 0.001 +0.026375000000000003 0.063875 0.8455 0.06425 + +>tree0.2_377_CGCACNGCGT +0.001 0.959 0.001 0.039 +0.033795 0.023969 0.812236 0.13 +0.1855265 0.741237 0.0092245 0.064012 +0.917803 0.0005 0.0507485 0.0309485 +0.13584400000000002 0.615185 0.238 0.010471 +0.265074 0.071061 0.224365 0.4395 +0.04 0.0005 0.959 0.0005 +0.090082 0.897507 0.0005 0.011911 +0.0005 0.016491 0.949381 0.0336285 +0.2690195 0.0005 0.1909785 0.5395015000000001 + +>tree0.2_378_GCGCYSCGSG +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.997 0.001 0.001 +0.02775 0.5461875 0.1215625 0.3045 +0.001 0.521375 0.476625 0.001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 +0.001 0.526375 0.471625 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_379_SGCGCGGAGNG +0.146 0.283 0.53 0.041 +0.09673903125 0.2426735390625 0.5296469453125 0.130940484375 +0.08379406152343749 0.7641507421875 0.017098111328125 0.13495708398437503 +0.07420202734375 0.152387861328125 0.6421526396484376 0.13125748242187502 +0.0206227861328125 0.70821005859375 0.158999982421875 0.11216733203125 +0.015299986328125 0.0449428544921875 0.91369019921875 0.026066820312500003 +0.027310344726562494 0.0174478662109375 0.8878626279296875 0.06737925488281249 +0.6968870869140624 0.20875596191406248 0.051065639648437494 0.04329133203125 +0.0222087666015625 0.033519658203125004 0.9293506513671876 0.0149209208984375 +0.25294308984375 0.23809508203125 0.09849335546875 0.4104530791015625 +0.205908546875 0.141044484375 0.629943625 0.023103328125000003 + +>tree0.2_380_SNGAGCNGCGC +0.04920734375 0.418042671875 0.506651421875 0.0260986875 +0.1757386023864746 0.31442454821777344 0.11874614852905274 0.3910906047058106 +0.006523218078613282 0.10286559297180176 0.8724644699859618 0.018146683471679685 +0.6326571822662354 0.227709670791626 0.025236663681030273 0.114396336227417 +0.031141289306640625 0.04173603977966309 0.918741822418213 0.008380823913574219 +0.09512830990600586 0.6027010610809327 0.24325689739990233 0.05891358964538574 +0.2659843060913086 0.25832249746704106 0.24532489723205567 0.23036813046264648 +0.06940206678771974 0.09396598719787598 0.7040479469604493 0.13258413485717774 +0.17289850701904297 0.6510440748596191 0.09605298641967772 0.08000436239624023 +0.013135455993652343 0.035080861206054685 0.939930349975586 0.011853305267333985 +0.1767104638671875 0.5258331533203124 0.1170948349609375 0.180361435546875 + +>tree0.2_381_GNYCSCNGCGSA +0.07797849999999999 0.17482799999999998 0.62627075 0.1209225 +0.30321300976562504 0.37674894433593753 0.1778254375 0.14221265625 +0.08971923583984376 0.46278560742187497 0.06072562060546875 0.3867695292968749 +0.056561953125 0.7115563593750001 0.09236114501953124 0.13952833154296876 +0.0705406572265625 0.5056906713867187 0.31337386865234373 0.11039499121093747 +0.02120463525390625 0.7703083144531251 0.0670827099609375 0.141404349609375 +0.22859689990234372 0.23711824169921877 0.26317233251953126 0.2706125185546875 +0.02673275048828125 0.027897313964843753 0.7343655209960938 0.21100443359375 +0.0462436318359375 0.9065636684570312 0.027599363769531253 0.01959328662109375 +0.0378605830078125 0.02801414306640625 0.9093825541992188 0.024742754882812495 +0.076124466796875 0.4315968466796875 0.383593025390625 0.10868565332031248 +0.997 0.001 0.001 0.001 + +>tree0.2_382_ACAGCSCAGCGT +0.816145 0 0.183855 0 +0 0.940862 0.059138 0 +0.837723 0.081963 0.042646 0.037668 +0.008815 0 0.991185 0 +0.019234 0.859919 0.11245 0.008397 +0.061076 0.3745 0.542405 0.022019 +0.109648 0.845319 0.042593 0.00244 +0.831181 0.115933 0.043251 0.009636 +0 0.016719 0.981318 0.001963 +0 1 0 0 +0 0.068373 0.931627 0 +0.028526 0.180203 0.091599 0.699673 + +>tree0.2_383_NCGCCGSCNTN +0.1007041953125 0.200661515625 0.34578454687499993 0.3528497734375 +0.052129984394073486 0.8338227946166992 0.08709149613571167 0.026963583332061766 +0.07861229508972167 0.057062312316894535 0.7170870489120483 0.1472382726974487 +0.03155640783691406 0.8877731896820068 0.030321521022796633 0.050348894077301025 +0.11027946382904052 0.7148010372467041 0.09835075371551516 0.07656868101501466 +0.044832830085754394 0.04280239456176758 0.8579793866462707 0.054385436710357664 +0.03269625592803955 0.49266037088012704 0.4110640334320068 0.06357949602508545 +0.0290297080078125 0.9070595547714232 0.04453464923095703 0.019376093406677244 +0.30023412506484987 0.3619128573799133 0.05718961832046508 0.2806634123153686 +0.09643842583084106 0.05716723444366456 0.1217207787437439 0.7246734919166564 +0.03386978955078125 0.3283748193359375 0.3299027138671875 0.30785259521484376 + +>tree0.2_384_CMCNGNCAGCG +0.2012765 0.711209 0.0125735 0.0749415 +0.5466328515625 0.38147740625 0.036624156250000005 0.03526559375 +0.12821099218749998 0.8369108515625 0.0199228671875 0.0149552578125 +0.12515677343749998 0.3678439921875 0.2963834921875 0.2106160546875 +0.0086626484375 0.2989461171875 0.6325425468750001 0.059849015625 +0.267912984375 0.1872317890625 0.458933671875 0.085922234375 +0.01893603125 0.938606765625 0.037814484375 0.004642749999999999 +0.8555241640625 0.0344575234375 0.07542234375 0.0345957265625 +0.0066108203125 0.033557953125 0.93764053125 0.0221909140625 +0.024790609375 0.8940885390625 0.04652153125 0.034599875 +0.04482475 0.0077435 0.83639 0.11104125 + +>tree0.2_385_TAGGCCTCNNW +0.0305 0.1293595 0.011738 0.8284024999999999 +0.8129817390136719 0.06704968798828125 0.0034825288696289066 0.11648604510498048 +0.02614237103271484 0.03560911520385742 0.9243093034973144 0.013939182891845705 +0.05232871517944336 0.02591333744812012 0.9002230414733887 0.021534890991210937 +0.08483130390930177 0.8424877491912841 0.016081793334960938 0.05659940328979493 +0.008278198684692381 0.9054364559020996 0.06069250726318359 0.02559309568786621 +0.11167199638366698 0.00994724122619629 0.022945716598510742 0.8554352898864745 +0.0025647608032226565 0.9330295021209718 0.03538453547668457 0.02902143525695801 +0.4156279842071533 0.09149596905517576 0.2982054468688965 0.19467061787414552 +0.33488833148193364 0.33505242443847655 0.30990655149841306 0.020152803421020507 +0.4190519521484375 0.13360319677734375 0.04706949194335938 0.4002753588867187 + +>tree0.2_386_CCCMGAGTCCGA +0.054308 0.7825070000000001 0.0005 0.162685 +0.28098924999999997 0.6681542500000001 0.010149 0.0407075 +0.00025 0.949591 0.00025 0.049909 +0.3883215 0.5229207499999999 0.0532335 0.035524 +0.2130245 0.01811825 0.76777075 0.00108575 +0.8399924999999999 0.03205625 0.09585575 0.0320955 +0.09123325 0.0291615 0.7935719999999999 0.08603350000000001 +0.0234145 0.03154925 0.02695675 0.9180795 +0.021427 0.90320375 0.00025 0.07511925 +0.008588 0.84842475 0.0155305 0.12745675 +0.228538 0 0.695542 0.075921 +0.837932 0 0.074573 0.087495 + +>tree0.2_387_ACASGACGCCCG +0.5814655 0.1998115 0.0005 0.218223 +0.0078405 0.779668 0.07113 0.1413615 +0.9774485 0.003524 0.018527 0.0005 +0.0005 0.391163 0.595319 0.013018 +0.0005 0.065623 0.804376 0.129501 +0.986429 0.0005 0.0037615 0.0093095 +0.164707 0.7574890000000001 0.049946 0.0278575 +0.0020805 0.01569 0.9510805 0.0311495 +0.0830035 0.8291535 0.070827 0.017016 +0.0625 0.9055495 0.025447 0.006503500000000001 +0.001 0.997 0.001 0.001 +0.001 0.001 0.997 0.001 + +>tree0.2_388_CTGGGCCTCSTKW +0 0.986017 0.01242 0.001562 +0.154469 0.037697 0.112914 0.69492 +0.023713 0.031646 0.914999 0.029641 +0.125304 0.042631 0.632876 0.199189 +0.024686 0.108898 0.841566 0.02485 +0.084698 0.765813 0.023581 0.125907 +0.012495 0.908785 0.031469 0.047251 +0.07098 0.039537 0.184749 0.704734 +0.012828 0.85471 0.109344 0.023118 +0.088819 0.316817 0.565171 0.029193 +0.041418 0.143942 0.056409 0.758232 +0 0.012815 0.629624 0.357561 +0.575177 0 0.066809 0.358014 + +>tree0.2_389_TCACGAGGTCAGGA +0.09184 0.23823 0.137728 0.532201 +0.039739 0.703259 0.243707 0.013295 +0.762148 0.024884 0.092459 0.120509 +0.0652735546875 0.640527265625 0.0813053046875 0.2128938828125 +0.0364080735244751 0.024142320209503177 0.9358117610015868 0.003637773643493653 +0.8362543232460022 0.010935768081665038 0.13034125345993042 0.02246864106750488 +0.048122779937744144 0.0420112781867981 0.8765476915931703 0.03331817662429809 +0.08402256727600098 0.06642890604400635 0.7617363515052795 0.08781219442367554 +0.022012263370513915 0.06779571091842651 0.04953329949188233 0.8606586911735534 +0.11470183103561402 0.6896778754463195 0.1203077129020691 0.07531284848022461 +0.8685660252685548 0.009364460468292236 0.07146868546295165 0.05060039883041381 +0.13837024702835082 0.0334438285522461 0.8183335695037841 0.009852358924865724 +0.04677637511444092 0.01804063212966919 0.8541448179817199 0.08103841400527954 +0.7736617827148438 0.06803361694335938 0.0822073544921875 0.07609711547851562 + +>tree0.2_390_TCGTCGTCRTC +0.042 0.001 0.084 0.873 +0.04322 0.68224425 0.004345750000000001 0.27019 +0.015659375 0.023794875000000004 0.956563125 0.0039825 +0.026974375 0.01471775 0.013977125 0.94433075 +0.0393 0.71857075 0.2265895 0.015539875 +0.281339375 0.1115415 0.586953375 0.020166000000000003 +0.01332975 0.01625275 0.021168625 0.94924875 +0.04994825 0.893038625 0.020787125 0.036226 +0.3472525 0.035079 0.584650875 0.033017625 +0.015603 0.04602625 0.010635625 0.927735 +0.18555925 0.587953 0.0972655 0.12922225 + +>tree0.2_391_AGCYRNGATTAYR +0.8187045 0.053148999999999995 0.049762 0.07838400000000001 +0.12085115625 0.22030759375 0.6292642500000001 0.02957703125 +0.067576345703125 0.6762312480468751 0.140773630859375 0.11535626953125 +0.05274372398579121 0.5159872065798045 0.035290326729238035 0.3959787349964976 +0.5424244401662834 0.02079330135984346 0.418255675657846 0.018526553553424772 +0.20235124879114144 0.0644105432725586 0.37898876673607346 0.35424951462821663 +0.06917747089529969 0.03133384806410968 0.820261144639222 0.07922765606228076 +0.9250531636192836 0.01954919143557176 0.034966454542886466 0.02043119128097594 +0.11015269236195274 0.19987831025450117 0.03360504358165153 0.6563638483735583 +0.03657012694299966 0.20954764591395855 0.1080377762303669 0.6458444875830207 +0.589724788631808 0.07886786838856898 0.29292130656203624 0.03848604735984467 +0.0629459146780949 0.4311986960824448 0.014351954733129592 0.4915032929404807 +0.4325827174270638 0.028827730879280714 0.5195997685527652 0.018989884472928945 + +>tree0.2_392_CAGCATCNTG +0.024828 0.775611 0.052094 0.147467 +0.890107 0.021285 0.068072 0.020535 +0.031836 0.029468 0.917215 0.021482 +0.069222 0.879761 0.004627 0.04639 +0.909061 0.027967 0.024084 0.038888 +0 0.047205 0.022095 0.9307 +0.110667 0.752514 0.051771 0.085047 +0.291856 0.272277 0.413699 0.022168 +0.07568 0.02412 0.000767 0.899433 +0.109753 0.035818 0.82769 0.026739 + +>tree0.2_393_CNCAGMNTSGNA +0.0346025234375 0.8983896132812501 0.030628546875000003 0.0363793125 +0.24388649023437503 0.4548168974609375 0.226945796875 0.07435082031250001 +0.03416176069688797 0.7676250657157898 0.07082338773441316 0.12739372534990312 +0.9040840721831322 0.02978756487560272 0.04084085566997528 0.02528657028722763 +0.03341526097345352 0.10017466815710067 0.7929015467267035 0.07350770700645447 +0.3149494907083511 0.5422511980814934 0.043303216186523434 0.0994960619339943 +0.42195298355150224 0.2541166754479408 0.2882460709061623 0.03568423337936401 +0.19787773113679885 0.03591805342578888 0.04020085142374039 0.7260032682666778 +0.032261538288116454 0.4609917404294014 0.4466432660975456 0.06010334978246688 +0.20376787407541275 0.05068516507339478 0.7119706373882294 0.033576349905967716 +0.29562071877861024 0.2218474462041855 0.11278368183994296 0.3697464560804367 +0.74614049609375 0.0669009140625 0.09970340625 0.08725523046875 + +>tree0.2_394_TGCCATGGAAAC +0.033125 0.107125 0.004750000000000001 0.855 +0.09275 0.056375 0.62075 0.230375 +0.00275 0.7585 0.1295 0.10925 +0.005125000000000001 0.8755 0.001 0.118375 +0.6966249999999999 0.08225 0.006999999999999999 0.214 +0.25025 0.006999999999999999 0.146625 0.596125 +0.141625 0.001 0.84375 0.013625000000000002 +0.06875 0.016375 0.912 0.002875 +0.611875 0.2735 0.03625 0.07825 +0.910375 0.0027500000000000003 0.062 0.024875 +0.962875 0.001875 0.023999999999999997 0.01125 +0.085875 0.7693749999999999 0.041 0.10375 + +>tree0.2_395_TGCCTAGKRG +0.0298714375 0.07870525 0.164343875 0.7270795 +0.08364371875 0.0357445 0.84054153125 0.04007025 +0.02187355078125 0.672800921875 0.1454411875 0.15988437109375 +0.08306619921875 0.684809625 0.1111571640625 0.12096688671875 +0.0247256640625 0.07090108984375 0.01235241015625 0.892020875 +0.6159951406249999 0.02485528125 0.21673852734375 0.14241118749999998 +0.02770796484375 0.10195690234375 0.83462326953125 0.03571184765625 +0.0296044921875 0.0358782578125 0.4975831171875 0.43693412109375 +0.361729859375 0.031655238281250005 0.5572081875 0.04940670312499999 +0.18122437890625 0.039043937499999994 0.759232734375 0.02049919921875 + +>tree0.2_396_AYTTCAKAGGGTG +0.810027 0.00646 0.150827 0.032686 +0.18882325 0.27313425 0.00296175 0.53508025 +0.041965875 0.053269375 0.058843187500000005 0.8459215 +0.0185940625 0.0979345 0.08564962500000001 0.7978218749999999 +0.001962875 0.8949021875000001 0.012379125 0.0907558125 +0.8920550625000001 0.049494375 0.046017 0.012433687500000002 +0.0524920625 0.1071101875 0.4562006875 0.384697 +0.64920675 0.051113375 0.2380575 0.061622437499999995 +0.1555605625 0.0146165625 0.803097 0.0267259375 +0.1305605 0.0264075625 0.833841125 0.0091909375 +0.147979 0.21756125 0.628448 0.005512 +0.116 0.01 0.001 0.873 +0.251 0.001 0.681 0.067 + +>tree0.2_397_GACCATGTNAGAM +0.109668 0.048187 0.838468 0.003677 +0.861701671875 0.004888546875 0.063456296875 0.0699533203125 +0.27541984375 0.5960639453125001 0.101545439453125 0.0269708515625 +0.14670830871582033 0.6652201904296875 0.1349704779663086 0.05310117590332031 +0.766554112487793 0.13661997106933596 0.04505342327880859 0.05177257800292968 +0.018692751098632818 0.12115543591308596 0.04284254003906251 0.8173093914794921 +0.2172102536010743 0.1661065213623047 0.5881960509643555 0.028487266967773435 +0.1004913158569336 0.039953608947753905 0.06027434020996093 0.7992807753295899 +0.2472914349975586 0.23029516253662105 0.4718538731689453 0.05055959783935547 +0.7213854811401367 0.023593817810058593 0.22319863610839843 0.031821816040039065 +0.1053707823486328 0.0801611724243164 0.7081586751098633 0.10630926934814453 +0.7451028001708984 0.052073087402343746 0.1580873067626953 0.04473692138671875 +0.42855968750000006 0.3608948749999999 0.10692659375 0.10361925 + +>tree0.2_398_TNSCCYNAGGSN +0.2265 0.21600000000000005 0.0435 0.5135000000000001 +0.27149999999999996 0.04 0.299 0.39 +0.0015 0.4225 0.5475 0.0285 +0.0015 0.994 0.002 0.0025 +0.0015 0.9135 0.001 0.084 +0.1465 0.2865 0.0015 0.5655 +0.192 0.3095 0.3285 0.16999999999999998 +0.6565000000000001 0.001 0.2995 0.043 +0.2085 0.001 0.7895 0.001 +0.002 0.001 0.996 0.001 +0.08299999999999999 0.5035000000000001 0.4115 0.0025 +0.3875 0.31 0.0085 0.2935 + +>tree0.2_399_YYWCCCRMGGTCA +0.050758 0.320509 0.07846 0.550274 +0 0.392362 0 0.607638 +0.313713 0.065204 0.030044 0.591039 +0.011602 0.785804 0.06457 0.138025 +0.027197 0.907955 0.029939 0.034909 +0.016842 0.96927 0.007535 0.006352 +0.631175 0.039021 0.328041 0.001762 +0.462031 0.31117 0.186448 0.04035 +0.079583 0.027426 0.855957 0.037034 +0.003405 0.028311 0.925826 0.042458 +0.02457 0.221155 0.022802 0.731472 +0 0.945427 0.048172 0.006401 +0.87699 0.089358 0.012794 0.020857 + +>tree0.2_400_MACCYNGGGCAG +0.483836 0.516164 0 0 +0.8081910000000001 0.012718 0.15326900000000002 0.0258225 +0.044297 0.679396 0.27630675 0 +0.090985 0.7992235000000001 0.04839625 0.061395000000000005 +0.0167475 0.32550225 0.06542 0.59232975 +0.0857325 0.39015175 0.195313 0.32880275000000003 +0.0711625 0.0067025 0.90422325 0.017911 +0.01161025 0.00873125 0.9636435 0.016014999999999998 +0.05562374999999999 0.12213825 0.81580075 0.00643725 +0.04715275 0.90513075 0.020066 0.027649749999999997 +0.956879 0.005311 0.01081 0.027 +0.024226 0 0.975774 0 + +>tree0.2_401_GCACCCACTGTCC +0.001 0.001 0.995 0.003 +0.034 0.8895 0.0165 0.06 +0.742 0.0155 0.052 0.1905 +0.0175 0.8915 0.041 0.05 +0.0575 0.8845000000000001 0.0225 0.035500000000000004 +0.1875 0.776 0.014 0.0225 +0.895 0.047 0.0455 0.0125 +0.2535 0.7225 0.014 0.009999999999999998 +0.08800000000000001 0.0235 0.031 0.8574999999999999 +0.172 0.018500000000000003 0.744 0.0655 +0.034 0.0435 0.0685 0.854 +0.0315 0.9045 0.027 0.037 +0.079 0.666 0.033 0.222 + +>tree0.2_402_CACNNTGGGRG +0.014658 0.93006725 0.0180045 0.03727000000000001 +0.7010060275878907 0.025541632568359375 0.2506666428222656 0.02278567333984375 +0.06099297007751466 0.76994322706604 0.07839904739379883 0.0906648295288086 +0.4224307294845581 0.07142155715942383 0.2335843332977295 0.2725631154098511 +0.32448083074951173 0.09181119487762451 0.22186822987365723 0.3618397080001831 +0.07042035845947266 0.06205020444488525 0.09784234496307374 0.7696869952087403 +0.17618779779815674 0.0150081630859375 0.7920326928634643 0.016771471885681153 +0.20489783930206296 0.013685445625305177 0.7519782706069946 0.02943824705505371 +0.06435244031524659 0.013197906158447265 0.8740453689575195 0.048404203826904295 +0.45208382293701177 0.07533892140197754 0.3168507637634278 0.15572648085784913 +0.2500528125 0.022300125 0.6219896875 0.105657375 + +>tree0.2_403_GCCGCCCACNGTA +0.058653 0.0627 0.878647 0 +0.018422 0.825248 0 0.15633 +0.145687 0.695538 0.042055 0.11672 +0.13187 0.054496 0.730384 0.08325 +0.005945 0.922367 0.021884 0.049805 +0.180181 0.726139 0.001824 0.091856 +0.000591 0.983915 0.013289 0.002205 +0.830442 0.134428 0.022046 0.013083 +0 0.959805 0.03913 0.001065 +0.189696 0.286886 0.306805 0.216614 +0.276363 0.010496 0.71314 0 +0.024328 0.019019 0 0.956653 +0.685034 0.068789 0.202173 0.044003 + +>tree0.2_404_TCCNYCCASSNNG +0.080478 0.055532 0.083657 0.780332 +0.146406875 0.762119 0.07010999999999999 0.02136475 +0.05052003125 0.734308375 0.01102603125 0.20414559375 +0.184979693359375 0.30163204687500006 0.29767581640624996 0.215712294921875 +0.07869665869140624 0.4115926328125 0.09554599267578125 0.41413343212890624 +0.0411703837890625 0.8076832661132812 0.07513336962890625 0.07601310546875001 +0.01833828955078125 0.9461119560546876 0.02488712060546875 0.010662564941406253 +0.7014459296875 0.033646234375 0.037342454101562506 0.22756553857421877 +0.0193436025390625 0.3850306264648437 0.5727040991210938 0.022921737304687505 +0.02003527197265625 0.35455104052734376 0.5930648701171874 0.032317505859375 +0.3139191801757812 0.32070616406249997 0.1938220625 0.171552603515625 +0.2721493017578125 0.08587771142578124 0.194764521484375 0.44720821972656255 +0.2266609409179687 0.02144764208984375 0.7147285786132812 0.0371628310546875 + +>tree0.2_405_CWCANACACGCA +0.09725 0.8471249999999999 0.0545 0.001125 +0.425985 0.07661725 0.138951 0.35844675000000004 +0.15540900000000002 0.74064975 0.0099025 0.0940385 +0.622297375 0.231532375 0.0922625 0.053845375 +0.25746487500000004 0.454798125 0.035871 0.25186600000000003 +0.820598875 0.018528625 0.07815025 0.08265975 +0.26484825 0.7105742500000001 0.0055778749999999995 0.01899925 +0.7232141249999999 0.001091625 0.256050375 0.019722 +0.0135135 0.90005775 0.01233325 0.074095625 +0.08711225 0.063117 0.799768375 0.050033625000000005 +0.037055125 0.864299125 0.040774125 0.057871625 +0.51209375 0.1991395 0.14283925 0.1454275 + +>tree0.2_406_ACAGACACTCAA +0.660005 0.241649 0.08535 0.0129965 +0.0005 0.9892785 0.0005 0.0097215 +0.9488725 0.035549 0.0150785 0.0005 +0.0084065 0.005431999999999999 0.757765 0.228397 +0.635369 0.060414 0.2289535 0.075764 +0.1348975 0.6907595 0.0669945 0.1073485 +0.887142 0.1097055 0.002653 0.0005 +0.1025 0.798564 0.0780865 0.0208495 +0.046021 0.13901850000000002 0.0007785 0.814182 +0.008667000000000001 0.9619635 0.016455 0.012914 +0.8443895 0.029813 0.125297 0.0005 +0.997 0.001 0.001 0.001 + +>tree0.2_407_KTCASGTACSGT +0.037 0.045 0.364 0.554 +0.128 0.153 0.119 0.6 +0.001 0.834 0.164 0.001 +0.712 0.281 0.006 0.001 +0.001 0.453 0.54 0.006 +0.001 0.001 0.727 0.271 +0.001 0.001 0.001 0.997 +0.997 0.001 0.001 0.001 +0.001 0.997 0.001 0.001 +0.027 0.365 0.607 0.001 +0.095 0.001 0.686 0.218 +0.013 0.097 0.258 0.632 + +>tree0.2_408_GCSGTCCCGYA +0.086231 0.015349 0.89842 0 +0.11982475 0.6646352499999999 0.0820045625 0.1335354375 +0.15817390625 0.45261325 0.33213025 0.05708265625 +0.00599190625 0.0114163125 0.89800125 0.08459053125 +0.0958030625 0.0072749375 0.028285718749999997 0.86863628125 +0.01375734375 0.8851788125 0.08091728125 0.0201468125 +0.12645671875 0.586340125 0.08993459375 0.19726834375 +0.01378728125 0.91982328125 0.01087259375 0.055516875 +0.0119389375 0.08764093749999999 0.8621010625000001 0.038319093750000005 +0.00117415625 0.489503375 0.16395615624999998 0.34536625 +0.6498762499999999 0.01464 0.313511125 0.021972625 + +>tree0.2_409_AMGTASCTG +0.7565994191106205 0.031292163508700205 0.18322077646203527 0.028887644354024904 +0.4442911611809712 0.34453753763146144 0.11721444098103792 0.0939412086216714 +0.06915304630639219 0.0987946900594216 0.6887934476538133 0.14322756374680062 +0.02853300873190351 0.10891927256443724 0.02552304881250113 0.8370247191380318 +0.8346262262371722 0.07028123657619208 0.05289767728666589 0.04219477516483329 +0.06224828478092141 0.31926746789442934 0.5403830775831007 0.07810160783006437 +0.050272057999048374 0.8501852972344812 0.030436708222063256 0.06910593271390536 +0.03698574429386482 0.020159673748064787 0.09110860969718546 0.8516989868278912 +0.04214440998110175 0.049344098960101605 0.7645638719982804 0.14396352535952628 + +>tree0.2_410_CMGTSWCTGCG +0.036005 0.739644 0.195881 0.02847 +0.4624045 0.35375290625 0.14994034374999998 0.033902328125 +0.02970271875 0.021572671875 0.923612046875 0.02511253125 +0.042635515625 0.05245846875 0.03919203125 0.8657139687500001 +0.12505031249999998 0.316631703125 0.491785984375 0.0665320625 +0.4157642656250001 0.046671203125000005 0.14249543750000002 0.395069390625 +0.2478679375 0.661710703125 0.0384141875 0.052007109375 +0.0614555625 0.142829953125 0.14476878125 0.6509455468750001 +0.038775234374999995 0.0498265625 0.8037673125 0.10763092187500002 +0.13540831250000002 0.5977026249999999 0.154404875 0.11248409375 +0.16250387500000002 0.047814625 0.725445 0.064236375 + +>tree0.2_411_WAGCCAWRGCWAA +0.2807542841796875 0.11119997167968752 0.11996416796875 0.488081576171875 +0.9616445423583984 0.003388562927246094 0.01758002813720703 0.017386866577148438 +0.05657438989257812 0.02642784320068359 0.8074372774047851 0.10956445825195311 +0.04793700073242188 0.8560865230102539 0.02872628820800781 0.06725421929931641 +0.13774719592285156 0.7103637081298828 0.014055517211914064 0.13783366467285155 +0.7714860408325196 0.062110174621582026 0.052993181701660154 0.11341046612548827 +0.43876670135498047 0.09710543194580078 0.02814308837890625 0.4359848134765625 +0.3644894181518555 0.020283467529296877 0.5682094401855469 0.04701765264892579 +0.21004191833496097 0.06317458020019531 0.6109317769775391 0.1158438973388672 +0.0664727406616211 0.837703989868164 0.05491591809082031 0.040907382629394536 +0.4759253799438476 0.030411462524414058 0.02045209112548828 0.47321112890625 +0.5078255549926758 0.23762403546142577 0.2222398112182617 0.03231042645263672 +0.5414306249999999 0.14171224999999998 0.2148889375 0.1017180625 + +>tree0.2_412_ANTCMYAGCTC +0.7115493203125001 0.1161922578125 0.0919213125 0.0803370625 +0.3868779655685425 0.1846973088207245 0.34701327601242066 0.08141140922927856 +0.10713517919611933 0.07604052797079086 0.033672627466678616 0.7831515993442536 +0.01204527751803398 0.887222550867796 0.032724418699264526 0.06800761742949485 +0.4273300256085395 0.42030934820294386 0.07009167315721512 0.08226890230584144 +0.016684810147047043 0.5509490911767483 0.026716646566152576 0.4056493217153549 +0.6762878223283291 0.11257252741456032 0.1651274527938366 0.04601220841836929 +0.06735752094411848 0.09087585637283328 0.774313678971529 0.06745294666838647 +0.03955408373212815 0.8811440304660797 0.033384092091798774 0.04591779378151894 +0.26446015418195723 0.16977800509142874 0.030426226883649824 0.5353355682489872 +0.06037496780204773 0.6713451837978363 0.1978404130077362 0.07043953301048278 + +>tree0.2_413_AACSAAAWC +0.8950640000000001 0.0630145 0.01038675 0.03153525 +0.55100375 0.26627725 0.1544235 0.0282955 +0.05472075 0.88451825 0.028033 0.03272775 +0.05364 0.4638495 0.480787 0.001723 +0.83596 0.08051074999999999 0.05346575 0.03006375 +0.914426 0.03100625 0.009202 0.04536525 +0.8700859999999999 0.02269375 0.05696075 0.0502595 +0.276722 0.07993375 0.09889875 0.54444525 +0.11828175 0.84654275 0.02769 0.0074855 + +>tree0.2_414_GNCKTTGYTA +0.030992437499999997 0.0660100625 0.8566343125 0.046363125 +0.30601853515625 0.23811324023437505 0.087566517578125 0.368301734375 +0.0268449404296875 0.910621107421875 0.02066259375 0.0418713662109375 +0.037732537109375 0.20711552734375 0.447404150390625 0.3077478193359375 +0.0470746669921875 0.0822300556640625 0.0362705625 0.8344246074218751 +0.0493273603515625 0.0581275654296875 0.26006661132812503 0.6324784511718751 +0.1727816357421875 0.04659229199218749 0.6593461474609374 0.1212798662109375 +0.1146342392578125 0.373378703125 0.0447611923828125 0.4672256240234375 +0.04011368359375 0.06576841601562501 0.036136763671875 0.8579811005859375 +0.6534095234374999 0.122147123046875 0.09472637695312498 0.12965448828125 + +>tree0.2_415_ACACATAGACCA +0.770715 0.224572 0.001494 0.00322 +0.13290249999999998 0.5790415 0.2600035 0.028053 +0.793866875 0.113515875 0.06800425 0.024612875 +0.189120125 0.5795399375 0.025514625 0.205825625 +0.9598635751953124 0.0052613447265625 0.0246421884765625 0.0102330712890625 +0.020958350585937497 0.0733074814453125 0.0939923837890625 0.8117420595703124 +0.8891027265625 0.0099920625 0.081417291015625 0.0194881015625 +0.0188483515625 0.16844432519531252 0.716797857421875 0.0959095283203125 +0.8109967705078125 0.028646045898437493 0.136905943359375 0.023451228515625 +0.031453111328125 0.9258474599609374 0.0258458134765625 0.016853356445312502 +0.1019834345703125 0.8277872480468751 0.008971181640625 0.0612583134765625 +0.9125920722656248 0.06370080078125 0.00857239453125 0.01513459765625 + +>tree0.2_416_GKGGSCAACRTR +0.001 0.06 0.936 0.003 +0.038 0.0075 0.5593775 0.3951225 +0.16359328662109376 0.05258207958984375 0.6340445600585938 0.14978002490234377 +0.171162680847168 0.0742807607421875 0.6999073967895508 0.054649306884765624 +0.06746963989257812 0.4395196198730469 0.4423584428100586 0.050652349121093745 +0.06689890954589844 0.865965577697754 0.024921628967285156 0.042213902648925786 +0.7534427652587892 0.1212802505493164 0.05023210687255859 0.07504498504638672 +0.6275867648925781 0.10805288256835938 0.1376787487792969 0.1266815859375 +0.04272500170898437 0.6352405112304688 0.2625146677246094 0.0595198203125 +0.48812679052734376 0.022942992919921877 0.4633993159179688 0.025530882812500003 +0.03208830651855469 0.16081067742919922 0.03351702026367188 0.7735839451293944 +0.3447055806274414 0.06112653387451173 0.5699830874023437 0.02418513073730469 + +>tree0.2_417_CMGGAAGTARCN +0.122256375 0.601861125 0.24183937499999997 0.034043125 +0.38760700390625 0.57199720703125 0.02765351171875 0.01274240625 +0.03050251171875 0.00465554296875 0.80631271875 0.15852937109375 +0.0305534140625 0.00904092578125 0.92728381640625 0.03312196875 +0.93048843359375 0.035432039062500004 0.02526100390625 0.00881851953125 +0.94585946875 0.01444478515625 0.02759080859375 0.01210505078125 +0.1339190390625 0.024010574218749997 0.8325525390624999 0.00952185546875 +0.040567656249999993 0.03841673046875 0.0440313359375 0.87698060546875 +0.65025776171875 0.12960899609375 0.18512512109375 0.03500018359375 +0.38198838671875 0.12481869140625 0.4132302070312499 0.07984162890625 +0.052125859375 0.687887859375 0.17358826562500002 0.086413765625 +0.037 0.256 0.32499999999999996 0.382 + +>tree0.2_418_TYTCCTTCCGMN +0.197 0.02 0.001 0.782 +0.008 0.369 0.206 0.417 +0.073 0.001 0.221 0.705 +0.092 0.877 0.03 0.001 +0.073 0.8 0.086 0.041 +0.089 0.001 0.168 0.742 +0.171 0.001 0.029 0.799 +0.02 0.978 0.001 0.001 +0.001 0.866 0.132 0.001 +0.001 0.001 0.997 0.001 +0.328 0.506 0.115 0.051 +0.242 0.174 0.414 0.169 + +>tree0.2_419_RTTRCNTAANN +0.606125 0.062 0.31462500000000004 0.017375 +0.040458398437499994 0.0326346875 0.0365910390625 0.8903160078125001 +0.023140171874999997 0.0973001875 0.0538498125 0.8257098984375 +0.494333296875 0.06172146875 0.29254203125 0.1515282421875 +0.0573507109375 0.660160921875 0.17897029687500002 0.103518078125 +0.3213925703125 0.08742428124999999 0.2141117265625 0.3770794140625 +0.097615078125 0.1102886484375 0.0389045703125 0.753207390625 +0.696631265625 0.25521757031250003 0.0248076875 0.023343328125 +0.952086921875 0.0158931953125 0.0210531171875 0.01096684375 +0.08439238281249999 0.29347184374999996 0.4318266875 0.1904029453125 +0.14031695312499998 0.367450953125 0.2241306875 0.26814046874999997 + +>tree0.2_420_NNNTGACGTNA +0.17145035839843753 0.42594991650390623 0.22457104931640623 0.17799549511718749 +0.29616024211120606 0.1593427481842041 0.3919303506011963 0.1525820648956299 +0.31254271342706685 0.3880483285722733 0.20003650499272344 0.09938422810578346 +0.0460659913649559 0.03122199004912377 0.021193689616203305 0.9015184049623012 +0.047104184280276296 0.04197985236155986 0.8469318996404409 0.06398417612349987 +0.6085800303351878 0.07911413679432869 0.2899703814616203 0.02233550487935543 +0.044742296780467025 0.8984263576878311 0.03191212586808204 0.02491919471716881 +0.19126701628530024 0.2512198155674934 0.5334820368648767 0.024031128500342367 +0.07983157122826576 0.19951206792879103 0.03621827625143528 0.6844303897639513 +0.0472986009068489 0.4831905611124039 0.23953362590086455 0.22991484151256084 +0.859259792535305 0.02502221742296219 0.07491736576890945 0.040784616772174834 + +>tree0.2_421_TGGAAAWGCCWC +0.0025 0.0095 0.0165 0.9715 +0.06764809375 0.0231674375 0.823650875 0.0855335625 +0.08150240624999999 0.053905546875 0.727021125 0.13757096875000002 +0.75740231640625 0.062812375 0.14648678515625002 0.033298546875 +0.8531255234375 0.07946848828125 0.052885894531250005 0.01452001171875 +0.92818675 0.0215330625 0.03198750390625 0.01829280078125 +0.43364971875 0.06054201171875 0.03804759765625 0.46776078125 +0.087594734375 0.15004637890625 0.72490103125 0.0374578359375 +0.13040667578125 0.729047625 0.07949015625 0.0610555859375 +0.1024105859375 0.5883492382812501 0.08595366015625 0.2232864765625 +0.36140833203125 0.05471151953125 0.09361116015625 0.49026894140625 +0.08567875 0.7524038125 0.057389125 0.1045285 + +>tree0.2_422_TNWANNATKCMNA +0.196681625 0.063402 0.19405175 0.545864625 +0.3433631364746094 0.11301598583984376 0.19125745361328125 0.3523009006347656 +0.36004159814453124 0.15049416088867185 0.073754736328125 0.4157093479003906 +0.5133431296386719 0.10480378173828124 0.22261054785156248 0.15924692700195311 +0.21722174487304688 0.08929022607421874 0.3611681923828125 0.3323201379394531 +0.2759033449707031 0.3631559128417969 0.035342831787109376 0.32560917236328124 +0.8420230905761719 0.06217702026367187 0.03743747290039062 0.05836227001953125 +0.129294794921875 0.03428281518554688 0.05198589624023437 0.7844402998046874 +0.02839124291992188 0.030697146484375 0.42620716845703127 0.51470464453125 +0.06996394018554686 0.8267005158691406 0.03939344799804688 0.06394206713867186 +0.4108533937988281 0.5119695695800781 0.0241985654296875 0.052978551025390626 +0.48051630224609376 0.15553726025390624 0.1450293454589844 0.21891708471679688 +0.997 0.001 0.001 0.001 + +>tree0.2_423_NGNASYTTGGMM +0.181838375 0.18235025 0.16902287500000002 0.4666635 +0.092032875 0.06636734375 0.6959379375 0.1456618125 +0.13284821337890626 0.2556551962890625 0.4112097568359375 0.2002947102050781 +0.5134193133544922 0.2294499268798828 0.1379095753173828 0.11922116442871096 +0.16044276025390625 0.4703259538574219 0.2836025015869141 0.08559757153320315 +0.017838914672851564 0.32977490563964845 0.06427244250488282 0.5881137290039062 +0.02441787152099609 0.10740240087890623 0.018909311401367188 0.8492703942260742 +0.02778930462646485 0.05579201916503906 0.02297467974853516 0.8934440059204101 +0.08434164727783204 0.06057574212646485 0.811714919189453 0.043336436645507806 +0.1619179794921875 0.06586213043212891 0.6886276388549805 0.08357659478759766 +0.4068470231933594 0.4444093954467774 0.07571926257324219 0.07300868511962891 +0.5285861146240236 0.2934062203369141 0.054536142578125 0.1232215336303711 + +>tree0.2_424_ANNNMATGTAAWT +0.5288824999999999 0.260013 0.2006045 0.0105 +0.263557375 0.36616375 0.10080325 0.269475875 +0.071333080078125 0.3974580546875 0.29543954882812495 0.235769390625 +0.1223976875 0.20818897460937497 0.427140330078125 0.242272966796875 +0.4596937304687499 0.4141643046875 0.059053078125000005 0.067088896484375 +0.79071230078125 0.1019098828125 0.08048206835937499 0.026895757812499997 +0.06437296875 0.09321003515625 0.05064317578125 0.7917738457031249 +0.018554046875 0.03096264453125 0.909494779296875 0.0409880625 +0.06011450976562501 0.09279891015625 0.254032021484375 0.5930545410156249 +0.705739765625 0.05002752148437501 0.14586554296874998 0.098367115234375 +0.881959955078125 0.0518648984375 0.04542151171875 0.020753767578125 +0.484311625 0.115944796875 0.015822906249999998 0.3839205625 +0.02358 0.022046 0.098469 0.855904 + +>tree0.2_425_NNNTACNNRTGTGC +0.31458259375 0.142428125 0.41365253125 0.12932896875 +0.3280047187194824 0.38922110125732423 0.06415680731201172 0.21861727611541748 +0.1295672424776554 0.31493575435209276 0.27633837475132944 0.27915459996247294 +0.06627442561221122 0.09178762826514245 0.049513102711915974 0.7924247929561139 +0.7810633018927575 0.04654025658202171 0.09622897553420066 0.07616748452949523 +0.07093875230765344 0.6044259536135197 0.04604687743473053 0.2785845382688046 +0.4978152150158882 0.24161647117638585 0.1953087704331875 0.06525955652594567 +0.3697727336475849 0.0639805953066349 0.24590076072883604 0.3203458981835842 +0.3253369094941616 0.06541017936468124 0.4618247297108173 0.14743297898697855 +0.08631971693634988 0.1675512778801918 0.05059653971862793 0.695530506301403 +0.21311304549741744 0.0997827470831871 0.5199198918673992 0.16715306531238555 +0.10967348928833008 0.229266449005127 0.07898673605346679 0.5821592586669921 +0.170291203125 0.0660913125 0.677669078125 0.08591723437500001 +0.088 0.537 0.126 0.249 + +>tree0.2_426_RNAAKACASAYNT +0.323708 0.140933 0.486665 0.048694 +0.409572765625 0.0910025859375 0.24748146875000004 0.2519429453125 +0.7831465546875 0.03200664453125 0.07680904687500001 0.10803769140625 +0.5346092001953124 0.1214547880859375 0.20439008691406252 0.13954587548828123 +0.06559784716796875 0.107941146484375 0.4081093227539062 0.4183518320312501 +0.5822877377929687 0.0736195185546875 0.2209527221679688 0.12314005224609376 +0.17053331591796875 0.7446208759765625 0.04572141796875 0.039124350097656246 +0.874832 0.03408386669921876 0.0461860634765625 0.04489816796875 +0.04547590869140625 0.5165195810546875 0.34240346337890626 0.09560103613281248 +0.7656897612304687 0.039587879882812496 0.15967604003906255 0.0350461923828125 +0.06314082373046875 0.4417004829101563 0.11094454931640624 0.38421011279296874 +0.14316307861328126 0.23109167578125 0.4875689960937501 0.138172310546875 +0.0427813125 0.29050426562500004 0.07208457812499999 0.5946300625000001 + +>tree0.2_427_AAAGSWRTMCTNN +0.978753 0 0.021247 0 +0.5465224921875 0.1763270234375 0.14491973046875 0.13173073828125 +0.8485203046875 0.02205790625 0.0436409140625 0.08578086328125001 +0.106450453125 0.02298614453125 0.80069838671875 0.069865046875 +0.09183734375 0.3849731328124999 0.39733522265625 0.12586990234375 +0.39914291015625 0.07090369921875 0.08655808984375 0.4433953359375 +0.5737492382812499 0.04312031640625 0.303282859375 0.079831828125 +0.07705775000000001 0.08381605078125 0.049131972656249995 0.78999421484375 +0.50091050390625 0.26220720703124994 0.06877858203125001 0.16806865625 +0.06621513671875 0.7965340937500001 0.06571112109375 0.07155914453125 +0.1054763046875 0.015761265625 0.02622596875 0.8525248671875 +0.082620984375 0.26149723437500005 0.457255984375 0.198625796875 +0.2178558125 0.3908864375 0.20166303125 0.190172875 + +>tree0.2_428_NAAAATAACGTNWM +0.232594 0.276852 0.308905 0.18165 +0.895983 0.041291 0.025718 0.037009 +0.818022 0.032204 0.086134 0.06364 +0.913103 0.0255 0.055519 0.005878 +0.90894 0.00981 0.016624 0.064626 +0.015856 0.252518 0.052479 0.679146 +0.767934 0.088737 0.124028 0.019301 +0.862585 0.02954 0.088066 0.019809 +0.112305 0.759513 0.032267 0.095915 +0.138679 0.006213 0.757975 0.097133 +0.168348 0.169261 0.077515 0.584875 +0.29604 0.117518 0.27997 0.306473 +0.447775 0.038686 0.038537 0.475001 +0.312671 0.617072 0.070257 0 + +>tree0.2_429_NSAAAYNTCNKCM +0.08843918749999999 0.39908209375 0.193940625 0.318538125 +0.117663240234375 0.43755209472656253 0.3335721728515625 0.111212515625 +0.6604259607543945 0.1338143121948242 0.16236861791992188 0.043422320007324225 +0.7911412047049702 0.08990026241442561 0.08209824793425202 0.036860426709115504 +0.8138991725437938 0.045905848741352555 0.0939878312665224 0.04620720311525464 +0.04676105472946167 0.39872075845867394 0.02681563148128987 0.5277024136069417 +0.20049089859107136 0.4787604693630934 0.20259606519013643 0.11815257040905952 +0.04219695031583309 0.049056892315596345 0.02770649113559723 0.8810394417558909 +0.014313516001820565 0.926139963822633 0.026641339775770902 0.032905343346536164 +0.2315141557700634 0.309442700522393 0.02024250861415267 0.4388007709691525 +0.10775117062956097 0.11165240882036088 0.4306901864824593 0.3498593097360134 +0.13018198725104332 0.5365745100480914 0.21844028909498453 0.1148032076778412 +0.474 0.35 0.001 0.175 + +>tree0.2_430_KNAAAACYAKWNN +0.1185 0.1025 0.377 0.402 +0.33969258593749996 0.19334690234375 0.14531269140625 0.32164778515625003 +0.505558159318924 0.1460319472522736 0.2353805283985138 0.113029366979599 +0.8931276632661819 0.029727261830329893 0.03737768171262741 0.039767411676406864 +0.8197673436436653 0.05010017128562927 0.09019527089500427 0.03993712728643417 +0.852214054602623 0.035258355421066284 0.07430541152763366 0.03822215438508987 +0.1835673061213493 0.7222944095053674 0.053380707986354824 0.040757503574848176 +0.18131252740287784 0.49065781885337834 0.02726871983623505 0.30076096620082854 +0.5496842357711792 0.05069752788734436 0.24273788121557235 0.15688029198598863 +0.028759006161689755 0.09989162599658968 0.3295753518090248 0.5417739982676506 +0.329138599603653 0.17768907513856888 0.06314928212308885 0.4300250137705802 +0.2307393255004883 0.24422271063232423 0.046754789489746096 0.4782870859375 +0.19104800634765623 0.41305760009765624 0.1318606770019531 0.26403182543945314 + +>tree0.2_431_NNTNTACYANNNN +0.138700888671875 0.22761547265625004 0.38045290039062496 0.25326003515625 +0.4359003705813996 0.2104256274567265 0.21075042464050464 0.14292191121348366 +0.08003513800791906 0.0909715562923517 0.09562615841213404 0.7333662946201928 +0.29351448884158293 0.14269896417860023 0.3584817024536735 0.20530511473823443 +0.148940764829756 0.13279988595900463 0.07689435138019092 0.6413941168154524 +0.6671985619484465 0.0751619076951365 0.12139417590246186 0.13623860845608057 +0.09097923999994913 0.6140639590912622 0.11024155589738335 0.18471513280414428 +0.10977821472127168 0.5514828998000345 0.05975843062708329 0.27898074297194075 +0.7642839188959297 0.04150341276825394 0.05739861964181496 0.1368139976312387 +0.1828683244857837 0.46476498789424425 0.11368332048598688 0.23863649549026497 +0.32438078257386493 0.2590864132658675 0.07578527317485448 0.34074842925746135 +0.3683776232952029 0.18010431254736706 0.19170778276793848 0.25981059285184926 +0.22423512072753907 0.36770193817138674 0.2777158545532227 0.13033997003173828 + +>tree0.2_432_NNNANCACAGCN +0.25446664925003054 0.23513890650844577 0.24553673041820528 0.2648342950181961 +0.3678386369447708 0.17693913732337951 0.12836748505043982 0.3267814536583423 +0.494252178681612 0.2096642177448273 0.20442271367931364 0.09165625860404968 +0.6508659261140823 0.10217830990505218 0.1843467288975716 0.06263641436576844 +0.27281686239290237 0.3872625240182877 0.26496411397838593 0.07498774710536003 +0.18155212540483476 0.5246142476625443 0.04600146745920181 0.24783213138985632 +0.7326075776615143 0.06412561754775047 0.14992659227657318 0.053372459002971655 +0.06458475049996376 0.8373206902034283 0.046125987198352814 0.051968586487770085 +0.6020052446980477 0.09344325479531287 0.15654900322151188 0.14797130708837508 +0.13832846357727052 0.08424807156181335 0.6432145789728164 0.1342087325334549 +0.15713156359863284 0.5345453064880371 0.13780877557373047 0.1705143773498535 +0.2645392507324219 0.35355149316406254 0.14215400024414063 0.23973981542968753 + +>tree0.2_433_TACMNAGCACTTN +0 0.006094 0.095429 0.898476 +0.622206 0.058868 0.1993375 0.1195885 +0.1449012459716797 0.6543667713623047 0.05286087353515625 0.14787163757324218 +0.470341234131217 0.30974471030694245 0.06362444212758542 0.15629006041103605 +0.4207477192687392 0.2682543315889165 0.08485220665463059 0.22608311294898015 +0.9195172405443156 0.013046004487775268 0.04577143143524974 0.021665326374713332 +0.04037610140200332 0.03965502440879494 0.7986984792222753 0.12126995119273665 +0.04235391343462467 0.8575611308812984 0.03383419743308798 0.06625129206041246 +0.922761318034686 0.020609025342497977 0.026626702774148435 0.03000341846290231 +0.01509086607794091 0.7463941902145408 0.15235474948364497 0.08616070326501876 +0.05694778763588518 0.07650936273571848 0.19056775993984565 0.6759746218145117 +0.010427494916561992 0.03218024945209547 0.07405446079890429 0.8833378693377152 +0.1926660194079876 0.195609852907449 0.13707995534311235 0.4746443036250621 + +>tree0.2_434_GAAAAGCYACAGA +0.257375 0.0015 0.740125 0.001 +0.5633730078125 0.270614265625 0.0765511328125 0.089461484375 +0.828675798828125 0.121026505859375 0.03404986547851563 0.01624784228515625 +0.8615081936035156 0.05828515051269531 0.034173590332031246 0.04603307678222657 +0.9580611644287108 0.00620101318359375 0.02134864392089844 0.014389194335937504 +0.03022537036132812 0.02763380712890625 0.8910991854248047 0.05104159204101563 +0.18982376232910156 0.7244829046630858 0.05310855920410156 0.03258480505371093 +0.009706079711914062 0.5256174360351562 0.010732909423828124 0.453943591796875 +0.639880375366211 0.038194208740234374 0.2837529609375 0.03817239929199219 +0.10967198376464844 0.6667380605468749 0.032021268432617184 0.191568685546875 +0.8928315989990234 0.008214709228515625 0.08450862866210937 0.014445066772460937 +0.057884875 0.04025237499999999 0.871409 0.030453625 +0.692 0.0475 0.2075 0.053 + +>tree0.2_435_WRCRGCTTTT +0.29196445703124996 0.06922674609375 0.10368291796875 0.5351259765625 +0.3869905390625 0.1714545546875 0.39001011718750006 0.05154489843750001 +0.032314324218749996 0.9110524140625 0.0201311875 0.03650205859375 +0.45966866015625 0.04430845703125 0.4517053984375 0.04431745703124999 +0.06213438671875 0.05148912890625 0.816203359375 0.07017320703124999 +0.1786103046875 0.6105511601562501 0.07605872656250001 0.13477980078125 +0.04288844140625 0.12714025 0.0267624375 0.8032089140625001 +0.088691125 0.05591523828125 0.27751190625 0.57788173046875 +0.01770954296875 0.29461346484375 0.05631883984375 0.6313581328125 +0.023521078125 0.11278559375 0.041188703125 0.82250465625 + +>tree0.2_436_CCNCSYTTTAA +0.09130790817260742 0.6155688913574219 0.13661679403686522 0.1564715020751953 +0.11326926725769045 0.6774531876983643 0.10733967390441893 0.1019248422088623 +0.11413430168151856 0.186943853805542 0.425816296585083 0.2731487425079345 +0.04600927896118164 0.8214042324829101 0.03315827476501464 0.0994282046356201 +0.05885801667785645 0.5150791708526611 0.3779498286590576 0.04811272775268555 +0.0380993264465332 0.3659526823883057 0.18843662246704104 0.4074560297851562 +0.05492713357543944 0.1725878109436035 0.017348683227539064 0.7551365341339111 +0.07545289685058594 0.05404075073242188 0.028617111480712897 0.841889405380249 +0.08824627894592285 0.2047933697052002 0.02127758250427246 0.6856768006286621 +0.546754562286377 0.2560302957458496 0.04204911660766601 0.15516614364624023 +0.6083645535888672 0.09968211328125 0.14926467785644532 0.14262598315429686 + +>tree0.2_437_GARAGCAGCNTTT +0.007149 0.053595 0.932762 0.006495 +0.912221375 0.017502 0.034039875000000004 0.036236500000000005 +0.37922975 0.118249625 0.47134675 0.03117375 +0.912157875 0.02956575 0.03198625 0.026290125 +0.04077075 0.062501125 0.8891336249999999 0.0075945 +0.269790875 0.68742575 0.033869875 0.008913500000000001 +0.60521875 0.264048 0.103576625 0.0271565 +0.03777562500000001 0.03472987500000001 0.886336875 0.041157625 +0.027041875 0.766853625 0.133213 0.0728915 +0.20247075 0.1241745 0.434050375 0.239304625 +0.029241 0.10441775 0.06560475 0.8007365 +0.026961 0.04391425 0.0084445 0.92068025 +0.0055625 0.14475000000000002 0.0211365 0.8285505 + +>tree0.2_438_CKANCCCKTMTYT +0.2125 0.6525 0.0595 0.0755 +0.145719 0.04425 0.379574 0.430457 +0.69071915625 0.07423047656250001 0.1275111875 0.10741452343750002 +0.13542054788208008 0.3967817435913086 0.12790220587158202 0.3398018246765136 +0.07039586706542969 0.680900586593628 0.09902374635314942 0.14961722854614257 +0.09320572300720216 0.5673211259155273 0.18917109678649904 0.15036464079284667 +0.053825068939208985 0.7476487695465088 0.05987742597961425 0.1386487117919922 +0.053118279144287114 0.06420238148498535 0.3365635185699463 0.5461158431549072 +0.1488617491455078 0.04394894180297852 0.0512331634979248 0.7559561589813233 +0.44049905235290526 0.38445582878112794 0.06085719277954102 0.11418791693115236 +0.08625798971557616 0.1130804757232666 0.0467201056060791 0.7539414385986328 +0.03642775512695313 0.5890330079803467 0.033283119400024416 0.34125603591918946 +0.12580575805664063 0.10422158081054687 0.07905032250976562 0.6909223117675782 + +>tree0.2_439_CYCCYAMAKNTCCA +0.1055 0.8007500000000001 0.053750000000000006 0.04 +0.0253125 0.35040625 0.02025 0.60403125 +0.23548143493652343 0.5525898155517578 0.07168638513183595 0.14024231457519531 +0.04759475134277344 0.650988567199707 0.05383072106933594 0.24758598681640623 +0.04848942016601562 0.5911460753173827 0.06293738323974608 0.2974271027832031 +0.7753161964111328 0.08944270672607421 0.08691318322753908 0.04832792504882812 +0.42103752044677734 0.43114094476318354 0.06084165106201171 0.08697984265136718 +0.7991038239746093 0.04511294836425782 0.10798399005126952 0.04779924237060547 +0.1410200090332031 0.09233252301025392 0.28326715075683595 0.4833107539672852 +0.3688989852294922 0.23473481591796871 0.09890147100830078 0.29738669226074216 +0.05074236340332031 0.07881036431884765 0.05945918542480469 0.8109880663452148 +0.030973005920410156 0.8504470227661132 0.03987001837158203 0.07870993676757812 +0.09727781030273436 0.6192844133300781 0.135405587890625 0.1480321767578125 +0.6013520910644531 0.2989102668457031 0.06171998168945312 0.03802551977539063 + +>tree0.2_440_CTGGAYNTCCAGG +0.04574584375 0.72470040625 0.1989318125 0.0306216875 +0.04869680126953125 0.00899824365234375 0.006472069091796875 0.9358329807128906 +0.15379278332519533 0.022697039306640625 0.8115667951660157 0.011943341186523435 +0.05843640197753906 0.032400226684570314 0.8825469089355469 0.02661634423828125 +0.7026336904296875 0.025937587890625 0.23731626525878907 0.034112502319335936 +0.050637444335937504 0.5871877121582031 0.04491100524902344 0.3172560369873047 +0.4867458153076172 0.21822160034179688 0.23088766833496088 0.0641449423828125 +0.03374093322753906 0.057612716064453125 0.016044236572265624 0.8926020897216798 +0.09365048022460938 0.7667941027832031 0.07465198071289061 0.06490352221679688 +0.01566753076171875 0.8700488919677734 0.006779710327148437 0.10750387377929688 +0.8097678872070312 0.008980656005859376 0.1364949002685547 0.04475655651855469 +0.041937652587890624 0.017250854492187502 0.8937963562011718 0.04701513671875 +0.17221539306640624 0.0293662109375 0.7345211791992188 0.063897216796875 + +>tree0.2_441_TCNGAGGKKGCAGT +0.2110865 0.0448125 0.03625 0.707851 +0.08162620312499999 0.8580020156250001 0.025428796875 0.0349430625 +0.30501702734375 0.3695793632812501 0.0419088359375 0.28349467968750003 +0.017368175815582275 0.05177088376045227 0.9150402284383774 0.01582075591468811 +0.5905389185714721 0.1158067942790985 0.06349160915517807 0.23016284052324296 +0.19453422121095656 0.021392812874794005 0.7600228886041641 0.024049861571788785 +0.03448690071201324 0.09767554063796996 0.8152272833433151 0.05261031221580506 +0.13417960964012146 0.04136608879709243 0.3826301709399223 0.4418241385927201 +0.04672131197500229 0.08382315590429305 0.301804317173481 0.5676514356303215 +0.07993129293441772 0.08817199257707595 0.8028154531960487 0.02908134629011154 +0.04408118518781662 0.626322962635994 0.14240750561904905 0.187188437432766 +0.8223786133947373 0.06018532704544068 0.08596214727258682 0.031473839285373686 +0.05833463702392579 0.19519023391723633 0.6826100718688964 0.06386505743408204 +0.0300575 0.0237165 0.01566275 0.93056375 + +>tree0.2_442_RRNNAACRTGGCG +0.540264 0 0.404026 0.05571 +0.338944 0.049029 0.599473 0.012553 +0.13292909375 0.34671009375 0.1949119375 0.3254481875 +0.2888392650704384 0.3856558623931408 0.2879533802657127 0.03755206189537048 +0.7016908417295218 0.10872300634777546 0.09866562869739531 0.09092088675129414 +0.7905463300828934 0.02399993889594078 0.08744886944508552 0.09800486711478232 +0.02209645511817932 0.9191114477825164 0.03704473250854015 0.02174735460889339 +0.6399326485182046 0.020895991213440893 0.3247493669252396 0.014422136952281 +0.0279972538446188 0.212502358846426 0.06431529947853087 0.6951850425167083 +0.2776063480648994 0.05128456816887855 0.659467330545783 0.011642142828583717 +0.03021954560339451 0.013069640274047853 0.9297240717173816 0.026987382552146912 +0.06660456786346435 0.7378949411222935 0.0730397232568264 0.1224612469303608 +0.10695123112773897 0.05094816933917999 0.7685373402209281 0.07356316506767274 + +>tree0.2_443_TCCASGTGSGGK +0.0968788359375 0.19363361328125 0.14512585156250002 0.564361703125 +0.03752054589843751 0.8775754497070312 0.06958260925292968 0.015321809936523436 +0.09585080908203128 0.7939880052490235 0.0671624295654297 0.042998324218749995 +0.7638141602783204 0.04505094604492188 0.16801410717773438 0.023120803100585938 +0.03142641247558593 0.5069850092773437 0.44188142712402345 0.019707733642578124 +0.21972756640625 0.08995111071777344 0.6759684582519532 0.014352930175781252 +0.025949340576171872 0.19440203662109376 0.06311214135742188 0.7165365444335938 +0.02135498767089844 0.10891223205566408 0.8182799776611329 0.05145318896484375 +0.026720417236328124 0.5451706353759767 0.2834314787597656 0.1446774285888672 +0.049050212890625 0.049748503906250005 0.8340942519531249 0.067107482421875 +0.01386384375 0.017092203125 0.946598421875 0.022445609375 +0.09429025 0.059750750000000005 0.45464375 0.391315 + +>tree0.2_444_KYGGCCMYCTTSG +0.237 0.001 0.383 0.379 +0.010952625 0.43139075 0.02525 0.532406625 +0.28158462500000003 0.0672168125 0.5643018125 0.086896875 +0.0849265625 0.034382750000000004 0.827321 0.0533696875 +0.0057584375 0.8767910624999999 0.07792550000000001 0.039525 +0.08120325 0.7142779375 0.0218870625 0.18263175 +0.509867625 0.3475715625 0.084502 0.058058875 +0.042951375 0.3298329375 0.08048612499999999 0.5467293125 +0.032964375000000004 0.6332927500000001 0.0923669375 0.2413761875 +0.032998937500000006 0.088599125 0.038727624999999995 0.8396743125 +0.0188870625 0.0254494375 0.160399875 0.7952634999999999 +0.05665125 0.267830625 0.526698125 0.14882006250000002 +0.005389 0.082684 0.911927 0 + +>tree0.2_445_RGMCATGGNGR +0.3676059609375 0.04910411328124999 0.53043029296875 0.05285984765625 +0.07690020117187499 0.25880980078125 0.6032482109374999 0.061041904296875005 +0.5209284833984374 0.32143093359375 0.0575381044921875 0.1001024736328125 +0.08270153750991821 0.5816927974758148 0.2213892760887146 0.11421646300315856 +0.5968165590591431 0.05992851766633987 0.2580535147027969 0.08520139203453063 +0.12984357340669633 0.10338760901212692 0.05998427586889267 0.7067846831922531 +0.04409554946947098 0.032682534739017485 0.8892590240998267 0.03396281419086456 +0.05353138663864136 0.054288214068412784 0.8466133786802292 0.04556698875999451 +0.2424755377101898 0.22436159491539004 0.08426234475374222 0.44894742649269104 +0.17170906285953522 0.05617619064855576 0.669663935555458 0.1024509080581665 +0.417803581111908 0.050867017449378965 0.43908235931158063 0.09224706166362764 + +>tree0.2_446_AWCCGCCTGYCN +0.829602 0.060276 0.057503 0.052618 +0.5775665624999999 0.08107943749999999 0.052334593750000005 0.289019546875 +0.20618220996093747 0.6250706118164062 0.06923236425781248 0.09951484912109376 +0.10501506018066406 0.6301871491699219 0.14812095971679687 0.1166767784423828 +0.102262056640625 0.05017075830078126 0.7799018134765625 0.06766549621582031 +0.09780352673339844 0.6596742293701172 0.04549259399414062 0.19702959606933595 +0.03043171105957031 0.8654392662353516 0.079913392578125 0.024215675537109377 +0.1674006286621094 0.13059709729003907 0.08509567956542968 0.6169066811523438 +0.04382768591308594 0.17395584887695317 0.6808246313476563 0.10139178247070312 +0.16552090795898436 0.4721747957763672 0.06451845227050781 0.29778569116210934 +0.12234363232421876 0.6666795791015625 0.08642519189453125 0.124551529296875 +0.153177642578125 0.31623630078125 0.39904713671875 0.131538830078125 + +>tree0.2_447_GGWTGGGGG +0.17004475000000002 0.0028865 0.66299325 0.16407525 +0.098040125 0.001302 0.8821593750000001 0.01849875 +0.4781533125 0.14672993750000002 0.072705625 0.302411375 +0.1128958125 0.23263662499999996 0.049224125 0.605243375 +0.02613175 0.0137485 0.941006375 0.0191131875 +0.0217310625 0.0338605625 0.6954451875000001 0.2489634375 +0.0673255 0.1485203125 0.750199625 0.033954874999999995 +0.0184310625 0.03358975 0.8533948125 0.0945845625 +0.038523375 0.014363749999999998 0.905114875 0.0419980625 + +>tree0.2_448_GCGCCCGTCSG +0.038315874267578126 0.03664258984375 0.8384274873046875 0.0866159970703125 +0.04361412976074219 0.8346253939208984 0.07314319409179687 0.04861725512695313 +0.05779293579101562 0.028596360961914064 0.8095970930175782 0.10401385498046876 +0.10491918957519532 0.5577536735839843 0.1992165548095703 0.13811104724121093 +0.14002641662597656 0.5179865987548828 0.2524225440673828 0.08956444860839843 +0.03112558520507813 0.6771076086425781 0.17374025634765625 0.118026380859375 +0.020668516723632815 0.02247887426757812 0.8175355244140625 0.13931708251953126 +0.09615158813476564 0.1244399521484375 0.12766009338378906 0.6517504093017579 +0.034431772460937496 0.7212482712402344 0.18356359692382812 0.06075624877929688 +0.1072385 0.493423 0.37917553125 0.02016296875 +0.219638 0.036915 0.727434 0.016013 + +>tree0.2_449_GNCWGNGCGC +0.065358 0.176243 0.68316075 0.07523774999999999 +0.1674164453125 0.1119666875 0.362107125 0.35850967578125004 +0.020819916015625 0.920628486328125 0.05086405078125 0.007687423828125 +0.440330638671875 0.092962810546875 0.03938109765625 0.427325341796875 +0.0102843125 0.054057162109375 0.933761986328125 0.0018963359375 +0.153640287109375 0.1744804375 0.344651185546875 0.32722836328125005 +0.271159896484375 0.036530673828125 0.674205068359375 0.01810443359375 +0.0535611875 0.8441024257812499 0.008786390625 0.09354973046875 +0.1000048828125 0.03655087890625 0.7286887402343749 0.1347555625 +0.03359323046875 0.82456950390625 0.034983941406249996 0.10685324609375 + +>tree0.2_450_NGNSAGCGK +0.213720853515625 0.323134826171875 0.07415890624999999 0.3889854609375 +0.065830724609375 0.13219183349609376 0.7670567592773437 0.0349207158203125 +0.20027641552734377 0.2992264057617188 0.240422830078125 0.2600742978515625 +0.04812217236328126 0.5092941845703125 0.4289369389648438 0.0135842587890625 +0.6415512954101562 0.03252422509765625 0.06283303173828125 0.2630913852539063 +0.0187263193359375 0.04833286279296875 0.9149065703125 0.01803426025390625 +0.07548226611328125 0.7977263588867187 0.04951568798828125 0.07727573339843749 +0.049014829101562504 0.12040748583984376 0.7813608549804687 0.049216943359375 +0.063247208984375 0.14782494335937502 0.37928099902343754 0.40964679443359375 + +>tree0.2_451_TATYTGGNAKGNNA +0.1739111875 0.061433734375 0.18742021875 0.57723490625 +0.5980757170410156 0.10676413818359372 0.22260486328125 0.07256701293945313 +0.08651518689727783 0.14655034167480468 0.1955304047164917 0.571504632522583 +0.029860477648615835 0.34461720616054536 0.09135470305025578 0.5341744758868218 +0.07922549082535506 0.042994261115372176 0.03471967493104934 0.843060452762723 +0.02534308127838373 0.010847197758853436 0.8400391773021817 0.12377052794808152 +0.05880964775687456 0.10212906354284286 0.8199390665893556 0.01912223322361708 +0.4508335998318196 0.291034911860764 0.2473961012444496 0.010735366980671884 +0.7188683558958768 0.061129866289913654 0.06316541149687767 0.15683637273305656 +0.12058024180400372 0.05013167755287885 0.3771673650201559 0.4521050787830353 +0.0998136139832735 0.1671704351353049 0.5152038119052053 0.217808206997633 +0.3835222765990496 0.24900804400229457 0.0803757563775778 0.28708614150822165 +0.3771071457519531 0.29704255249023437 0.2610275241699219 0.06477591552734376 +0.5569456875 0.1223545 0.2066586875 0.113791125 + +>tree0.2_452_WGNYANCCAGSC +0.3087677875146866 0.05015048042678833 0.08102091857051849 0.5600607273950576 +0.07517798422431946 0.06782889338588716 0.7699537690625191 0.08703945450353623 +0.2853067775763274 0.1228208931246996 0.31304203769588473 0.2788303471760749 +0.15087566482126713 0.5014754391287565 0.0843575100249052 0.2632913598248958 +0.6022141028853655 0.08172318596410752 0.19297649110639095 0.12308719863772394 +0.09240926544916628 0.33721618807518483 0.2573095551319122 0.3130493318650722 +0.09992535357320308 0.7273700217866897 0.13961063111591338 0.033075347672104835 +0.03199196542453766 0.818729808879733 0.0907796551630497 0.05849761914491653 +0.7239499773235321 0.023248118911743165 0.02176792223405838 0.23103395435667037 +0.01065481271839142 0.2924013224058151 0.6685351251745224 0.028408821792602536 +0.04742532458496093 0.4178911080322266 0.4187618936767578 0.11592179699707032 +0.0568175029296875 0.827883716796875 0.036052017578125 0.07924679882812499 + +>tree0.2_453_NNNCYYCAGNNS +0.22261751245117187 0.2648582204589844 0.2985823210449219 0.2139421259765625 +0.17418421444702148 0.12554795037841798 0.26011324392700197 0.4401545770263672 +0.25581663034057617 0.2059959232788086 0.3503250207214355 0.18786245074462887 +0.06262328121948242 0.8133677090148926 0.03936896765136719 0.08464008062744141 +0.08668742279052735 0.3236436602478027 0.03681472619628906 0.5528541030578613 +0.08138485873413087 0.4210654094848633 0.1391026789855957 0.35844703005981443 +0.02019003656005859 0.9011640093383788 0.039885319732666014 0.03874493792724609 +0.7091945322875977 0.039823729949951175 0.10061951342773436 0.15036220532226563 +0.026450671569824218 0.0927950035095215 0.7860507073364258 0.09470356246948244 +0.200450481048584 0.2603617675476074 0.15355188845825196 0.3856357554626465 +0.11853156347656248 0.2727152698974609 0.4657500570068359 0.1430027403564453 +0.09017596875 0.44290334375000007 0.34810296875 0.1188175625 + +>tree0.2_454_MNCTNCTCRGGN +0.4755858125 0.4118586875 0.0447739375 0.0677813125 +0.1438035940234065 0.31487305851358177 0.3949698458490371 0.14632220261991025 +0.07441099964505435 0.6758335836227536 0.05777220978152752 0.19198337427276377 +0.08782675521624086 0.08609717446792126 0.2052150015138388 0.6208610248538255 +0.3192177431434393 0.3700496669157147 0.09179070125025512 0.2189418536310792 +0.029243302581548693 0.85805262058568 0.047849900020956994 0.06486200567293167 +0.06058249654662609 0.26707073897379635 0.0883280146868825 0.5840186516908408 +0.032610889377593995 0.6673463056609035 0.16028279666078094 0.13976002654141187 +0.2783876860044003 0.15635224442505835 0.49688501273560526 0.06837513016057015 +0.1032636765588522 0.06031565289092064 0.7996351948150396 0.0367542620806694 +0.10249883214569092 0.22034074559402467 0.5165285708580017 0.16063185540771482 +0.3248719692230224 0.07110614505004882 0.3182445050582886 0.2857772757644653 + +>tree0.2_455_AANTNCAGCCTNG +0.572648296875 0.157690234375 0.115987765625 0.15367360937500002 +0.527444098197937 0.11754209940338134 0.130368006401062 0.22464582627868657 +0.43570269862556454 0.14810084525108336 0.29131320272636413 0.12488321709060672 +0.07424451408433914 0.06706787265253068 0.06772905022668838 0.7909586795272827 +0.37180725973320006 0.20417440387225153 0.3520886710679531 0.07192977352261544 +0.06224312531757355 0.6762486353416444 0.056371639866828915 0.2051366742012501 +0.8157369903018474 0.04555738780927658 0.03938798121356964 0.0993177425467968 +0.02974645977640152 0.03896590571570396 0.7651776895329951 0.16610991134572028 +0.04369554698109626 0.8348068998310566 0.06484602927017212 0.05665141285681725 +0.049560988963127134 0.8524487544000149 0.045789444881677625 0.05220080979776382 +0.21137688678097727 0.0886076425948143 0.06423810995221138 0.6357772327654362 +0.21756673135566712 0.3826364273843765 0.14340891676425935 0.2563879083929062 +0.17531866503906252 0.059204390625 0.68048076953125 0.08499623828125 + +>tree0.2_456_NGGCTGCNGAGN +0.426 0.282 0.001 0.29 +0.19674322585880755 0.07586393468105793 0.640103164205432 0.08728145580232144 +0.16606400843924282 0.1277936507475972 0.6398201235440374 0.06632517529457808 +0.19775035524708776 0.5821373052107692 0.15891286255706102 0.061199651328735054 +0.052563656228398904 0.1223212654758878 0.21121100042656063 0.6139039417722356 +0.05269078805744089 0.2352689879786968 0.5974365463511608 0.11460369221022912 +0.034966514653394 0.8727164335058426 0.03774213526483067 0.05457392986439169 +0.20870442207773776 0.24804872951387055 0.266707844408676 0.2765380847490281 +0.09796522059419378 0.10393836313310638 0.7776959638663232 0.02040050368129276 +0.6060383540185634 0.07092541881785915 0.09467896087111904 0.2283573172878623 +0.1054175532544404 0.12096997058916838 0.7317620151945744 0.04185144633054547 +0.10666681449373625 0.22100347964475864 0.24912309393429943 0.4232059926682301 + +>tree0.2_457_NNNWTCGAMSGNN +0.07725 0.27675 0.21825 0.42775 +0.3855625 0.28209375 0.1554375 0.17671874999999998 +0.1664375 0.19634375 0.45984375 0.176875 +0.3410625 0.034125 0.11440625 0.5104062500000001 +0.10818750000000002 0.105375 0.25925 0.5272812499999999 +0.034875 0.89703125 0.03075 0.03734375 +0.021625 0.17996874999999998 0.76578125 0.032625 +0.53696875 0.041 0.2535 0.16853125000000002 +0.48590625 0.4555 0.026125 0.032468750000000005 +0.05221875 0.46996875 0.426625 0.0511875 +0.18215625 0.0656875 0.66415625 0.088125 +0.4484062499999999 0.214625 0.19215625 0.14487499999999998 +0.34409375 0.18815625 0.29975 0.16778125 + +>tree0.2_458_CNNAAGCRNYCG +0.064 0.8245 0.03925000000000001 0.07225 +0.3152381318359375 0.3548829716796875 0.099146166015625 0.2306702314453125 +0.2614435522460938 0.1318815546875 0.13047879223632813 0.4762039675292968 +0.5065287416992188 0.08411634912109375 0.1732989833984375 0.23611828295898435 +0.5953194057617188 0.2611267834472656 0.0866471123046875 0.056906699951171875 +0.08645190625 0.0610214033203125 0.8226296926269532 0.029897023193359372 +0.11115827441406252 0.7852766677246094 0.04886666137695311 0.054698341796874994 +0.41101342895507814 0.05119982348632812 0.4969076730957031 0.04086331127929688 +0.20378167431640623 0.3006087075195313 0.4336184538574218 0.06199027099609376 +0.05192462475585938 0.3736888732910156 0.1332525419921875 0.4411339755859375 +0.0782769609375 0.7655123125 0.0639635078125 0.09220034375 +0.0422975625 0.0362813125 0.8575386875 0.063882375 + +>tree0.2_459_NNNNCGCKTYCR +0.18493146484375 0.28937285546875 0.28940133984375 0.236294203125 +0.20869879711914063 0.4885926367187499 0.19408155859375 0.10850201171875 +0.09666993200683592 0.22939225399780275 0.43767301370239253 0.2363866533203125 +0.11275624343681336 0.28178371540260316 0.26896612547111515 0.3365017496509552 +0.030913077222824097 0.887824874988556 0.04695061702537537 0.03431059708595276 +0.07220979976463318 0.026155545040130616 0.8689546704826354 0.03267997023963928 +0.09331587684059144 0.597715884595871 0.24591340362930297 0.06304436685371398 +0.034508707725524904 0.13655821481132507 0.5431300236625671 0.28580217305374145 +0.1212581811695099 0.08701493755340577 0.183444934217453 0.6084113134193421 +0.12108870082855223 0.373416315284729 0.03673229761886597 0.46877237046432496 +0.045659451341629034 0.5677842417545319 0.2817724019508362 0.10478386069869994 +0.34260103124999997 0.023539 0.61463028125 0.01922965625 + +>tree0.2_460_ACTWNCGACG +0.903375 0.020375 0.01375 0.0625 +0.1989835625 0.664889890625 0.03490625 0.101220296875 +0.11899153125 0.0461953125 0.102921125 0.73188421875 +0.34414189062499995 0.05815975 0.159460640625 0.43823771875 +0.278052234375 0.191924328125 0.434453125 0.0955703125 +0.016635609375 0.907393015625 0.039065953125 0.0369054375 +0.11159882812500002 0.05419946875 0.8132094999999999 0.0209921875 +0.5907624375 0.1340390625 0.13768853125 0.13750996875 +0.20871875 0.5852656249999999 0.102203125 0.1038125 +0.0507578125 0.085921875 0.6093593749999999 0.2538984375 + +>tree0.2_461_YNCNNCGNCNN +0.0803275625 0.294832796875 0.1517485 0.473091140625 +0.11470640148830416 0.15885735463857653 0.3757452238984108 0.35067559568929674 +0.16747063185942174 0.5332959211590289 0.09174527563619614 0.2074959291665554 +0.2202219911789894 0.48591641903388505 0.12408477090263367 0.1699019694687128 +0.16469363205873966 0.3058273438224793 0.2585246631913185 0.2709251725656986 +0.06134337578177452 0.5277924395742416 0.23593324988627432 0.1748074703603983 +0.1967237321398258 0.12446258626484873 0.5054498885234594 0.17336188851392267 +0.332792373741746 0.13211097168862818 0.3610554124286175 0.17404171605551244 +0.20296597049403187 0.5705935524373054 0.137534977486372 0.08903052049326896 +0.2186596201109886 0.11636297085046768 0.47877874938678744 0.1861987532954216 +0.15403872218322753 0.12810009631347655 0.4081368726501465 0.3097008800811767 + +>tree0.2_462_SNCTCSCNSST +0.043529329917907714 0.3744498776855469 0.44934752576446535 0.1326732295532227 +0.2649275737113953 0.29313514349746705 0.26076333176612854 0.18117420509147644 +0.05477800370979309 0.8269229284152986 0.05333811499977112 0.06496482857513428 +0.1962301531028748 0.14548240528869627 0.04219623909187317 0.6160913077716826 +0.051424680282592776 0.7310873411808014 0.14059506702041624 0.07689488506698608 +0.06944510004043578 0.3428983585186004 0.4674406613864899 0.12021590281677244 +0.029169346479415895 0.7552954546165467 0.10676053844642638 0.10879021025085447 +0.26765560621261597 0.22028967942810063 0.3000852365913391 0.21196954870605467 +0.06213941835975646 0.5554476580410004 0.28979837027931216 0.09261555189704895 +0.08312799252319336 0.5164953067474365 0.2935605140686035 0.10683189065551758 +0.0363764296875 0.0722247109375 0.062410453125 0.8289884453125 + +>tree0.2_463_ANCKGNGNGTCCS +0.850481 0 0.035352 0.114167 +0.354226625 0.1586460625 0.3520340625 0.13509337500000002 +0.03225278125 0.7471213125 0.19769421875 0.0229319375 +0.2021465625 0.030630187500000003 0.4364568125 0.3307664375 +0.020092296875 0.059064296875 0.911613265625 0.0092302421875 +0.3210518984375 0.25155190625 0.1762726640625 0.2511235625 +0.033783312499999996 0.03096784375 0.9049455078125 0.0303035390625 +0.216522625 0.4699452578125 0.2552305703125 0.05830121875 +0.037515671875 0.033205671874999995 0.87807 0.0512086484375 +0.05730304687499999 0.191015390625 0.12067240625 0.6310090234375 +0.0962945625 0.8399767734375 0.0306209375 0.0331075703125 +0.0192941171875 0.7701812265625001 0.0440025 0.166522421875 +0.016106015625 0.43849975 0.4974157890625 0.047978640625 + +>tree0.2_464_TCNCGNCTCNNNNN +0.185822 0.044819 0.069022 0.700337 +0.11391418078613282 0.5918356832885743 0.14714225952148438 0.14710793719482423 +0.18392563288283348 0.3345470392756462 0.31479576974368095 0.16673119665122033 +0.10410947663787008 0.6394797025237232 0.09867420347758384 0.1577364666386172 +0.18981072635468096 0.09312153874430806 0.6330781532307119 0.08398862490409613 +0.13704943464311212 0.2759276471741572 0.16412947904173283 0.4228934861693382 +0.07284590506838262 0.7488804388450756 0.09628268962852655 0.0820067905377671 +0.06281257213862985 0.09612335474338382 0.0711560497797355 0.7699086660486758 +0.0279420113652274 0.7503123819328026 0.07337070221669972 0.14837484969598053 +0.26590574900782854 0.4708807202995718 0.07258230194433032 0.1906311408932656 +0.23122666710638257 0.3211534402691275 0.2281611934160888 0.21946191310903437 +0.1653459188279733 0.4884513989349901 0.24981646865326168 0.09638465275672824 +0.19834846255666017 0.20614857736894487 0.4094144908958077 0.18610184181872008 +0.17773560852050782 0.29091929919433596 0.29056057348632813 0.24078830126953124 + +>tree0.2_465_SNCRCGTCSNSGN +0.11139925 0.44789625 0.4106 0.0301045 +0.22440814782714844 0.10497007202148435 0.42298601318359375 0.24763577160644532 +0.044986988216400146 0.8593074119300842 0.06903875218582153 0.026666644420623775 +0.4891480984344483 0.058714190237045286 0.43376529652786255 0.018372283344268797 +0.08290413806247712 0.8035239766712189 0.0533899276599884 0.06018167955493927 +0.03754136966228485 0.11307640858364104 0.833219592051506 0.016162552384376527 +0.111949027384758 0.04011941073131561 0.04069173549842835 0.8072401302967072 +0.023873341304779055 0.6885804083051682 0.2523357796468735 0.03521055885028839 +0.06457026192665101 0.4664636633625031 0.3071416407079696 0.16182446716499327 +0.357931334159851 0.3751402418174744 0.13229947976016998 0.13462888977146148 +0.093902992852211 0.3969589257211686 0.4137029612674713 0.09543504982089995 +0.22439914831542968 0.159096268907547 0.5388491004066467 0.07765550415802003 +0.2145765 0.4927425 0.0470265 0.2456545 + +>tree0.2_466_NCNCNYNCGSCNNN +0.18564362713623048 0.3003025737915039 0.2253637504272461 0.28865485394287116 +0.11913847716553508 0.5384483979723602 0.1905951340688914 0.1517002129009515 +0.2777405811606143 0.14348398019666783 0.43468042600201445 0.1442202993765883 +0.0879809890646385 0.627403595959826 0.09714496043288708 0.18746964088919665 +0.2029214881982 0.21264465945118968 0.2384090324842485 0.34602601610087863 +0.06470619992529439 0.40971829890249767 0.14047736266834637 0.3850979460020952 +0.19205998399019705 0.43511160452298614 0.28896442719575344 0.08386387182448944 +0.0514234752017241 0.6319692174221663 0.05429698409389331 0.26231030980736225 +0.11060021143760648 0.1275685888161352 0.5687840343356877 0.19304449835325127 +0.04922185898021422 0.36896059568443335 0.44434414387216137 0.13747266571096609 +0.08398175786473114 0.5483741720136004 0.13570099893021675 0.23194370191234467 +0.21635161730876845 0.14200397557746364 0.1965080584221313 0.4450029968360949 +0.07823641308220802 0.4077918015429909 0.3160524181099925 0.1979259917768384 +0.11510646402654426 0.4158845486002565 0.16017283194621468 0.3088356327732541 + +>tree0.2_467_CYCTGTSSYCCNGC +0.06086809374999999 0.7508742500000001 0.062527140625 0.12573059375 +0.07916918996810912 0.4596478642311097 0.057719844959259026 0.40346308046340945 +0.055421426202774064 0.7363104678840637 0.08907126204490663 0.11919703445816042 +0.10177654969596864 0.09210290900421143 0.0708551827545166 0.7352655557174683 +0.01628780436897278 0.08383618636703491 0.8839497755393981 0.015926216400146485 +0.05465595409202576 0.10282410654258728 0.27757565890884406 0.5649443965988159 +0.05377312857055663 0.5423156040458679 0.3456536078224182 0.05825762135314942 +0.14589855311012268 0.2824693599205017 0.4962988111228943 0.07533306739616395 +0.020326281969070437 0.5163732064304352 0.03258094259643554 0.4307196689853669 +0.044130173198699954 0.7964923195381164 0.09040085124206544 0.06897681655883789 +0.07806699282073973 0.7693885322799683 0.0804429200744629 0.07210151690673827 +0.2106059249572754 0.38491156613159183 0.2724181335754394 0.1320644482116699 +0.25061716690063474 0.1837915178222656 0.5260325180664063 0.0395585307006836 +0.07082 0.6940425 0.168289 0.06684899999999999 + +>tree0.2_468_CGNGWRNSTGSRGNC +0.097361484375 0.57534875 0.267004359375 0.060285796875000006 +0.12090457812500002 0.10035542333984374 0.5532392358398438 0.2255007465820313 +0.13517877827835084 0.3587245960350037 0.2812736206588745 0.22482311794662477 +0.15940103665511682 0.06847099622168393 0.7346041988197807 0.03752370294381678 +0.2847518427772373 0.13392570014374333 0.1042210036452096 0.4771014618319106 +0.3243037123919949 0.11505495118103362 0.4903689768854883 0.07027245965694635 +0.13515500562917812 0.1936930921242237 0.43712835950114015 0.23403136406570485 +0.06811694902561233 0.43701569737862794 0.4535405380607489 0.04133462969003804 +0.09415022897334956 0.25874722748905415 0.10487868756926992 0.5422238981822729 +0.14278350488404185 0.05551666324095987 0.7554804637892265 0.0462192796865087 +0.13294880419587715 0.4077408319977913 0.37683257215049865 0.0824778180680778 +0.41853354329925774 0.06670165835026651 0.4218012095918655 0.09296363366035368 +0.2303215852279663 0.1014149313354492 0.5164186199569702 0.15184480907440184 +0.10718159375 0.381252896484375 0.3237223427734375 0.1878430537109375 +0.16927387500000002 0.59761475 0.104099375 0.129011625 + +>tree0.2_469_CARCCGKCGCCYN +0.258696 0.741304 0 0 +0.6433495 0.0565955 0.026069 0.273986 +0.28262012109375 0.1200035 0.47889148828125006 0.11860980078125 +0.25400235546875 0.6397614658203126 0.073774513671875 0.03246138671875 +0.1904112431640625 0.6870031806640625 0.08578390625 0.0368016494140625 +0.0395438837890625 0.20105228808593748 0.6670673603515626 0.0923363017578125 +0.054722177734375 0.101380326171875 0.5305807041015624 0.31331682519531245 +0.041418852539062495 0.884009892578125 0.031576576171875 0.04299453515625 +0.118771853515625 0.099664416015625 0.677544599609375 0.10401917578125 +0.0534967060546875 0.81077721484375 0.0662934169921875 0.0694325537109375 +0.0878540986328125 0.765019828125 0.059835939453125 0.087290154296875 +0.07648546679687501 0.450757201171875 0.032791626953125 0.43996567578125 +0.21761978515625 0.26099780078125 0.4319580976562501 0.08942449609375 + +>tree0.2_470_CYNCNGCGCNCC +0 0.9159385 0.08406150000000001 0 +0.117699572265625 0.47417560644531254 0.08678288085937501 0.321341517578125 +0.26357833006069065 0.1397222981759608 0.4243014919581413 0.17239795776203273 +0.04692620752167702 0.7142915351383388 0.11636387910777332 0.12241830469691752 +0.22522827839794757 0.24721020886835457 0.134338471342206 0.39322690580394865 +0.04717925043734908 0.06727892158734798 0.822105856436044 0.06343596672379971 +0.05647808560863138 0.7792726253044009 0.10328062572702766 0.06096865911868214 +0.07992249833607673 0.11238366774997116 0.6289863803035916 0.17870750026232002 +0.07667501536029578 0.6299783237315416 0.06507981157696247 0.22832921979349852 +0.1737973263320923 0.3511439400587082 0.13350877948856354 0.3414875337514877 +0.06151161419677735 0.7368805176391602 0.08185585266113281 0.11974818786621096 +0.05777911486816406 0.6675798502197265 0.14420291882324218 0.1304380690917969 + +>tree0.2_471_KNCSNGAGCCCR +0.047106 0 0.617604 0.33529 +0.37945593002015354 0.19797382789242268 0.31968931094950437 0.1028811210206151 +0.021547801633402704 0.8934741323898285 0.04376246609495581 0.041215493684262035 +0.09223580115957558 0.4124574225657284 0.3408321039738059 0.1544747900953293 +0.034940253835901616 0.3139189640911967 0.3733235778605491 0.27781729512874787 +0.18338257723893223 0.044074054352641105 0.7406950288904458 0.03184835384839773 +0.5457780848789513 0.17179333179958164 0.11087826553347709 0.17155036028225715 +0.1293485195994824 0.0475485084349364 0.7505815938452929 0.07251745721885562 +0.04405601166717709 0.5962350881771594 0.28012292056661847 0.07958987028644979 +0.08419653005906938 0.5742856836189628 0.20122852667860688 0.14028928298304974 +0.07222499951171875 0.7486413691406251 0.06026851196289062 0.11886502880859376 +0.35474901660156255 0.08043726904296875 0.508145908203125 0.05666779345703125 + +>tree0.2_472_KSMNGTGANCNNC +0.0659865635960698 0.07951810076105595 0.2938056196173429 0.5606894134255052 +0.06377602567601204 0.4429004081664681 0.36114825466471906 0.13217539218229055 +0.36154931140553953 0.45069402740931513 0.12259947374743224 0.06513344437241554 +0.2443655860612393 0.3353462316443324 0.26241547746634486 0.15790394240695238 +0.08021548445439339 0.09610613629934192 0.7277191819921434 0.0959260206403136 +0.09854503699803352 0.14250277127298713 0.23763229366758468 0.5213197700064183 +0.05735332718670368 0.09293646527960896 0.8141556953955591 0.03555452555212378 +0.6673380832342207 0.05648924850547313 0.10082297237578036 0.17535761733943225 +0.1039820905572772 0.24840449812740087 0.3045966397345364 0.3430167809428871 +0.08229826095682383 0.66422287178123 0.08549175857329369 0.1679870175780654 +0.07819779984265565 0.4913060500366091 0.1745704284838438 0.25592474695670603 +0.03428216299381852 0.2427450209968388 0.3975293456270993 0.3254435175894797 +0.04412769140625 0.84354496484375 0.0744549609375 0.03790369140625 + diff --git a/exe/mkindex.hs b/exe/mkindex.hs deleted file mode 100644 --- a/exe/mkindex.hs +++ /dev/null @@ -1,11 +0,0 @@ -module Main where - -import Bio.Seq.IO (mkIndex) -import Shelly -import qualified Data.Text as T -import System.Environment - -main :: IO () -main = do [inDir, outF] <- getArgs - fls <- shelly . lsT . fromText . T.pack $ inDir - mkIndex (map T.unpack fls) outF diff --git a/exe/viewSeq.hs b/exe/viewSeq.hs deleted file mode 100644 --- a/exe/viewSeq.hs +++ /dev/null @@ -1,15 +0,0 @@ -module Main where - -import qualified Data.ByteString.Char8 as B -import Bio.Seq -import Bio.Seq.IO -import System.Environment - -main :: IO () -main = do - [fl, chr, start, end] <- getArgs - g <- pack fl - s <- getSeqs g [(B.pack chr, read start, read end)] :: IO [Either String (DNA IUPAC)] - case head s of - Left err -> error err - Right x -> B.putStrLn . toBS $ x diff --git a/src/Bio/ChIPSeq.hs b/src/Bio/ChIPSeq.hs --- a/src/Bio/ChIPSeq.hs +++ b/src/Bio/ChIPSeq.hs @@ -2,12 +2,12 @@ {-# LANGUAGE OverloadedStrings #-} {-# LANGUAGE BangPatterns #-} module Bio.ChIPSeq - ( rpkmBed + ( monoColonalize + , rpkmBed , rpkmSortedBed - , monoColonalize - , profiling - , profilingCoverage + , rpkmBinBed , rpkmBam + , rpgcBinBed , tagCountDistr , peakCluster ) where @@ -16,9 +16,7 @@ import qualified Bio.SamTools.BamIndex as BI import Control.Monad (liftM, forM_, forM) import Control.Monad.Primitive (PrimMonad) -import Control.Monad.Trans.Class (lift) -import Data.Conduit -import qualified Data.Conduit.List as CL +import Conduit import Data.Function (on) import qualified Data.Foldable as F import qualified Data.HashMap.Strict as M @@ -79,7 +77,7 @@ => Sorted (V.Vector b) -> Sink BED m (v Double) rpkmSortedBed (Sorted regions) = do vec <- lift $ GM.replicate l 0 - n <- CL.foldM (count vec) (0 :: Int) + n <- foldMC (count vec) (0 :: Int) let factor = fromIntegral n / 1e9 lift $ liftM (G.imap (\i x -> x / factor / (fromIntegral . size) (regions V.! i))) $ G.unsafeFreeze vec @@ -89,7 +87,7 @@ p | _strand tag == Just True = chromStart tag | _strand tag == Just False = chromEnd tag - 1 | otherwise = error "Unkown strand" - xs = concat . snd . unzip $ + xs = concat $ IM.elems $ IM.containing (M.lookupDefault IM.empty chr intervalMap) p addOne v xs return $ succ nTags @@ -102,11 +100,11 @@ -- | divide each region into consecutive bins, and count tags for each bin. The -- total number of tags is also returned -profiling :: (PrimMonad m, G.Vector v Int, BEDLike b) - => Int -- ^ bin size - -> [b] -- ^ regions - -> Sink BED m ([v Int], Int) -profiling k beds = do +rpkmBinBed :: (Num a, PrimMonad m, G.Vector v a, BEDLike b) + => Int -- ^ bin size + -> [b] -- ^ regions + -> Sink BED m ([v a], Int) +rpkmBinBed k beds = do initRC <- lift $ forM beds $ \bed -> do let start = chromStart bed end = chromEnd bed @@ -124,11 +122,13 @@ let p | strand == Just True = start | strand == Just False = end - 1 | otherwise = error "profiling: unkown strand" - overlaps = concat . snd . unzip $ + overlaps = concat $ IM.elems $ IM.containing (M.lookupDefault IM.empty chr intervalMap) p lift $ forM_ overlaps $ \x -> do let (v, idxFn) = vs `G.unsafeIndex` x - i = idxFn p + i = let i' = idxFn p + l = GM.length v + in if i' >= l then l - 1 else i' GM.unsafeRead v i >>= GM.unsafeWrite v i . (+1) sink (nTags+1) vs @@ -136,15 +136,16 @@ return (rc, nTags) intervalMap = bedToTree (++) $ zip beds $ map return [0..] -{-# INLINE profiling #-} +{-# INLINE rpkmBinBed #-} --- | divide each region into consecutive bins, and count tags for each bin. The --- total number of tags is also returned -profilingCoverage :: (PrimMonad m, G.Vector v Int, BEDLike b1, BEDLike b2) +-- | divide each region into consecutive bins, and compute +-- reads per genome coverage (RPGC) for each bin. The +-- total number of tags is also returned. +rpgcBinBed :: (Num a, PrimMonad m, G.Vector v a, BEDLike b1, BEDLike b2) => Int -- ^ bin size -> [b1] -- ^ regions - -> Sink b2 m ([v Int], Int) -profilingCoverage k beds = do + -> Sink b2 m ([v a], Int) +rpgcBinBed k beds = do initRC <- lift $ forM beds $ \bed -> do let start = chromStart bed end = chromEnd bed @@ -162,12 +163,15 @@ let chr = chrom bed start = chromStart bed end = chromEnd bed - overlaps = concat . snd . unzip $ IM.intersecting + overlaps = concat $ IM.elems $ IM.intersecting (M.lookupDefault IM.empty chr intervalMap) $ IM.IntervalCO start end lift $ forM_ overlaps $ \x -> do let (v, idxFn) = vs `G.unsafeIndex` x - lo = idxFn start - hi = idxFn end + lo = let i = idxFn start + in if i < 0 then 0 else i + hi = let i = idxFn end + l = GM.length v + in if i >= l then l - 1 else i forM_ [lo..hi] $ \i -> GM.unsafeRead v i >>= GM.unsafeWrite v i . (+1) sink (nTags+1) vs @@ -176,14 +180,14 @@ return (rc, nTags) intervalMap = bedToTree (++) $ zip beds $ map return [0..] -{-# INLINE profilingCoverage #-} +{-# INLINE rpgcBinBed #-} -- | calculate RPKM using BAM file (*.bam) and its index file (*.bam.bai), using -- constant space rpkmBam :: BEDLike b => FilePath -> Conduit b IO Double rpkmBam fl = do - nTags <- lift $ readBam fl $$ CL.foldM (\acc bam -> return $ + nTags <- lift $ readBam fl $$ foldMC (\acc bam -> return $ if isUnmap bam then acc else acc + 1) 0.0 handle <- lift $ BI.open fl conduit nTags handle @@ -198,7 +202,7 @@ rc <- lift $ viewBam h (chr, s, e) $$ readCount s e yield $ rc * 1e9 / n / fromIntegral (e-s) conduit n h - readCount l u = CL.foldM f 0.0 + readCount l u = foldMC f 0.0 where f acc bam = do let p1 = fromIntegral . fromJust . position $ bam rl = fromIntegral . fromJust . queryLength $ bam @@ -237,7 +241,7 @@ -> Int -- ^ radius -> Int -- ^ cutoff -> Source m BED -peakCluster peaks r th = mergeBedWith mergeFn peaks' $= CL.filter g +peakCluster peaks r th = mergeBedWith mergeFn peaks' $= filterC g where peaks' = map f peaks f b = let chr = chrom b diff --git a/src/Bio/Data/Bam.hs b/src/Bio/Data/Bam.hs --- a/src/Bio/Data/Bam.hs +++ b/src/Bio/Data/Bam.hs @@ -21,8 +21,7 @@ import Bio.SamTools.BamIndex import Control.Monad.Trans.Class (lift) import qualified Data.ByteString.Char8 as B -import Data.Conduit (Source, Conduit, yield) -import qualified Data.Conduit.List as CL +import Conduit (Source, Conduit, yield, concatMapC) import Data.Maybe (fromJust) import Bio.Data.Bed @@ -37,7 +36,7 @@ {-# INLINE readBam #-} bamToBed :: Monad m => Conduit Bam1 m BED -bamToBed = CL.mapMaybe f +bamToBed = concatMapC f where f bam =case targetName bam of Just chr -> @@ -52,7 +51,7 @@ viewBam :: IdxHandle -> (B.ByteString, Int, Int) -> Source IO Bam1 viewBam handle (chr, s, e) = case lookupTarget (idxHeader handle) chr of Nothing -> return () - Just chrId -> do + Just chrId -> do q <- lift $ query handle chrId (fromIntegral s,fromIntegral e) go q where diff --git a/src/Bio/Data/Bed.hs b/src/Bio/Data/Bed.hs --- a/src/Bio/Data/Bed.hs +++ b/src/Bio/Data/Bed.hs @@ -46,8 +46,7 @@ import Control.Arrow ((***)) import Control.Monad.State.Strict import qualified Data.ByteString.Char8 as B -import Data.Conduit -import qualified Data.Conduit.List as CL +import Conduit import Data.Default.Class (Default(..)) import Data.Function (on) import qualified Data.Foldable as F @@ -98,7 +97,7 @@ -- | non-streaming version hReadBed' :: MonadIO m => Handle -> m [b] - hReadBed' h = hReadBed h $$ CL.consume + hReadBed' h = hReadBed h $$ sinkList {-# INLINE hReadBed' #-} readBed :: MonadIO m => FilePath -> Source m b @@ -109,7 +108,7 @@ -- | non-streaming version readBed' :: MonadIO m => FilePath -> m [b] - readBed' fl = readBed fl $$ CL.consume + readBed' fl = readBed fl $$ sinkList {-# INLINE readBed' #-} hWriteBed :: MonadIO m => Handle -> Sink b m () @@ -121,7 +120,7 @@ {-# INLINE hWriteBed #-} hWriteBed' :: MonadIO m => Handle -> [b] -> m () - hWriteBed' handle beds = CL.sourceList beds $$ hWriteBed handle + hWriteBed' handle beds = yieldMany beds $$ hWriteBed handle {-# INLINE hWriteBed' #-} writeBed :: MonadIO m => FilePath -> Sink b m () @@ -131,7 +130,7 @@ {-# INLINE writeBed #-} writeBed' :: MonadIO m => FilePath -> [b] -> m () - writeBed' fl beds = CL.sourceList beds $$ writeBed fl + writeBed' fl beds = yieldMany beds $$ writeBed fl {-# INLINE writeBed' #-} {-# MINIMAL asBed, fromLine, toLine, chrom, chromStart, chromEnd #-} @@ -238,7 +237,7 @@ -- | return records in A that are overlapped with records in B intersectSortedBed :: (BEDLike b1, BEDLike b2) => [b1] -> Sorted (V.Vector b2) -> [b1] -intersectSortedBed a (Sorted b) = filter (not . null . f) a +intersectSortedBed a (Sorted b) = filter (not . IM.null . f) a where f bed = let chr = chrom bed interval = IM.IntervalCO (chromStart bed) $ chromEnd bed @@ -263,7 +262,7 @@ where f bed = let chr = chrom bed interval = IM.IntervalCO (chromStart bed) $ chromEnd bed - in (bed, fn $ map snd $ IM.intersecting (M.lookupDefault IM.empty chr tree) interval) + in (bed, fn $ IM.elems $ IM.intersecting (M.lookupDefault IM.empty chr tree) interval) tree = sortedBedToTree const . Sorted . V.toList . V.zip b $ b {-# INLINE intersectSortedBedWith #-} @@ -407,7 +406,7 @@ {-# INLINE fetchSeq #-} fetchSeq' :: (BioSeq DNA a, MonadIO m) => Genome -> [BED] -> m [Either String (DNA a)] -fetchSeq' g beds = CL.sourceList beds $= fetchSeq g $$ CL.consume +fetchSeq' g beds = yieldMany beds $= fetchSeq g $$ sinkList {-# INLINE fetchSeq' #-} -- * BED3 format diff --git a/src/Bio/Data/BigWig.hs b/src/Bio/Data/BigWig.hs deleted file mode 100644 --- a/src/Bio/Data/BigWig.hs +++ /dev/null @@ -1,32 +0,0 @@ -module Bio.Data.BigWig - ( module Data.BBI.BigWig - , accumScores - , normalizedScores - ) where - -import Data.BBI.BigWig -import Data.Conduit -import qualified Data.Conduit.List as CL -import Bio.Data.Bed - --- | for each BED region, return total scores of all wig records overlapped with it -accumScores :: BEDLike b => BWFile -> Conduit b IO Double -accumScores bwF = CL.mapM (helper bwF) -{-# INLINE accumScores #-} - --- | for each BED region, return normalized scores (divided by the length) of --- all wig records overlapped with it -normalizedScores :: BEDLike b => BWFile -> Conduit b IO Double -normalizedScores bwF = CL.mapM $ \bed -> do - x <- helper bwF bed - return $ x / (fromIntegral . size) bed -{-# INLINE normalizedScores #-} - -helper :: BEDLike b => BWFile -> b -> IO Double -helper bwF bed = queryBWFile bwF (chr, start, end) $$ CL.fold f 0.0 - where - f acc (_, s, e, v) = acc + fromIntegral (e - s) * v - chr = chrom bed - start = chromStart bed - end = chromEnd bed -{-# INLINE helper #-} diff --git a/src/Bio/Data/Fasta.hs b/src/Bio/Data/Fasta.hs --- a/src/Bio/Data/Fasta.hs +++ b/src/Bio/Data/Fasta.hs @@ -22,8 +22,7 @@ import Bio.Seq import Control.Monad.State.Lazy import qualified Data.ByteString.Char8 as B -import Data.Conduit -import qualified Data.Conduit.List as CL +import Conduit import System.IO class FastaLike f where @@ -37,7 +36,7 @@ -- | non-stream version, read whole file in memory readFasta' :: FilePath -> IO [f] - readFasta' fl = readFasta fl $$ CL.consume + readFasta' fl = readFasta fl $$ sinkList -- writeFasta :: FilePath -> [f] -> IO () {-# MINIMAL fromFastaRecord #-} @@ -54,7 +53,7 @@ loop [] handle where loop :: [B.ByteString] -> Handle -> Source IO (B.ByteString, [B.ByteString]) - loop acc h = do + loop acc h = do eof <- liftIO $ hIsEOF h if eof then liftIO (hClose h) >> output acc else do l <- liftIO $ B.hGetLine h diff --git a/src/Bio/GO.hs b/src/Bio/GO.hs --- a/src/Bio/GO.hs +++ b/src/Bio/GO.hs @@ -9,7 +9,6 @@ import qualified Data.Text as T import Data.Text.Encoding (decodeUtf8) import qualified Data.ByteString.Char8 as B -import Data.Foldable (foldl') import qualified Data.HashMap.Strict as M import Data.Maybe diff --git a/src/Bio/GO/GREAT.hs b/src/Bio/GO/GREAT.hs --- a/src/Bio/GO/GREAT.hs +++ b/src/Bio/GO/GREAT.hs @@ -7,7 +7,7 @@ import Control.Monad.Primitive import qualified Data.ByteString.Char8 as B -import Data.Conduit +import Conduit import Data.Default.Class import qualified Data.HashMap.Strict as M import qualified Data.IntervalMap as IM @@ -41,12 +41,14 @@ getRegulatoryDomains (BasalPlusExtension up dw ext) gs = bedToTree undefined $ flip map basal $ \(BED3 chr s e, go) -> let intervals = fromJust . M.lookup chr $ basalTree - s' = case IM.intersecting intervals (IM.OpenInterval (s - ext) s) of - [] -> s - ext - x -> min s (maximum $ map (upperBound . fst) x) - e' = case IM.intersecting intervals (IM.OpenInterval e (e + ext)) of - [] -> e + ext - x -> max e (minimum $ map (lowerBound . fst) x) + s' = let im = IM.intersecting intervals $ IM.OpenInterval (s-ext) s + in if IM.null im + then s - ext + else min s $ maximum $ map upperBound $ IM.keys im + e' = let im = IM.intersecting intervals $ IM.OpenInterval e (e+ext) + in if IM.null im + then e + ext + else max e $ minimum $ map lowerBound $ IM.keys im in (BED3 chr s' e', go) where basalTree = bedToTree (error "encounter redundant regions") basal @@ -69,7 +71,7 @@ let chr = chrom bed s = chromStart bed e = chromEnd bed - terms = nub' . concatMap snd . IM.intersecting + terms = nub' . concat . IM.elems . IM.intersecting (M.lookupDefault IM.empty chr tree) $ IM.IntervalCO s e go (n+1) $ foldl (\acc t -> M.insertWith (+) t 1 acc) termCount terms _ -> return (n, termCount) diff --git a/src/Bio/GO/Parser.hs b/src/Bio/GO/Parser.hs --- a/src/Bio/GO/Parser.hs +++ b/src/Bio/GO/Parser.hs @@ -5,7 +5,6 @@ ) where import Control.Arrow ((&&&)) -import Control.Applicative ((<$>)) import qualified Data.ByteString.Lazy.Char8 as L import qualified Data.HashMap.Strict as M import Data.Maybe diff --git a/src/Bio/Motif.hs b/src/Bio/Motif.hs --- a/src/Bio/Motif.hs +++ b/src/Bio/Motif.hs @@ -14,7 +14,7 @@ , scores' , score , optimalScore - , CDF + , CDF(..) , cdf , cdf' , scoreCDF @@ -35,7 +35,7 @@ import Control.Arrow ((&&&)) import Control.Monad.State.Lazy import qualified Data.ByteString.Char8 as B -import Data.Conduit +import Conduit import Data.Double.Conversion.ByteString (toShortest) import Data.Default.Class import Data.List (sortBy, foldl') @@ -224,7 +224,7 @@ pValueToScore :: Double -> Bkgd -> PWM -> Double pValueToScore p bg pwm = cdf' (scoreCDF bg pwm) $ 1 - p -newtype CDF = CDF (V.Vector (Double, Double)) +newtype CDF = CDF (V.Vector (Double, Double)) deriving (Read, Show) -- P(X <= x) cdf :: CDF -> Double -> Double diff --git a/src/Bio/Motif/Alignment.hs b/src/Bio/Motif/Alignment.hs --- a/src/Bio/Motif/Alignment.hs +++ b/src/Bio/Motif/Alignment.hs @@ -1,21 +1,18 @@ {-# LANGUAGE Rank2Types #-} +{-# LANGUAGE OverloadedStrings #-} {-# LANGUAGE FlexibleContexts #-} {-# LANGUAGE BangPatterns #-} - module Bio.Motif.Alignment ( alignment , alignmentBy , linPenal , quadPenal , cubePenal - , mergePWM - , buildTree - , progressiveMerging + , expPenal + , AlignFn ) where -import AI.Clustering.Hierarchical import qualified Data.Vector.Generic as G -import qualified Data.Vector as V import qualified Data.Vector.Unboxed as U import qualified Data.Matrix.Unboxed as M @@ -25,32 +22,41 @@ -- | penalty function takes the gaps number as input, return penalty value type PenalFn = Int -> Double -type DistanceFn = (G.Vector v Double, G.Vector v (Double, Double)) => v Double -> v Double -> Double +type DistanceFn = forall v. (G.Vector v Double, G.Vector v (Double, Double)) + => v Double -> v Double -> Double -alignment :: PWM -> PWM -> (Double, (PWM, PWM, Int)) -alignment = alignmentBy jsd quadPenal +type AlignFn = PWM + -> PWM + -> (Double, (Bool, Int)) -- ^ (distance, (on same direction, + -- position w.r.t. the first pwm)) +alignment :: AlignFn +alignment = alignmentBy jsd $ quadPenal 0.15 + -- | linear penalty -linPenal :: PenalFn -linPenal n = fromIntegral n * 0.3 +linPenal :: Double -> PenalFn +linPenal x n = fromIntegral n * x -- | quadratic penalty -quadPenal :: PenalFn -quadPenal n = fromIntegral (n ^ (2 :: Int)) * 0.15 +quadPenal :: Double -> PenalFn +quadPenal x n = fromIntegral (n ^ (2 :: Int)) * x -- | cubic penalty -cubePenal :: PenalFn -cubePenal n = fromIntegral (n ^ (3 :: Int)) * 0.01 +cubePenal :: Double -> PenalFn +cubePenal x n = fromIntegral (n ^ (3 :: Int)) * x -- | exponentail penalty -expPenal :: PenalFn -expPenal n = fromIntegral (2^n :: Int) * 0.01 +expPenal :: Double -> PenalFn +expPenal x n = fromIntegral (2^n :: Int) * x -- internal gaps are not allowed, larger score means larger distance, so the smaller the better -alignmentBy :: DistanceFn -> PenalFn -> PWM -> PWM -> (Double, (PWM, PWM, Int)) +alignmentBy :: DistanceFn -- ^ compute the distance between two aligned pwms + -> PenalFn -- ^ gap penalty + -> AlignFn alignmentBy fn pFn m1 m2 - | fst forwardAlign <= fst reverseAlign = (fst forwardAlign, (m1, m2, snd forwardAlign)) - | otherwise = (fst reverseAlign, (m1, m2', snd reverseAlign)) + | fst forwardAlign <= fst reverseAlign = + (fst forwardAlign, (True, snd forwardAlign)) + | otherwise = (fst reverseAlign, (False, snd reverseAlign)) where forwardAlign | d1 < d2 = (d1,i1) | otherwise = (d2,-i2) @@ -94,26 +100,3 @@ n1 = length s1 n2 = length s2 {-# INLINE alignmentBy #-} - -mergePWM :: (PWM, PWM, Int) -> PWM -mergePWM (m1, m2, i) | i >= 0 = PWM Nothing (M.fromRows $ take i s1 ++ zipWith f (drop i s1) s2 ++ drop (n1 - i) s2) - | otherwise = PWM Nothing (M.fromRows $ take (-i) s2 ++ zipWith f (drop (-i) s2) s1 ++ drop (n2 + i) s1) - where - f = G.zipWith (\x y -> (x+y)/2) - s1 = M.toRows . _mat $ m1 - s2 = M.toRows . _mat $ m2 - n1 = length s1 - n2 = length s2 - -progressiveMerging :: Dendrogram Motif -> PWM -progressiveMerging t = case t of - Branch _ _ left right -> f (progressiveMerging left) $ progressiveMerging right - Leaf a -> _pwm a - where - f a b = mergePWM $! snd $ alignment a b - --- | build a guide tree from a set of motifs -buildTree :: [Motif] -> Dendrogram Motif -buildTree motifs = hclust Average (V.fromList motifs) δ - where - δ (Motif _ x) (Motif _ y) = fst $ alignment x y diff --git a/src/Bio/Motif/Merge.hs b/src/Bio/Motif/Merge.hs new file mode 100644 --- /dev/null +++ b/src/Bio/Motif/Merge.hs @@ -0,0 +1,185 @@ +{-# LANGUAGE OverloadedStrings #-} +{-# LANGUAGE FlexibleContexts #-} +module Bio.Motif.Merge + ( mergePWM + , mergePWMWeighted + , dilute + , trim + , mergeTree + , mergeTreeWeighted + , iterativeMerge + , buildTree + )where + +import AI.Clustering.Hierarchical hiding (size) +import Control.Arrow (first) +import Control.Monad (forM_, when) +import Control.Monad.ST (runST, ST) +import qualified Data.ByteString.Char8 as B +import Data.List (dropWhileEnd) +import qualified Data.Matrix.Symmetric.Mutable as MSU +import qualified Data.Matrix.Unboxed as MU +import Data.Maybe +import qualified Data.Vector as V +import qualified Data.Vector.Mutable as VM +import qualified Data.Vector.Unboxed as U + +import Bio.Motif +import Bio.Motif.Alignment +import Bio.Utils.Functions (kld) + +mergePWM :: (PWM, PWM, Int) -> PWM +mergePWM (m1, m2, shift) | shift >= 0 = merge shift (_mat m1) $ _mat m2 + | otherwise = merge (-shift) (_mat m2) $ _mat m1 + where + merge s a b = PWM Nothing $ MU.fromRows $ loop 0 + where + n1 = MU.rows a + n2 = MU.rows b + loop i | i' < 0 || (i < n1 && i' >= n2) = MU.takeRow a i : loop (i+1) + | i < n1 && i' < n2 = f (MU.takeRow a i) (MU.takeRow b i') : loop (i+1) + | i >= n1 && i' < n2 = MU.takeRow b i' : loop (i+1) + | otherwise = [] + where + i' = i - s + f = U.zipWith (\x y -> (x+y)/2) + +mergePWMWeighted :: (PWM, [Int]) -- ^ pwm and weights at each position + -> (PWM, [Int]) + -> Int -- ^ shift + -> (PWM, [Int]) +mergePWMWeighted m1 m2 shift + | shift >= 0 = merge shift (first _mat m1) $ first _mat m2 + | otherwise = merge (-shift) (first _mat m2) $ first _mat m1 + + where + merge s (p1,w1) (p2,w2) = first (PWM Nothing . MU.fromRows) $ unzip $ loop 0 + where + a = V.fromList $ zip (MU.toRows p1) w1 + b = V.fromList $ zip (MU.toRows p2) w2 + n1 = V.length a + n2 = V.length b + loop i | i' < 0 || (i < n1 && i' >= n2) = a V.! i : loop (i+1) + | i < n1 && i' < n2 = f (a V.! i) (b V.! i') : loop (i+1) + | i >= n1 && i' < n2 = b V.! i' : loop (i+1) + | otherwise = [] + where + i' = i - s + f (xs, wx) (ys, wy) = (U.zipWith (\x y -> + (fromIntegral wx * x + fromIntegral wy * y) / + fromIntegral (wx + wy)) xs ys, wx + wy) + +-- | dilute positions in a PWM that are associated with low weights +dilute :: (PWM, [Int]) -> PWM +dilute (pwm, ws) = PWM Nothing $ MU.fromRows $ zipWith f ws $ MU.toRows $ _mat pwm + where + f w r | w < n = let d = fromIntegral $ n - w + in U.map (\x -> (fromIntegral w * x + 0.25 * d) / fromIntegral n) r + | otherwise = r + n = maximum ws +{-# INLINE dilute #-} + +trim :: Bkgd -> Double -> PWM -> PWM +trim (BG (a,c,g,t)) cutoff pwm = PWM Nothing $ MU.fromRows $ dropWhileEnd f $ + dropWhile f rs + where + f x = kld x bg < cutoff + rs = MU.toRows $ _mat pwm + bg = U.fromList [a,c,g,t] +{-# INLINE trim #-} + +mergeTree :: AlignFn -> Dendrogram Motif -> PWM +mergeTree align t = case t of + Branch _ _ left right -> f (mergeTree align left) $ mergeTree align right + Leaf a -> _pwm a + where + f a b | isSame = mergePWM (a, b, i) + | otherwise = mergePWM (a, rcPWM b, i) + where (_, (isSame, i)) = align a b + +mergeTreeWeighted :: AlignFn -> Dendrogram Motif -> (PWM, [Int]) +mergeTreeWeighted align t = case t of + Branch _ _ left right -> f (mergeTreeWeighted align left) $ + mergeTreeWeighted align right + Leaf a -> (_pwm a, replicate (size $ _pwm a) 1) + where + f (a,w1) (b,w2) + | isSame = mergePWMWeighted (a,w1) (b,w2) i + | otherwise = mergePWMWeighted (a,w1) (rcPWM b, reverse w2) i + where (_, (isSame, i)) = align a b +{-# INLINE mergeTreeWeighted #-} + +iterativeMerge :: AlignFn + -> Double -- cutoff + -> [Motif] -- ^ Motifs to be merged. Motifs must have unique name. + -> [([B.ByteString], PWM, [Int])] +iterativeMerge align th motifs = runST $ do + motifs' <- V.unsafeThaw $ V.fromList $ flip map motifs $ \x -> + Just ([_name x], _pwm x, replicate (size $ _pwm x) 1) + + let n = VM.length motifs' + iter mat = do + -- retrieve the minimum value + ((i, j), (d, (isSame, pos))) <- loop ((-1,-1), (1/0, undefined)) 0 1 + if d < th + then do + Just (nm1, pwm1, w1) <- VM.unsafeRead motifs' i + Just (nm2, pwm2, w2) <- VM.unsafeRead motifs' j + let merged = (nm1 ++ nm2, pwm', w') + (pwm',w') | isSame = mergePWMWeighted (pwm1, w1) (pwm2, w2) pos + | otherwise = mergePWMWeighted (pwm1, w1) + (rcPWM $ pwm2, reverse w2) pos + + -- update + forM_ [0..n-1] $ \i' -> MSU.unsafeWrite mat (i',j) Nothing + VM.unsafeWrite motifs' i $ Just merged + VM.unsafeWrite motifs' j Nothing + forM_ [0..n-1] $ \j' -> when (i /= j') $ do + x <- VM.unsafeRead motifs' j' + case x of + Just (_, pwm2',_) -> do + let ali | i < j' = Just $ align pwm' pwm2' + | otherwise = Just $ align pwm2' pwm' + MSU.unsafeWrite mat (i,j') ali + _ -> return () + iter mat + else return () + where + loop ((i_min, j_min), d_min) i j + | i >= n = return ((i_min, j_min), d_min) + | j >= n = loop ((i_min, j_min), d_min) (i+1) (i+2) + | otherwise = do + x <- MSU.unsafeRead mat (i,j) + case x of + Just d -> if fst d < fst d_min + then loop ((i,j), d) i (j+1) + else loop ((i_min, j_min), d_min) i (j+1) + _ -> loop ((i_min, j_min), d_min) i (j+1) + + -- initialization + mat <- MSU.replicate (n,n) Nothing :: ST s (MSU.SymMMatrix VM.MVector s (Maybe (Double, (Bool, Int)))) + forM_ [0..n-1] $ \i -> forM_ [i+1 .. n-1] $ \j -> do + Just (_, pwm1, _) <- VM.unsafeRead motifs' i + Just (_, pwm2, _) <- VM.unsafeRead motifs' j + MSU.unsafeWrite mat (i,j) $ Just $ align pwm1 pwm2 + + iter mat + results <- V.unsafeFreeze motifs' + return $ V.toList $ V.map fromJust $ V.filter isJust results +{-# INLINE iterativeMerge #-} + +-- | build a guide tree from a set of motifs +buildTree :: AlignFn -> [Motif] -> Dendrogram Motif +buildTree align motifs = hclust Average (V.fromList motifs) δ + where + δ (Motif _ x) (Motif _ y) = fst $ align x y + +cutTreeBy :: Double -- ^ start + -> Double -- ^ step + -> ([Dendrogram a] -> Bool) -> Dendrogram a -> [Dendrogram a] +cutTreeBy start step fn tree = go start + where + go x | fn clusters = clusters + | x - step > 0 = go $ x - step + | otherwise = clusters + where clusters = cutAt tree x diff --git a/src/Bio/Motif/Search.hs b/src/Bio/Motif/Search.hs --- a/src/Bio/Motif/Search.hs +++ b/src/Bio/Motif/Search.hs @@ -1,50 +1,74 @@ -{-# LANGUAGE BangPatterns #-} +{-# LANGUAGE BangPatterns #-} +{-# LANGUAGE FlexibleContexts #-} module Bio.Motif.Search ( findTFBS , findTFBS' , findTFBSSlow , maxMatchSc - , MotifCompo(..) - , spacingConstraint + , SpaceDistribution(..) + , spaceConstraint + , spaceConstraintHelper ) where -import Bio.Seq (DNA, toBS) -import qualified Bio.Seq as Seq (length) -import Bio.Motif -import Control.Parallel.Strategies (parMap, rdeepseq) -import Data.Conduit -import qualified Data.HashSet as S -import Data.List (foldl', intercalate) -import Data.Ord (comparing) -import qualified Data.ByteString.Char8 as B -import qualified Data.Vector.Unboxed as U -import qualified Data.Matrix.Unboxed as M +import Conduit (Source, await, mapC, sinkVector, + yield, ($$), (=$=)) +import Control.Arrow ((***)) +import Control.Monad.ST (runST) +import Control.Parallel.Strategies (parMap, rdeepseq) +import qualified Data.ByteString.Char8 as B +import Data.Function (on) +import qualified Data.HashMap.Strict as HM +import qualified Data.HashSet as S +import Data.List (nubBy) +import qualified Data.Matrix.Unboxed as M +import Data.Ord (comparing) +import qualified Data.Vector.Unboxed as U +import Bio.Motif (Bkgd (..), Motif (..), PWM (..), + pValueToScore, rcPWM, scores', + size) +import Bio.Seq (DNA, toBS) +import qualified Bio.Seq as Seq (length) + -- | given a user defined threshold, look for TF binding sites on a DNA -- sequence, using look ahead search. This function doesn't search for binding -- sites on the reverse strand -findTFBS :: Monad m => Bkgd -> PWM -> DNA a -> Double -> Source m Int -findTFBS bg pwm dna thres = loop 0 +findTFBS :: Monad m + => Bkgd + -> PWM + -> DNA a + -> Double + -> Bool -- ^ whether to skip ambiguous sequences. Recommend: True + -- in most cases + -> Source m Int +findTFBS bg pwm dna thres skip = loop 0 where loop !i | i >= l - n + 1 = return () - | otherwise = do let (d, _) = lookAheadSearch bg pwm sigma dna i thres + | otherwise = do let (d, _) = searchFn bg pwm sigma dna i thres if d == n - 1 then yield i >> loop (i+1) else loop (i+1) sigma = optimalScoresSuffix bg pwm l = Seq.length dna n = size pwm + searchFn | skip = lookAheadSearch' + | otherwise = lookAheadSearch {-# INLINE findTFBS #-} -- | a parallel version of findTFBS -findTFBS' :: Bkgd -> PWM -> DNA a -> Double -> [Int] -findTFBS' bg pwm dna th = concat $ parMap rdeepseq f [0,step..l-n+1] +findTFBS' :: Bkgd + -> PWM + -> DNA a + -> Double + -> Bool + -> [Int] +findTFBS' bg pwm dna th skip = concat $ parMap rdeepseq f [0,step..l-n+1] where f x = loop x where loop i | i >= x+step || i >= l-n+1 = [] - | otherwise = let d = fst $ lookAheadSearch bg pwm sigma dna i th + | otherwise = let d = fst $ searchFn bg pwm sigma dna i th in if d == n-1 then i : loop (i+1) else loop (i+1) @@ -52,11 +76,13 @@ l = Seq.length dna n = size pwm step = 500000 + searchFn | skip = lookAheadSearch' + | otherwise = lookAheadSearch {-# INLINE findTFBS' #-} -- | use naive search findTFBSSlow :: Monad m => Bkgd -> PWM -> DNA a -> Double -> Source m Int -findTFBSSlow bg pwm dna thres = scores' bg pwm dna $= +findTFBSSlow bg pwm dna thres = scores' bg pwm dna =$= loop 0 where loop i = do v <- await @@ -137,59 +163,112 @@ n = size pwm {-# INLINE lookAheadSearch #-} +-- | this version skip sequences contain ambiguous bases, like "N" +lookAheadSearch' :: Bkgd -- ^ background nucleotide distribution + -> PWM -- ^ pwm + -> U.Vector Double -- ^ best possible match score of suffixes + -> DNA a -- ^ DNA sequence + -> Int -- ^ starting location on the DNA + -> Double -- ^ threshold + -> (Int, Double) -- ^ (d, sc_d), the largest d such that sc_d > th_d +lookAheadSearch' (BG (a, c, g, t)) pwm sigma dna start thres = loop (0, -1) 0 + where + loop (!acc, !th_d) !d + | acc < th_d = (d-2, acc) + | otherwise = if d >= n + then (d-1, acc) + else loop (acc + sc, thres - sigma U.! d) (d+1) + where + sc = case toBS dna `B.index` (start + d) of + 'A' -> log $! matchA / a + 'C' -> log $! matchC / c + 'G' -> log $! matchG / g + 'T' -> log $! matchT / t + _ -> -1 / 0 + matchA = addSome $ M.unsafeIndex (_mat pwm) (d,0) + matchC = addSome $ M.unsafeIndex (_mat pwm) (d,1) + matchG = addSome $ M.unsafeIndex (_mat pwm) (d,2) + matchT = addSome $ M.unsafeIndex (_mat pwm) (d,3) + addSome !x | x == 0 = pseudoCount + | otherwise = x + pseudoCount = 0.0001 + n = size pwm +{-# INLINE lookAheadSearch' #-} + +{- data MotifCompo = MotifCompo - { _motif1 :: Motif - , _motif2 :: Motif + { _motif1 :: Motif + , _motif2 :: Motif , _sameDirection :: Bool - , _spacing :: Int - , _score :: Double + , _spacing :: Int + , _score :: Double } instance Show MotifCompo where show (MotifCompo m1 m2 isSame sp sc) = intercalate "\t" [B.unpack $ _name m1, B.unpack $ _name m2, show isSame, show sp, show sc] + -} +data SpaceDistribution = SpaceDistribution + { _motif1 :: Motif + , _nSites1 :: (Int, Int) + , _motif2 :: Motif + , _nSites2 :: (Int, Int) + , _same :: [(Int, Int)] + , _opposite :: [(Int, Int)] + } deriving (Show, Read) + -- | search for spacing constraint between two TFs -spacingConstraint :: Motif -- ^ motif 1 - -> Motif -- ^ motif 2 - -> Bkgd -- ^ backgroud nucleotide distribution - -> Double -- ^ p-Value for motif finding - -> Int -- ^ half window size - -> Int -- ^ max distance to search - -> DNA a -> [MotifCompo] -spacingConstraint m1@(Motif _ pwm1) m2@(Motif _ pwm2) bg th w k dna = same ++ oppose +spaceConstraint :: [(Motif, Motif)] -- ^ motifs, names must be unique + -> Bkgd -- ^ backgroud nucleotide distribution + -> Double -- ^ p-Value for motif finding + -> Int -- ^ half window size, typical 5 + -> Int -- ^ max distance to search, typical 300 + -> DNA a -> [SpaceDistribution] +spaceConstraint pairs bg th w k dna = flip map pairs $ \(a, b) -> + let (m1, site1) = HM.lookupDefault undefined (_name a) sites + (m2, site2) = HM.lookupDefault undefined (_name b) sites + (same, opposite) = spaceConstraintHelper site1 site2 w k + in SpaceDistribution m1 ((U.length *** U.length) site1) m2 + ((U.length *** U.length) site2) same opposite where - rs = let rs' = [-k, -k+2*w+1 .. 0] - in rs' ++ map (*(-1)) (reverse rs') - -- on the same orientation - same = zipWith f rs $ zipWith (+) nFF nRR - where - nFF = map (nOverlap forward1 forward2 w) rs - nRR = map (nOverlap reverse1 reverse2 w) $ reverse rs - f r c = MotifCompo m1 m2 True r $ fromIntegral c / n - oppose = zipWith f rs $ zipWith (+) nFR nRF + motifs = nubBy ((==) `on` _name) $ concatMap (\(a,b) -> [a,b]) pairs + findSites (Motif _ pwm) = (fwd, rev) where - nFR = map (nOverlap forward1 reverse2 w) rs - nRF = map (nOverlap reverse1 forward2 w) $ reverse rs - f r c = MotifCompo m1 m2 False r $ fromIntegral c / n - forward1 = findTFBS' bg pwm1 dna th1 - forward2 = S.fromList $ findTFBS' bg pwm2 dna th2 - reverse1 = map (+ (s1 - 1)) $ findTFBS' bg (rcPWM pwm1) dna th1' - reverse2 = S.fromList $ map (+ (s2 - 1)) $ findTFBS' bg (rcPWM pwm2) dna th2' - th1 = pValueToScore th bg pwm1 - th1' = pValueToScore th bg $ rcPWM pwm1 - th2 = pValueToScore th bg pwm2 - th2' = pValueToScore th bg $ rcPWM pwm2 - s1 = size pwm1 - s2 = size pwm2 - n = sqrt $ fromIntegral $ (length forward1 + length reverse1) * (S.size forward2 + S.size reverse2) + fwd = runST $ findTFBS bg pwm dna cutoff True $$ sinkVector + rev = runST $ findTFBS bg pwm' dna cutoff' True =$= + mapC (+ (size pwm - 1)) $$ sinkVector + cutoff = pValueToScore th bg pwm + cutoff' = pValueToScore th bg pwm' + pwm' = rcPWM pwm + sites = HM.fromList $ map (\m -> (_name m, (m, findSites m))) motifs +{-# INLINE spaceConstraint #-} - nOverlap :: [Int] -> S.HashSet Int -> Int -> Int -> Int - nOverlap xs ys w' i = foldl' f 0 xs +spaceConstraintHelper :: (U.Vector Int, U.Vector Int) + -> (U.Vector Int, U.Vector Int) + -> Int + -> Int + -> ([(Int, Int)], [(Int, Int)]) +spaceConstraintHelper (fw1, rv1) (fw2, rv2) w k = (same, oppose) + where + rs = let rs' = [-k, -k+2*w+1 .. 0] + in rs' ++ map (*(-1)) (reverse rs') + fw2' = S.fromList $ U.toList fw2 + rv2' = S.fromList $ U.toList rv2 + nOverlap :: U.Vector Int -> S.HashSet Int -> Int -> Int -> Int + nOverlap xs ys w' i = U.foldl' f 0 xs where f acc x | any (`S.member` ys) [x + i - w' .. x + i + w'] = acc + 1 | otherwise = acc -{-# INLINE spacingConstraint #-} + same = zip rs $ zipWith (+) nFF nRR + where + nFF = map (nOverlap fw1 fw2' w) rs + nRR = map (nOverlap rv1 rv2' w) $ reverse rs + oppose = zip rs $ zipWith (+) nFR nRF + where + nFR = map (nOverlap fw1 rv2' w) rs + nRF = map (nOverlap rv1 fw2' w) $ reverse rs +{-# INLINE spaceConstraintHelper #-} {- computePValue :: Double -> [Int] -> [(Int, Double)] diff --git a/src/Bio/RealWorld/BioGRID.hs b/src/Bio/RealWorld/BioGRID.hs --- a/src/Bio/RealWorld/BioGRID.hs +++ b/src/Bio/RealWorld/BioGRID.hs @@ -82,7 +82,8 @@ let request = initReq { method = "GET" , requestHeaders = [("Content-type", "text/plain")] } - r <- withManager $ \manager -> httpLbs request manager + manager <- newManager tlsManagerSettings + r <- httpLbs request manager return $ map parseAsTab2 $ BL.lines $ responseBody r where url = base ++ "/interactions/?searchNames=ture&includeInteractors=false" diff --git a/src/Bio/RealWorld/ENCODE.hs b/src/Bio/RealWorld/ENCODE.hs --- a/src/Bio/RealWorld/ENCODE.hs +++ b/src/Bio/RealWorld/ENCODE.hs @@ -39,7 +39,6 @@ , showResult ) where -import Control.Applicative ((<$>)) import Data.Aeson import Data.Aeson.Types import Data.Aeson.Encode.Pretty (encodePretty) @@ -47,12 +46,10 @@ import qualified Data.ByteString.Lazy.Char8 as B import qualified Data.ByteString.Char8 as BS import qualified Data.Sequence as S -import qualified Data.Foldable as F import qualified Data.Text as T import qualified Data.Vector as V import Network.HTTP.Conduit import Data.Default.Class -import Data.Monoid import Bio.RealWorld.ID @@ -66,9 +63,9 @@ show (KeyWords x y) = f x ++ g y where f x' | S.null x' = "" - | otherwise = "searchTerm=" ++ F.foldr1 (\a b -> b ++ ('+':a)) x' ++ "&" + | otherwise = "searchTerm=" ++ foldr1 (\a b -> b ++ ('+':a)) x' ++ "&" g y' | S.null y' = "" - | otherwise = F.foldr1 (\a b -> b ++ ('&':a)) y' + | otherwise = foldr1 (\a b -> b ++ ('&':a)) y' instance Monoid KeyWords where mempty = KeyWords S.empty S.empty @@ -80,14 +77,15 @@ -- | general search using keywords and a set of constraints. Example: -- search ["chip", "sp1"] ["type=experiment"] search :: KeyWords -> IO (Either String [Value]) -search kw = do +search kw = do initReq <- parseUrl url - let request = initReq { method = "GET" + let request = initReq { method = "GET" , requestHeaders = [("accept", "application/json")] } - r <- withManager $ \manager -> httpLbs request manager + manager <- newManager tlsManagerSettings + r <- httpLbs request manager return $ (eitherDecode . responseBody) r >>= - parseEither (withObject "ENCODE_JSON" (.: "@graph")) + parseEither (withObject "ENCODE_JSON" (.: "@graph")) where url = base ++ "search/?" ++ show kw @@ -119,10 +117,11 @@ openUrl :: String -> String -> IO B.ByteString openUrl url datatype = do initReq <- parseUrl url - let request = initReq { method = "GET" + let request = initReq { method = "GET" , requestHeaders = [("accept", BS.pack datatype)] } - r <- withManager $ \manager -> httpLbs request manager + manager <- newManager tlsManagerSettings + r <- httpLbs request manager return $ responseBody r jsonFromUrl :: String -> IO (Either String Value) @@ -148,6 +147,6 @@ as :: FromJSON a => Value -> a as = getResult . fromJSON where - getResult (Error e) = error e + getResult (Error e) = error e getResult (Success x) = x {-# INLINE as #-} diff --git a/src/Bio/RealWorld/Ensembl.hs b/src/Bio/RealWorld/Ensembl.hs --- a/src/Bio/RealWorld/Ensembl.hs +++ b/src/Bio/RealWorld/Ensembl.hs @@ -28,11 +28,12 @@ lookupHelp :: [EnsemblID] -> IO (Either String Object) lookupHelp xs = do initReq <- parseUrl url - let request = initReq { method = "POST" + let request = initReq { method = "POST" , requestHeaders = [("Content-type", "application/json")] , requestBody = body } - r <- withManager $ \manager -> httpLbs request manager + manager <- newManager tlsManagerSettings + r <- httpLbs request manager return . eitherDecode . responseBody $ r where url = base ++ "/lookup/id/" diff --git a/src/Bio/RealWorld/UCSC.hs b/src/Bio/RealWorld/UCSC.hs --- a/src/Bio/RealWorld/UCSC.hs +++ b/src/Bio/RealWorld/UCSC.hs @@ -21,10 +21,8 @@ , readUCSCGenes' ) where -import Control.Monad.IO.Class (liftIO) import qualified Data.ByteString.Char8 as B -import Data.Conduit -import qualified Data.Conduit.List as CL +import Conduit import qualified Data.Vector.Unboxed as U import System.IO @@ -69,7 +67,7 @@ {-# INLINE readUCSCGenes #-} readUCSCGenes' :: FilePath -> IO [UCSCGene] -readUCSCGenes' fl = readUCSCGenes fl $$ CL.consume +readUCSCGenes' fl = readUCSCGenes fl $$ sinkList {-# INLINE readUCSCGenes' #-} readGeneFromLine :: B.ByteString -> UCSCGene diff --git a/src/Bio/Seq.hs b/src/Bio/Seq.hs --- a/src/Bio/Seq.hs +++ b/src/Bio/Seq.hs @@ -1,8 +1,8 @@ {-# LANGUAGE MultiParamTypeClasses #-} {-# LANGUAGE BangPatterns #-} {-# LANGUAGE FlexibleContexts #-} -module Bio.Seq - ( +module Bio.Seq + ( -- * Alphabet Basic , IUPAC @@ -24,7 +24,6 @@ import qualified Data.HashMap.Strict as M import qualified Data.HashSet as S import Data.Char8 (toUpper) -import Data.Monoid (Monoid(..)) -- | Alphabet defined by http://www.chem.qmul.ac.uk/iupac/ -- | Standard unambiguous alphabet @@ -77,7 +76,7 @@ class BioSeq' s => BioSeq s a where alphabet :: s a -> S.HashSet Char - fromBS :: B.ByteString -> s a + fromBS :: B.ByteString -> s a instance BioSeq DNA Basic where alphabet _ = S.fromList "ACGT" diff --git a/src/Bio/Seq/IO.hs b/src/Bio/Seq/IO.hs --- a/src/Bio/Seq/IO.hs +++ b/src/Bio/Seq/IO.hs @@ -16,7 +16,6 @@ import Bio.Seq import Bio.Utils.Misc (readInt) -import Control.Applicative ((<$>)) import qualified Data.ByteString.Char8 as B import qualified Data.HashMap.Lazy as M import Data.List.Split diff --git a/src/Bio/Utils/Functions.hs b/src/Bio/Utils/Functions.hs --- a/src/Bio/Utils/Functions.hs +++ b/src/Bio/Utils/Functions.hs @@ -18,6 +18,7 @@ , ihs' , scale , filterFDR + , slideAverage , hyperquick , kld , jsd @@ -32,7 +33,7 @@ import qualified Data.Vector as V import qualified Data.Vector.Generic as G import qualified Data.Vector.Unboxed as U -import Statistics.Sample (meanVarianceUnb) +import Statistics.Sample (meanVarianceUnb, mean) import Statistics.Function (sortBy) -- | inverse hyperbolic sine transformation @@ -55,7 +56,10 @@ {-# INLINE scale #-} -- | given the p-values, filter data by controling FDR -filterFDR :: G.Vector v (a, Double) => Double -> v (a, Double) -> v (a, Double) +filterFDR :: G.Vector v (a, Double) + => Double -- ^ desired FDR value + -> v (a, Double) -- ^ input data and pvalues + -> v (a, Double) filterFDR α xs = go n . sortBy (comparing snd) $ xs where go rank v | rank <= 0 = G.empty @@ -64,6 +68,19 @@ n = G.length xs {-# INLINE filterFDR #-} +-- | Compute the sliding average for each entry in a vector +slideAverage :: (Fractional a, G.Vector v a) + => Int -- ^ size of HALF sliding window, 2 means a total + -- window size is 5 + -> v a + -> v a +slideAverage k xs = G.generate n $ \i -> go xs (max 0 (i-k)) (min (n-1) (i+k)) + where + go v i j = let l = j - i + 1 + in G.foldl' (+) 0 (G.unsafeSlice i l v) / fromIntegral l + n = G.length xs +{-# INLINE slideAverage #-} + hyperquick :: Int -> Int -> Int -> Int -> Double hyperquick x m _n _N = loop (m-2) s s (2*e) where @@ -82,28 +99,9 @@ ( 1 - fromIntegral (_n-1-x) / fromIntegral (_N-1-m) ) e = 1e-20 -{- -hyperquick' :: Int -> Int -> Int -> Int -> Double -hyperquick' x m _n _N = loop (m-2) s s (2*e) - where - loop !k !ak !bk !epsk - | k < _N - (_n-x) - 1 && epsk > e = - let ck = ak / bk - k' = k + 1 - jjm = invJm _n x _N k' - bk' = bk * jjm + 1 - ak' = ak * jjm - espk' = fromIntegral (_N - (_n - x) - 1 - k') * (ck - ak' / bk') - in loop k' ak' bk' espk' - | otherwise = 1 - (ak / bk - epsk / 2) - s = foldl' (\s' k -> 1 + s' * invJm _n x _N k) 1.0 [x..m-2] - invJm _n x _N m = ( 1 - fromIntegral x / fromIntegral (m+1) ) / - ( 1 - fromIntegral (_n-1-x) / fromIntegral (_N-1-m) ) - e = 1e-200 - -} -- | compute the Kullback-Leibler divergence between two valid (not check) probability distributions. --- kl(X,Y) = \sum_i P(x_i) log_2(P(x_i)\/P(y_i)). +-- kl(X,Y) = \sum_i P(x_i) log_2(P(x_i)\/P(y_i)). kld :: (G.Vector v Double, G.Vector v (Double, Double)) => v Double -> v Double -> Double kld xs ys | G.length xs /= G.length ys = error "Incompitable dimensions" | otherwise = G.foldl' f 0 . G.zip xs $ ys diff --git a/src/Bio/Utils/Overlap.hs b/src/Bio/Utils/Overlap.hs --- a/src/Bio/Utils/Overlap.hs +++ b/src/Bio/Utils/Overlap.hs @@ -13,9 +13,7 @@ import Data.Function import Bio.Data.Bed import Control.Monad -import Data.Conduit -import qualified Data.Conduit.List as CL -import Control.Monad.Trans.Class (lift) +import Conduit -- | convert lines of a BED file into a data structure - A hashmap of which the -- | chromosomes, and values are interval maps. @@ -45,7 +43,7 @@ intervals = case set of Just iMap -> IM.intersecting iMap.toInterval $ b _ -> [] - forM_ intervals (\interval -> do + forM_ intervals (\interval -> do let i = snd interval nucl = overlap b . fst $ interval VM.write v i . (+nucl) =<< VM.read v i @@ -56,7 +54,7 @@ featMap = toMap.map (\x -> (x^.chrom, (x^.chromStart, x^.chromEnd))) $ bin featWidth = V.fromList.map (\x -> x^.chromEnd - x^.chromStart) $ bin n = length bin - overlap (l, u) (IM.ClosedInterval l' u') + overlap (l, u) (IM.ClosedInterval l' u') | l' >= l = if u' <= u then u'-l'+1 else u-l'+1 | otherwise = if u' <= u then u'-l+1 else u-l+1 overlap _ _ = 0 @@ -71,16 +69,16 @@ sink :: Sink BED IO (V.Vector Int) sink = do v <- lift $ VM.replicate (n+1) 0 - CL.mapM_ $ \t -> do + mapM_C $ \t -> do let set = M.lookup (_chrom t) featMap s = _chromStart t e = _chromEnd t b = (s, e) l = e - s + 1 intervals = case set of - Just iMap -> IM.intersecting iMap.toInterval $ b + Just iMap -> IM.toList . IM.intersecting iMap . toInterval $ b _ -> [] - forM_ intervals (\interval -> do + forM_ intervals (\interval -> do let i = snd interval nucl = overlap b . fst $ interval VM.write v i . (+nucl) =<< VM.read v i @@ -91,13 +89,13 @@ featMap = toMap.map (\x -> (_chrom x, (_chromStart x, _chromEnd x))) $ bin featWidth = V.fromList.map (\x -> _chromEnd x - _chromStart x) $ bin n = length bin - overlap (l, u) (IM.ClosedInterval l' u') + overlap (l, u) (IM.ClosedInterval l' u') | l' >= l = if u' <= u then u'-l'+1 else u-l'+1 | otherwise = if u' <= u then u'-l+1 else u-l+1 overlap _ _ = 0 normalize a b = fromIntegral a / fromIntegral b -overlapFragment, overlapNucl :: +overlapFragment, overlapNucl :: [(Int, Int)] -- ^ Ascending order list -> [(Int, Int)] -- ^ tags in any order -> V.Vector Int @@ -107,7 +105,7 @@ iMap = IM.fromAscList $ zip (map toInterval xs) [0..] go ts' v = do forM_ ts' (\x -> do - let indices = snd.unzip.IM.intersecting iMap.toInterval $ x + let indices = IM.elems . IM.intersecting iMap . toInterval $ x forM_ indices (\i -> VM.write v i . (+1) =<< VM.read v i) ) return v @@ -118,15 +116,15 @@ iMap = IM.fromAscList $ zip (map toInterval xs) [0..] go ts' v = do forM_ ts' (\x -> do - let intervals = IM.intersecting iMap.toInterval $ x - forM_ intervals (\interval -> do + let intervals = IM.toList . IM.intersecting iMap . toInterval $ x + forM_ intervals (\interval -> do let i = snd interval nucl = overlap x . fst $ interval VM.write v i . (+nucl) =<< VM.read v i ) ) return v - overlap (l, u) (IM.ClosedInterval l' u') + overlap (l, u) (IM.ClosedInterval l' u') | l' >= l = if u' <= u then u'-l'+1 else u-l'+1 | otherwise = if u' <= u then u'-l+1 else u-l+1 overlap _ _ = 0 diff --git a/tests/Tests/Bam.hs b/tests/Tests/Bam.hs new file mode 100644 --- /dev/null +++ b/tests/Tests/Bam.hs @@ -0,0 +1,21 @@ +{-# LANGUAGE OverloadedStrings #-} + +module Tests.Bam (tests) where + +import Bio.Data.Bed +import Bio.Data.Bam +import Conduit +import Test.Tasty +import Test.Tasty.HUnit +import qualified Data.Vector as V + +tests :: TestTree +tests = testGroup "Test: Bio.Data.Bam" + [ testCase "bamToBed" bamToBedTest + ] + +bamToBedTest :: Assertion +bamToBedTest = do + bed <- readBed' "tests/data/example.bed" + bed' <- readBam "tests/data/example.bam" =$= bamToBed $$ sinkList + bed @=? bed' diff --git a/tests/test.hs b/tests/test.hs --- a/tests/test.hs +++ b/tests/test.hs @@ -1,4 +1,5 @@ import qualified Tests.Bed as Bed +import qualified Tests.Bam as Bam import qualified Tests.Motif as Motif import qualified Tests.ChIPSeq as ChIPSeq import qualified Tests.Seq as Seq @@ -7,6 +8,7 @@ main :: IO () main = defaultMain $ testGroup "Main" [ Bed.tests + , Bam.tests , Seq.tests , ChIPSeq.tests , Motif.tests