diff --git a/C/config.h b/C/config.h new file mode 100644 --- /dev/null +++ b/C/config.h @@ -0,0 +1,240 @@ +/* config.h. Generated from config.h.in by configure. */ +/* config.h.in. Generated from configure.ac by autoheader. */ + +/* Define to 1 if you have the `asprintf' function. */ +#define HAVE_ASPRINTF 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_DLFCN_H 1 + +/* Define to 1 if you have the `erand48' function. */ +#define HAVE_ERAND48 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_FLOAT_H 1 + +/* Define to 1 if you have the `floor' function. */ +#define HAVE_FLOOR 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_INTTYPES_H 1 + +/* Define to 1 if you have the `gsl' library (-lgsl). */ +#define HAVE_LIBGSL 1 + +/* Define to 1 if you have the `gslcblas' library (-lgslcblas). */ +#define HAVE_LIBGSLCBLAS 1 + +/* Define to 1 if you have the `m' library (-lm). */ +#define HAVE_LIBM 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_LIMITS_H 1 + +/* Define to 1 if your system has a GNU libc compatible `malloc' function, and + to 0 otherwise. */ +#define HAVE_MALLOC 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_MALLOC_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_MATH_H 1 + +/* Define to 1 if you have the `memmove' function. */ +#define HAVE_MEMMOVE 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_MEMORY_H 1 + +/* Define to 1 if you have the `memset' function. */ +#define HAVE_MEMSET 1 + +/* Define if OpenMP is enabled */ +#define HAVE_OPENMP 1 + +/* Define to 1 if you have the `pow' function. */ +#define HAVE_POW 1 + +/* Define to 1 if your system has a GNU libc compatible `realloc' function, + and to 0 otherwise. */ +#define HAVE_REALLOC 1 + +/* Define to 1 if you have the `rint' function. */ +#define HAVE_RINT 1 + +/* Define to 1 if you have the `sqrt' function. */ +#define HAVE_SQRT 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_STDARG_H 1 + +/* Define to 1 if stdbool.h conforms to C99. */ +#define HAVE_STDBOOL_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_STDINT_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_STDLIB_H 1 + +/* Define to 1 if you have the `strchr' function. */ +#define HAVE_STRCHR 1 + +/* Define to 1 if you have the `strdup' function. */ +#define HAVE_STRDUP 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_STRINGS_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_STRING_H 1 + +/* Define to 1 if you have the `strrchr' function. */ +#define HAVE_STRRCHR 1 + +/* Define to 1 if you have the `strstr' function. */ +#define HAVE_STRSTR 1 + +/* Define to 1 if you have the `strtol' function. */ +#define HAVE_STRTOL 1 + +/* Define to 1 if you have the `strtoul' function. */ +#define HAVE_STRTOUL 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_SYS_STAT_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_SYS_TYPES_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_UNISTD_H 1 + +/* Define to 1 if you have the `vasprintf' function. */ +#define HAVE_VASPRINTF 1 + +/* Define to 1 if the system has the type `_Bool'. */ +#define HAVE__BOOL 1 + +/* Define to the sub-directory where libtool stores uninstalled libraries. */ +#define LT_OBJDIR ".libs/" + +/* Name of package */ +#define PACKAGE "ViennaRNA" + +/* Define to the address where bug reports for this package should be sent. */ +#define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" + +/* Define to the full name of this package. */ +#define PACKAGE_NAME "ViennaRNA" + +/* Define to the full name and version of this package. */ +#define PACKAGE_STRING "ViennaRNA 2.3.3" + +/* Define to the one symbol short name of this package. */ +#define PACKAGE_TARNAME "ViennaRNA" + +/* Define to the home page for this package. */ +#define PACKAGE_URL "http://www.tbi.univie.ac.at/RNA" + +/* Define to the version of this package. */ +#define PACKAGE_VERSION "2.3.3" + +/* Define to 1 if you have the ANSI C header files. */ +#define STDC_HEADERS 1 + +/* only for gcc */ +#define UNUSED __attribute__ ((unused)) + +/* Use floating point precision in partition function computations */ +/* #undef USE_FLOAT_PF */ + +/* Compute z-scores for RNALfold */ +#define USE_SVM 1 + +/* Enable extensions on AIX 3, Interix. */ +#ifndef _ALL_SOURCE +# define _ALL_SOURCE 1 +#endif +/* Enable GNU extensions on systems that have them. */ +#ifndef _GNU_SOURCE +# define _GNU_SOURCE 1 +#endif +/* Enable threading extensions on Solaris. */ +#ifndef _POSIX_PTHREAD_SEMANTICS +# define _POSIX_PTHREAD_SEMANTICS 1 +#endif +/* Enable extensions on HP NonStop. */ +#ifndef _TANDEM_SOURCE +# define _TANDEM_SOURCE 1 +#endif +/* Enable general extensions on Solaris. */ +#ifndef __EXTENSIONS__ +# define __EXTENSIONS__ 1 +#endif + + +/* Version number of package */ +#define VERSION "2.3.3" + +/* Do not use colors for TTY output */ +/* #undef WITHOUT_TTY_COLORS */ + +/* Use Boustrophedon scheme for stochastic backtracking */ +#define WITH_BOUSTROPHEDON 1 + +/* Include C-library Unit tests */ +/* #undef WITH_CHECK */ + +/* Analyse{Dists,Seqs} */ +/* #undef WITH_CLUSTER */ + +/* Warn upon usage of deprecated symbols */ +/* #undef WITH_DEPRECATION_WARNING */ + +/* Define if using the dmalloc debugging malloc package */ +/* #undef WITH_DMALLOC */ + +/* Use GNU Scientific Library */ +#define WITH_GSL 1 + +/* Add JSON support for input and output functions */ +#define WITH_JSON_SUPPORT 1 + +/* Create the perl interface to RNAlib */ +#define WITH_PERL_INTERFACE 1 + +/* Create the python2 interface to RNAlib */ +#define WITH_PYTHON2_INTERFACE 1 + +/* Create the Python3 interface to RNAlib */ +#define WITH_PYTHON3_INTERFACE 1 + +/* Define to 1 if on MINIX. */ +/* #undef _MINIX */ + +/* Define to 2 if the system does not provide POSIX.1 features except with + this defined. */ +/* #undef _POSIX_1_SOURCE */ + +/* Define to 1 if you need to in order for `stat' and other things to work. */ +/* #undef _POSIX_SOURCE */ + +/* Define to empty if `const' does not conform to ANSI C. */ +/* #undef const */ + +/* Define to `__inline__' or `__inline' if that's what the C compiler + calls it, or to nothing if 'inline' is not supported under any name. */ +#ifndef __cplusplus +/* #undef inline */ +#endif + +/* Define to rpl_malloc if the replacement function should be used. */ +/* #undef malloc */ + +/* Define to rpl_realloc if the replacement function should be used. */ +/* #undef realloc */ + +/* Define to `unsigned int' if does not define. */ +/* #undef size_t */ diff --git a/ViennaRNA-bindings.cabal b/ViennaRNA-bindings.cabal --- a/ViennaRNA-bindings.cabal +++ b/ViennaRNA-bindings.cabal @@ -1,5 +1,5 @@ name: ViennaRNA-bindings -version: 0.233.1.1 +version: 0.233.1.2 maintainer: choener@tbi.univie.ac.at homepage: https://github.com/choener/ViennaRNA-bindings bug-reports: https://github.com/choener/ViennaRNA-bindings/issues @@ -37,6 +37,8 @@ C/ViennaRNA/*.h C/ViennaRNA/*.c C/ViennaRNA/*.inc + C/config.h + C/*.c changelog.md README.md @@ -128,6 +130,8 @@ tests default-language: Haskell2010 + build-tools: + c2hs default-extensions: CPP , TemplateHaskell build-depends: base diff --git a/changelog.md b/changelog.md --- a/changelog.md +++ b/changelog.md @@ -1,3 +1,7 @@ +0.233.1.2 + +- included C/$ALL.c C/config.h in distribution + 0.233.1.1 ---------