diff --git a/Analyse.hs b/Analyse.hs
new file mode 100644
--- /dev/null
+++ b/Analyse.hs
@@ -0,0 +1,50 @@
+{-
+Copyright (C) 2008 Ivan Lazar Miljenovic <Ivan.Miljenovic@gmail.com>
+
+This file is part of SourceGraph.
+
+SourceGraph is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+-}
+
+{- |
+   Module      : Analyse
+   Description : Analyse Haskell software
+   Copyright   : (c) Ivan Lazar Miljenovic 2008
+   License     : GPL-3 or later.
+   Maintainer  : Ivan.Miljenovic@gmail.com
+
+   Analyse Haskell software
+ -}
+module Analyse where
+
+import Analyse.Utils
+import Analyse.Module
+import Analyse.Imports
+import Analyse.Everything
+import Parsing.Types
+
+import Data.Graph.Analysis
+
+import System.Random
+
+-- | Analyse an entire Haskell project.  Takes in a random seed,
+--   the list of exported modules and the parsed Haskell code in
+--   'HaskellModules' form.
+analyse            :: (RandomGen g) => g -> [ModuleName] -> HaskellModules
+                   -> [DocElement]
+analyse g exps hms = [ analyseModules hms
+                     , analyseImports g exps hms
+                     , analyseEverything g exps hms
+                     ]
diff --git a/Analyse/Everything.hs b/Analyse/Everything.hs
new file mode 100644
--- /dev/null
+++ b/Analyse/Everything.hs
@@ -0,0 +1,213 @@
+{-
+Copyright (C) 2008 Ivan Lazar Miljenovic <Ivan.Miljenovic@gmail.com>
+
+This file is part of SourceGraph.
+
+SourceGraph is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+-}
+
+{- |
+   Module      : Analyse.Software
+   Description : Analyse Haskell software
+   Copyright   : (c) Ivan Lazar Miljenovic 2008
+   License     : GPL-3 or later.
+   Maintainer  : Ivan.Miljenovic@gmail.com
+
+   Analysis of the entire overall piece of software.
+ -}
+module Analyse.Everything where
+
+import Parsing.Types
+import Analyse.Utils
+
+import Data.Graph.Analysis
+
+import Data.Maybe
+import Text.Printf
+import System.Random
+
+type CodeData = GraphData Function
+
+
+-- | Performs analysis of the entire codebase.
+analyseEverything :: (RandomGen g) => g -> [ModuleName] -> HaskellModules
+                  -> DocElement
+analyseEverything g exps hm = Section title elems
+    where
+      cd = codeToGraph exps hm
+      title = Text "Analysis of the entire codebase"
+      elems = catMaybes
+              $ map ($cd) [ graphOf
+                          , clustersOf g
+                          , collapseAnal
+                          , coreAnal
+                          , cycleCompAnal
+                          , rootAnal
+                          , componentAnal
+                          , cliqueAnal
+                          , cycleAnal
+                          , chainAnal
+                          ]
+
+
+codeToGraph          :: [ModuleName] -> HaskellModules -> CodeData
+codeToGraph exps hms = importData params
+    where
+      exps' = concat . catMaybes $ map (fmap exports . getModule hms) exps
+      fl = combineCalls .map functions $ hModulesIn hms
+      params = Params { dataPoints    = functionsIn fl
+                      , relationships = functionEdges fl
+                      , roots         = exps'
+                      , directed      = True
+                      }
+
+graphOf    :: CodeData -> Maybe DocElement
+graphOf cd = Just $ Section title [gc]
+    where
+      title = Text "Visualisation of the entire software"
+      gc = GraphImage $ applyAlg dg cd
+      dg g = toGraph "code" label g
+      label = "Software visualisation"
+
+clustersOf      :: (RandomGen g) => g -> CodeData -> Maybe DocElement
+clustersOf g cd = Just $ Section title [text, gc, textAfter, cw, rng]
+    where
+      title = Text "Visualisation of overall function calls"
+      gc = GraphImage $ applyAlg dg cd
+      text = Paragraph
+             [Text "Here is the current module grouping of functions:"]
+      dg gr = toClusters "codeCluster" label gr
+      label = "Module groupings"
+      textAfter = Paragraph [Text "Here are two proposed module groupings:"]
+      cw = GraphImage
+           . toClusters "codeCW" "Chinese Whispers module suggestions"
+           $ applyAlg (chineseWhispers g) cd
+      rng = GraphImage
+            . toClusters "codeRNG" "Relative Neighbourhood module suggestions"
+            $ applyAlg relativeNeighbourhood cd
+
+componentAnal :: CodeData -> Maybe DocElement
+componentAnal cd
+    | single comp = Nothing
+    | otherwise   = Just elem
+    where
+      comp = applyAlg componentsOf cd
+      len = length comp
+      elem = Section title [Paragraph [Text text]]
+      title = Text "Function component analysis"
+      text = printf "The functions are split up into %d components.  \
+                     \You may wish to consider splitting the code up \
+                     \into multiple libraries." len
+
+cliqueAnal :: CodeData -> Maybe DocElement
+cliqueAnal cd
+    | null clqs = Nothing
+    | otherwise = Just elem
+    where
+      clqs = applyAlg cliquesIn cd
+      clqs' = map (Paragraph . return . Text . showNodes) clqs
+      text = Text "The code has the following cliques:"
+      elem = Section title $ (Paragraph [text]) : clqs'
+      title = Text "Overall clique analysis"
+
+cycleAnal :: CodeData -> Maybe DocElement
+cycleAnal cd
+    | null cycs = Nothing
+    | otherwise = Just elem
+    where
+      cycs = applyAlg uniqueCycles cd
+      cycs' = map (Paragraph . return . Text . showCycle) cycs
+      text = Text "The code has the following non-clique cycles:"
+      elem = Section title $ (Paragraph [text]) : cycs'
+      title = Text "Overall cycle analysis"
+
+chainAnal :: CodeData -> Maybe DocElement
+chainAnal cd
+    | null chns = Nothing
+    | otherwise = Just elem
+    where
+      chns = applyAlg chainsIn cd
+      chns' = map (Paragraph .return . Text . showPath) chns
+      text = Text "The functions have the following chains:"
+      textAfter = Text "These chains can all be compressed down to \
+                       \a single function."
+      elem = Section title $
+             [Paragraph [text]] ++ chns' ++ [Paragraph [textAfter]]
+      title = Text "Overall chain analysis"
+
+rootAnal :: CodeData -> Maybe DocElement
+rootAnal cd
+    | asExpected = Nothing
+    | otherwise  = Just elem
+    where
+      (wntd, ntRs, ntWd) = classifyRoots cd
+      asExpected = (null ntRs) && (null ntWd)
+      rpt (s,ns) = if (null ns)
+                   then Nothing
+                   else Just [ Paragraph
+                               [Text
+                                $ concat ["These functions are those that are "
+                                         , s, ":"]]
+                             , Paragraph [Text $ showNodes ns]]
+      ps = concat . catMaybes
+           $ map rpt [ ("available for use and roots",wntd)
+                     , ("available for use but not roots",ntWd)
+                     , ("not available for use but roots",ntRs)]
+      elem = Section title ps
+      title = Text "Import root analysis"
+
+
+cycleCompAnal    :: CodeData -> Maybe DocElement
+cycleCompAnal cd = Just $ Section title [par]
+    where
+      cc = cyclomaticComplexity cd
+      title = Text "Overall Cyclomatic Complexity"
+      par = Paragraph [text, textAfter, link]
+      text = Text
+             $ printf "The overall cyclomatic complexity is: %d" cc
+      textAfter = Text "For more information on cyclomatic complexity, \
+                       \please see:"
+      link = DocLink (Text "Wikipedia: Cyclomatic Complexity")
+                     (URL "http://en.wikipedia.org/wiki/Cyclomatic_complexity")
+
+
+coreAnal    :: CodeData -> Maybe DocElement
+coreAnal cd = Just elem
+    where
+      core = applyAlg coreOf cd
+      p = "codeCore"
+      label = "Overall core"
+      hdr = Paragraph [Text "The core of software can be thought of as \
+                             \the part where all the work is actually done."]
+      empMsg = Paragraph [Text "The code is a tree."]
+      anal = if (isEmpty core)
+             then empMsg
+             else GraphImage (toGraph p label core)
+      elem = Section title [hdr, anal]
+      title = Text "Overall Core analysis"
+
+
+collapseAnal    :: CodeData -> Maybe DocElement
+collapseAnal cd = Just elem
+    where
+      gc = applyAlg collapseGraph cd
+      p = "codeCollapsed"
+      label = "Collapsed view of the entire codebase"
+      hdr = Paragraph [Text "The collapsed view of code collapses \
+                            \down all cliques, cycles, chains, etc. to \
+                            \make the graph tree-like." ]
+      gr = GraphImage (toGraph p label gc)
+      elem = Section title [hdr, gr]
+      title = Text "Collapsed view of the entire codebase"
diff --git a/Analyse/Imports.hs b/Analyse/Imports.hs
new file mode 100644
--- /dev/null
+++ b/Analyse/Imports.hs
@@ -0,0 +1,166 @@
+{-
+Copyright (C) 2008 Ivan Lazar Miljenovic <Ivan.Miljenovic@gmail.com>
+
+This file is part of SourceGraph.
+
+SourceGraph is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+-}
+
+{- |
+   Module      : Analyse.Imports
+   Description : Analyse module imports.
+   Copyright   : (c) Ivan Lazar Miljenovic 2008
+   License     : GPL-3 or later.
+   Maintainer  : Ivan.Miljenovic@gmail.com
+
+   Analysis of Haskell module importing.
+ -}
+module Analyse.Imports (analyseImports) where
+
+import Parsing.Types
+import Analyse.Utils
+
+import Data.Graph.Analysis
+
+import Data.Maybe
+import Text.Printf
+import System.Random
+
+type ImportData = GraphData ModuleName
+
+-- | Analyse the imports present in the software.  Takes in a random seed
+--   as well as a list of all modules exported.
+analyseImports :: (RandomGen g) => g -> [ModuleName] -> HaskellModules
+               -> DocElement
+analyseImports g exps hm = Section title elems
+    where
+      id = importsToGraph exps hm
+      title = Text "Analysis of module imports"
+      elems = catMaybes
+              $ map ($id) [ graphOf
+                          , clustersOf g
+                          , cycleCompAnal
+                          , rootAnal
+                          , componentAnal
+                          , cycleAnal
+                          , chainAnal
+                          ]
+
+importsToGraph          :: [ModuleName] -> HaskellModules -> ImportData
+importsToGraph exps hms = importData params
+    where
+      params = Params { dataPoints    = modulesIn hms
+                      , relationships = moduleImports hms
+                      , roots         = exps
+                      , directed      = True
+                      }
+
+graphOf    :: ImportData -> Maybe DocElement
+graphOf id = Just $ Section title [gi]
+    where
+      title = Text "Visualisation of imports"
+      gi = GraphImage $ applyAlg dg id
+      dg g = toGraph "imports" label g
+      label = "Import visualisation"
+
+clustersOf      :: (RandomGen g) => g -> ImportData -> Maybe DocElement
+clustersOf g id = Just $ Section title [text, gi, textAfter, cw, rng]
+    where
+      title = Text "Visualisation of module groupings"
+      gi = GraphImage $ applyAlg dg id
+      text = Paragraph [Text "Here is the current module groupings:"]
+      dg gr = toClusters "importCluster" label gr
+      label = "Module groupings"
+      textAfter = Paragraph [Text "Here are two proposed module groupings:"]
+      cw = GraphImage
+           . toClusters "importCW" "Chinese Whispers module groupings"
+           $ applyAlg (chineseWhispers g) id
+      rng = GraphImage
+            . toClusters "importRNG" "Relative Neighbourhood module groupings"
+            $ applyAlg relativeNeighbourhood id
+
+componentAnal :: ImportData -> Maybe DocElement
+componentAnal id
+    | single comp = Nothing
+    | otherwise   = Just elem
+    where
+      comp = applyAlg componentsOf id
+      len = length comp
+      elem = Section title [Paragraph [Text text]]
+      title = Text "Import component analysis"
+      text = printf "The imports have %d components.  \
+                     \You may wish to consider splitting the code up." len
+
+cycleAnal :: ImportData -> Maybe DocElement
+cycleAnal id
+    | null cycs = Nothing
+    | otherwise = Just elem
+    where
+      cycs = applyAlg cyclesIn id
+      cycs' = map (Paragraph .return . Text . showCycle) cycs
+      text = Text "The imports have the following cycles:"
+      textAfter = Text "Whilst this is valid, it may make it difficult \
+                       \to use in ghci, etc."
+      elem = Section title
+             $ (Paragraph [text]) : cycs' ++ [Paragraph [textAfter]]
+      title = Text "Cycle analysis of imports"
+
+chainAnal :: ImportData -> Maybe DocElement
+chainAnal id
+    | null chns = Nothing
+    | otherwise = Just elem
+    where
+      chns = applyAlg chainsIn id
+      chns' = map (Paragraph .return . Text . showPath) chns
+      text = Text "The imports have the following chains:"
+      textAfter = Text "These chains can all be compressed down to \
+                       \a single module."
+      elem = Section title $
+             [Paragraph [text]] ++ chns' ++ [Paragraph [textAfter]]
+      title = Text "Import chain analysis"
+
+rootAnal :: ImportData -> Maybe DocElement
+rootAnal id
+    | asExpected = Nothing
+    | otherwise  = Just elem
+    where
+      (wntd, ntRs, ntWd) = classifyRoots id
+      asExpected = (null ntRs) && (null ntWd)
+      rpt (s,ns) = if (null ns)
+                   then Nothing
+                   else Just [ Paragraph
+                               [Text
+                                $ concat ["These modules are those that are "
+                                         , s, ":"]]
+                             , Paragraph [Text $ showNodes ns]]
+      ps = concat . catMaybes
+           $ map rpt [ ("in the export list and roots",wntd)
+                     , ("in the export list but not roots",ntWd)
+                     , ("not in the export list but roots",ntRs)]
+      elem = Section title ps
+      title = Text "Import root analysis"
+
+cycleCompAnal    :: ImportData -> Maybe DocElement
+cycleCompAnal id = Just $ Section title [par]
+    where
+      cc = cyclomaticComplexity id
+      title = Text "Cyclomatic Complexity of imports"
+      par = Paragraph [text, textAfter, link]
+      text = Text
+             $ printf "The cyclomatic complexity of the imports is: %d" cc
+      textAfter = Text "For more information on cyclomatic complexity, \
+                       \please see:"
+      link = DocLink (Text "Wikipedia: Cyclomatic Complexity")
+                     (URL "http://en.wikipedia.org/wiki/Cyclomatic_complexity")
diff --git a/Analyse/Module.hs b/Analyse/Module.hs
new file mode 100644
--- /dev/null
+++ b/Analyse/Module.hs
@@ -0,0 +1,216 @@
+{-
+Copyright (C) 2008 Ivan Lazar Miljenovic <Ivan.Miljenovic@gmail.com>
+
+This file is part of SourceGraph.
+
+SourceGraph is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+-}
+
+{- |
+   Module      : Analyse.Module
+   Description : Analyse modules.
+   Copyright   : (c) Ivan Lazar Miljenovic 2008
+   License     : GPL-3 or later.
+   Maintainer  : Ivan.Miljenovic@gmail.com
+
+   Analysis of Haskell modules.
+ -}
+module Analyse.Module(analyseModules) where
+
+import Parsing.Types
+import Analyse.Utils
+
+import Data.Graph.Analysis
+
+import Data.Maybe
+import Text.Printf
+
+-- -----------------------------------------------------------------------------
+
+-- Helper types
+
+-- | Shorthand type
+type FunctionData = (String, GraphData AString)
+
+-- -----------------------------------------------------------------------------
+
+-- Analysing.
+
+-- | Performs analysis of all modules present in the 'HaskellModules' provided.
+analyseModules :: HaskellModules -> DocElement
+analyseModules = Section (Text "Analysis of each module")
+                 . map analyseModule . hModulesIn
+
+-- | Performs analysis of the given 'HaskellModule'.
+analyseModule    :: HaskellModule -> DocElement
+analyseModule hm = Section title elems
+    where
+      m = show $ moduleName hm
+      fd = moduleToGraph hm
+      elems = catMaybes
+              $ map ($fd) [ graphOf
+                          , collapseAnal
+                          , coreAnal
+                          , cycleCompAnal
+                          , rootAnal
+                          , componentAnal
+                          , cliqueAnal
+                          , cycleAnal
+                          , chainAnal
+                          ]
+      title = Grouping [ Text "Analysis of"
+                       , Emphasis (Text m)]
+
+-- | Convert the module to the /Graphalyze/ format.
+moduleToGraph    :: HaskellModule -> FunctionData
+moduleToGraph hm = (show $ moduleName hm, fd')
+    where
+      fd' = manipulateNodes (AS . name) fd
+      fd = importData params
+      funcs = functions hm
+      params = Params { dataPoints    = functionsIn funcs
+                      , relationships = functionEdges funcs
+                      , roots         = exports hm
+                      , directed      = True
+                      }
+
+graphOf        :: FunctionData -> Maybe DocElement
+graphOf (m,fd) = Just $ Section title [gi]
+    where
+      title = Grouping [ Text "Visualisation of"
+                       , Emphasis (Text m)]
+      gi = GraphImage $ applyAlg dg fd
+      dg g = toGraph m label g
+      label = unwords ["Diagram of:", m]
+
+componentAnal :: FunctionData -> Maybe DocElement
+componentAnal (m,fd)
+    | single comp = Nothing
+    | otherwise   = Just elem
+    where
+      comp = applyAlg componentsOf fd
+      len = length comp
+      elem = Section title [Paragraph [Text text]]
+      title = Grouping [ Text "Component analysis of"
+                       , Emphasis (Text m)]
+      text = printf "The module %s has %d components.  \
+                     \You may wish to consider splitting it up." m len
+
+cliqueAnal :: FunctionData -> Maybe DocElement
+cliqueAnal (m,fd)
+    | null clqs = Nothing
+    | otherwise = Just elem
+    where
+      clqs = applyAlg cliquesIn fd
+      clqs' = map (Paragraph . return . Text . showNodes) clqs
+      text = Text $ printf "The module %s has the following cliques:" m
+      elem = Section title $ (Paragraph [text]) : clqs'
+      title = Grouping [ Text "Clique analysis of"
+                       , Emphasis (Text m)]
+
+cycleAnal :: FunctionData -> Maybe DocElement
+cycleAnal (m,fd)
+    | null cycs = Nothing
+    | otherwise = Just elem
+    where
+      cycs = applyAlg uniqueCycles fd
+      cycs' = map (Paragraph . return . Text . showCycle) cycs
+      text = Text $ printf "The module %s has the following non-clique \
+                            \cycles:" m
+      elem = Section title $ (Paragraph [text]) : cycs'
+      title = Grouping [ Text "Cycle analysis of"
+                       , Emphasis (Text m)]
+
+chainAnal :: FunctionData -> Maybe DocElement
+chainAnal (m,fd)
+    | null chns = Nothing
+    | otherwise = Just elem
+    where
+      chns = applyAlg chainsIn fd
+      chns' = map (Paragraph . return . Text . showPath) chns
+      text = Text $ printf "The module %s has the following chains:" m
+      textAfter = Text "These chains can all be compressed down to \
+                       \a single function."
+      elem = Section title
+             $ [Paragraph [text]] ++ chns' ++ [Paragraph [textAfter]]
+      title = Grouping [ Text "Chain analysis of"
+                       , Emphasis (Text m)]
+
+rootAnal :: FunctionData -> Maybe DocElement
+rootAnal (m,fd)
+    | asExpected = Nothing
+    | otherwise  = Just elem
+    where
+      (wntd, ntRs, ntWd) = classifyRoots fd
+      asExpected = (null ntRs) && (null ntWd)
+      rpt (s,ns) = if (null ns)
+                   then Nothing
+                   else Just [ Paragraph
+                               [Text
+                                $ concat ["These nodes are those that are "
+                                         , s, ":"]]
+                             , Paragraph [Text $ showNodes ns]]
+      ps = concat . catMaybes
+           $ map rpt [ ("in the export list and roots",wntd)
+                     , ("in the export list but not roots",ntWd)
+                     , ("not in the export list but roots",ntRs)]
+      elem = Section title ps
+      title = Grouping [ Text "Root analysis of"
+                       , Emphasis (Text m)]
+
+coreAnal        :: FunctionData -> Maybe DocElement
+coreAnal (m,fd) = Just elem
+    where
+      core = applyAlg coreOf fd
+      p = m ++ "_core"
+      label = unwords ["Core of", m]
+      hdr = Paragraph [Text "The core of a module can be thought of as \
+                             \the part where all the work is actually done."]
+      empMsg = Paragraph [Text $ printf "The module %s is a tree." m]
+      anal = if (isEmpty core)
+             then empMsg
+             else GraphImage (toGraph p label core)
+      elem = Section title [hdr, anal]
+      title = Grouping [ Text "Core analysis of"
+                       , Emphasis (Text m)]
+
+collapseAnal :: FunctionData -> Maybe DocElement
+collapseAnal (m,fd) = Just elem
+    where
+      gc = applyAlg collapseGraph fd
+      p = m ++ "_collapsed"
+      label = unwords ["Collapsed view of", m]
+      hdr = Paragraph [Text "The collapsed view of a module collapses \
+                            \down all cliques, cycles, chains, etc. to \
+                            \make the graph tree-like." ]
+      gr = GraphImage (toGraph p label gc)
+      elem = Section title [hdr, gr]
+      title = Grouping [ Text "Collapsed view of"
+                       , Emphasis (Text m)]
+
+
+cycleCompAnal        :: FunctionData -> Maybe DocElement
+cycleCompAnal (m,fd) = Just $ Section title pars
+    where
+      cc = cyclomaticComplexity fd
+      title = Grouping [ Text "Cyclomatic Complexity of"
+                       , Emphasis (Text m)]
+      pars = [Paragraph [text], Paragraph [textAfter, link]]
+      text = Text
+             $ printf "The cyclomatic complexity of %s is: %d." m cc
+      textAfter = Text "For more information on cyclomatic complexity, \
+                       \please see: "
+      link = DocLink (Text "Wikipedia: Cyclomatic Complexity")
+                     (URL "http://en.wikipedia.org/wiki/Cyclomatic_complexity")
diff --git a/Analyse/Utils.hs b/Analyse/Utils.hs
new file mode 100644
--- /dev/null
+++ b/Analyse/Utils.hs
@@ -0,0 +1,63 @@
+{-
+Copyright (C) 2008 Ivan Lazar Miljenovic <Ivan.Miljenovic@gmail.com>
+
+This file is part of SourceGraph.
+
+SourceGraph is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+-}
+
+{- |
+   Module      : Analyse.Utils
+   Description : Utility functions and types for analysis.
+   Copyright   : (c) Ivan Lazar Miljenovic 2008
+   License     : GPL-3 or later.
+   Maintainer  : Ivan.Miljenovic@gmail.com
+
+   Utility functions and types for analysis.
+ -}
+module Analyse.Utils where
+
+import Data.Graph.Analysis
+import Data.GraphViz
+import Data.Graph.Inductive hiding (graphviz)
+
+
+-- | Defining a wrapper around String to define a sensible 'show' definition.
+newtype AString = AS String
+    deriving (Eq, Ord)
+
+instance Show AString where
+    show (AS f) = f
+
+-- | Create a graph in the 'DocGraph' format.
+--   Takes in the filepath, title and the graph to be drawn.
+toGraph       :: (Show a) => FilePath -> String -> AGr a -> DocGraph
+toGraph p t g = (p,Text t,dg)
+    where
+      dg = graphviz t g
+
+toClusters       :: (Show c, ClusterLabel a c) => FilePath -> String
+                 -> AGr a -> DocGraph
+toClusters p t g = (p, Text t, dg)
+    where
+      dg = graphvizClusters t g
+
+-- | Cyclomatic complexity
+cyclomaticComplexity    :: GraphData a -> Int
+cyclomaticComplexity gd = e - n + 2*p
+    where
+      p = length $ applyAlg componentsOf gd
+      n = applyAlg noNodes gd
+      e = length $ applyAlg labEdges gd
diff --git a/COPYRIGHT b/COPYRIGHT
new file mode 100644
--- /dev/null
+++ b/COPYRIGHT
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
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+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
diff --git a/Main.hs b/Main.hs
new file mode 100644
--- /dev/null
+++ b/Main.hs
@@ -0,0 +1,208 @@
+{-
+Copyright (C) 2008 Ivan Lazar Miljenovic <Ivan.Miljenovic@gmail.com>
+
+This program is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+-}
+
+{- |
+   Module      : Main
+   Description : Analyse source code as a graph.
+   Copyright   : (c) Ivan Lazar Miljenovic 2008
+   License     : GPL-3 or later.
+   Maintainer  : Ivan.Miljenovic@gmail.com
+
+   The executable file for the /SourceGraph/ programme.
+
+   This was written as part of my mathematics honours thesis,
+   /Graph-Theoretic Analysis of the Relationships in Discrete Data/.
+ -}
+module Main where
+
+import Parsing
+import Analyse
+
+import Data.Graph.Analysis
+import Data.Graph.Analysis.Reporting.Pandoc
+
+import Distribution.Package
+import Distribution.PackageDescription hiding (author)
+import Distribution.Verbosity
+
+import Data.List
+import Data.Maybe
+import System.IO
+import System.Directory
+import System.FilePath
+import System.Random
+import System.Environment
+import Control.Monad
+import Control.Exception
+
+main :: IO ()
+main = do input <- getArgs
+          let mcbl = getCabalFile input
+          case mcbl of
+            Nothing
+                -> putErrLn "Please pass in a .cabal file"
+            Just cbl
+                -> do pcbl <- parseCabal cbl
+                      case pcbl of
+                        Nothing
+                            -> putErrLn $ unwords [cbl,"is unparseable"]
+                        Just (nm,exps)
+                            -> do let dir = dropFileName cbl
+                                  dir' <- if null dir
+                                            then getCurrentDirectory
+                                            else return dir
+                                  hms <- parseFilesFrom dir'
+                                  analyseCode dir nm exps hms
+
+programName :: String
+programName = "SourceGraph"
+
+programVersion :: String
+programVersion = "0.1"
+
+putErrLn :: String -> IO ()
+putErrLn = hPutStrLn stderr
+
+-- -----------------------------------------------------------------------------
+
+parseCabal    :: FilePath -> IO (Maybe (String, [ModuleName]))
+parseCabal fp = do gpd <- try $ readPackageDescription silent fp
+                   case gpd of
+                     (Right gpd') -> return (Just $ parse gpd')
+                     (Left _)     -> return Nothing
+    where
+      parse pd = (nm, exp')
+          where
+            cbl = packageDescription pd
+            nm = pkgName $ package cbl
+            cexes :: [Executable]
+            cexes = map (condTreeData .snd) $ condExecutables pd
+            exes = executables cbl
+            clib = condLibrary pd
+            lib = library cbl
+            exp | not $ null cexes = nub $ map (dropExtension . modulePath) cexes
+                | not $ null exes  = nub . map dropExtension $ exeModules cbl
+                | isJust clib      = exposedModules . condTreeData
+                                     $ fromJust clib
+                | isJust lib       = exposedModules $ fromJust lib
+                | otherwise        = error "No exposed modules"
+            exp' = map createModule exp
+
+getCabalFile :: [FilePath] -> Maybe FilePath
+getCabalFile = listToMaybe . filter isCabalFile
+    where
+      isCabalFile f  = (takeExtension f) == (extSeparator : "cabal")
+
+-- -----------------------------------------------------------------------------
+
+-- | Recursively parse all files from this directory
+parseFilesFrom    :: FilePath -> IO HaskellModules
+parseFilesFrom fp = do files <- getHaskellFilesFrom fp
+                       cnts <- readFiles files
+                       return $ parseHaskell cnts
+
+-- -----------------------------------------------------------------------------
+
+-- Reading in the files.
+
+-- | Recursively find all Haskell source files from the current directory.
+getHaskellFilesFrom :: FilePath -> IO [FilePath]
+getHaskellFilesFrom fp
+    = do isDir <- doesDirectoryExist fp -- Ensure it's a directory.
+         if isDir
+            then do r <- try getFilesIn -- Ensure we can read the directory.
+                    case r of
+                      (Right fs) -> return fs
+                      (Left _)   -> return []
+            else return []
+    where
+      -- Filter out "." and ".." to stop infinite recursion.
+      nonTrivialContents :: IO [FilePath]
+      nonTrivialContents = do contents <- getDirectoryContents fp
+                              let contents' = filter (not . isTrivial) contents
+                              return $ map (fp </>) contents'
+      getFilesIn :: IO [FilePath]
+      getFilesIn = do contents <- nonTrivialContents
+                      (dirs,files) <- partitionM doesDirectoryExist contents
+                      let hFiles = filter isHaskellFile files
+                      recursiveFiles <- concatMapM getHaskellFilesFrom dirs
+                      return (hFiles ++ recursiveFiles)
+
+-- | Determine if this is the path of a Haskell file.
+isHaskellFile   :: FilePath -> Bool
+isHaskellFile f = (takeExtension f) `elem` haskellExtensions
+    where
+      haskellExtensions = map (extSeparator :) ["hs","lhs"]
+
+-- | Read in all the files that it can.
+readFiles :: [FilePath] -> IO [FileContents]
+readFiles = liftM catMaybes . mapM readFileContents
+
+-- | Try to read the given file.
+readFileContents   :: FilePath -> IO (Maybe FileContents)
+readFileContents f = do cnts <- try $ readFile f
+                        case cnts of
+                          (Right str) -> return $ Just (f,str)
+                          (Left _)    -> return Nothing
+
+-- | A version of 'concatMap' for use in monads.
+concatMapM   :: (Monad m) => (a -> m [b]) -> [a] -> m [b]
+concatMapM f = liftM concat . mapM f
+
+-- | A version of 'partition' for use in monads.
+partitionM      :: (Monad m) => (a -> m Bool) -> [a] -> m ([a], [a])
+partitionM _ [] = return ([],[])
+partitionM p (x:xs) = do ~(ts,fs) <- partitionM p xs
+                         matches <- p x
+                         if matches
+                            then return (x:ts,fs)
+                            else return (ts,x:fs)
+
+-- | Trivial paths are the current directory and the parent directory.
+isTrivial      :: FilePath -> Bool
+isTrivial "."  = True
+isTrivial ".." = True
+isTrivial _    = False
+
+-- -----------------------------------------------------------------------------
+
+analyseCode                :: FilePath -> String -> [ModuleName]
+                           -> HaskellModules -> IO ()
+analyseCode fp nm exps hms = do d <- today
+                                g <- newStdGen
+                                let dc = doc d g
+                                out <- createDocument pandocHtml dc
+                                case out of
+                                  Just fp -> success fp
+                                  Nothing -> failure
+    where
+      doc d g = Doc { rootDirectory = rt
+                    , fileFront     = nm
+                    , title         = t
+                    , author        = a
+                    , date          = d
+                    , content       = c g
+                    }
+      rt = fp </> programName
+      sv s v = s ++ " (version " ++ v ++ ")"
+      t = Grouping [Text "Analysis of", Emphasis $ Text nm]
+      a = unwords [ "Analysed by", sv programName programVersion
+                  , "using", sv "Graphalyze" version]
+      c g = analyse g exps hms
+      success fp = putStrLn $ unwords ["Report generated at:",fp]
+      failure = putErrLn "Unable to generate report"
diff --git a/Parsing.hs b/Parsing.hs
new file mode 100644
--- /dev/null
+++ b/Parsing.hs
@@ -0,0 +1,68 @@
+{-
+Copyright (C) 2008 Ivan Lazar Miljenovic <Ivan.Miljenovic@gmail.com>
+
+This file is part of SourceGraph.
+
+SourceGraph is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+-}
+
+{- |
+   Module      : Parsing
+   Description : Parse the given Haskell modules.
+   Copyright   : (c) Ivan Lazar Miljenovic 2008
+   License     : GPL-3 or later.
+   Maintainer  : Ivan.Miljenovic@gmail.com
+
+   Parse the given Haskell modules.
+ -}
+module Parsing
+    ( FileContents
+    , HaskellModules
+    , ModuleName
+    , createModule
+    , parseHaskell
+    ) where
+
+import Parsing.Types
+import Parsing.ParseModule
+
+import Language.Haskell.Exts.Parser hiding (parseModule)
+import Language.Haskell.Exts.Syntax(HsModule)
+
+import Data.Maybe
+
+type FileContents = (FilePath,String)
+
+-- | Parse all the files and return the map.
+--   This uses laziness to evaluate the 'HaskellModules' result
+--   whilst also using it to parse all the modules to create it.
+parseHaskell    :: [FileContents] -> HaskellModules
+parseHaskell fc = hms
+    where
+      ms = parseFiles fc
+      hms = createModuleMap hss
+      hss = map (parseModule hms) ms
+
+-- | Attempt to parse an individual file.
+parseFile       :: FileContents -> Maybe HsModule
+parseFile (p,f) = case (parseModuleWithMode mode f) of
+                    (ParseOk hs) -> Just hs
+                    _            -> Nothing
+    where
+      mode = ParseMode p
+
+-- | Parse all the files that you can.
+parseFiles :: [FileContents] -> [HsModule]
+parseFiles = catMaybes . map parseFile
diff --git a/Parsing/ParseModule.hs b/Parsing/ParseModule.hs
new file mode 100644
--- /dev/null
+++ b/Parsing/ParseModule.hs
@@ -0,0 +1,389 @@
+{-
+Copyright (C) 2008 Ivan Lazar Miljenovic <Ivan.Miljenovic@gmail.com>
+
+This file is part of SourceGraph.
+
+SourceGraph is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+-}
+
+{- |
+   Module      : Parsing.ParseModule
+   Description : Parse a Haskell module.
+   Copyright   : (c) Ivan Lazar Miljenovic 2008
+   License     : GPL-3 or later.
+   Maintainer  : Ivan.Miljenovic@gmail.com
+
+   Parse a Haskell module.
+ -}
+module Parsing.ParseModule (parseModule) where
+
+import Parsing.Types
+
+import Language.Haskell.Exts.Syntax
+
+import Data.List
+import Data.Maybe
+import qualified Data.Map as M
+
+-- -----------------------------------------------------------------------------
+
+{- |
+   Parses a Haskell Module in 'HsModule' format into the internal
+   'HaskellModule' format.  The 'HaskellModules' parameter is used
+   to look up the export lists of all imported functions.
+
+   The resulting 'HaskellModule'\'s 'functions' field is a 'Map' that
+   maps all functions defined in this module to those functions
+   accessible to them from modules in the first parameter.
+
+   At the moment, parsing works only on stand-alone functions, i.e. no
+   data structures, class declarations or instance declarations.
+ -}
+parseModule :: HaskellModules -> HsModule -> HaskellModule
+parseModule hm (HsModule _ md exps imp decls) = Hs { moduleName = m
+                                                   , imports    = imps'
+                                                   , exports    = exps'
+                                                   , functions  = fs
+                                                   }
+    where
+      m = createModule' md
+      (imps,fl) = parseImports hm imp
+      imps' = map fromModule imps
+      -- If there isn't an export list, export everything.
+      -- The exception is if there isn't an export list but there is a
+      -- /main/ function, in which case only export that.
+      exps' | isJust exps = parseExports m $ fromJust exps
+            | hasMain     = [mainFunc]
+            | otherwise   = defFuncs
+      mainFunc = F m (nameOf main_name) Nothing
+      hasMain = elem mainFunc defFuncs
+      fs = M.fromList funcs
+      -- We utilise "Tying-the-knot" here to simultaneously update the
+      -- lookup map as well as utilise that lookup map.
+      funcs = functionCalls m fl' decls
+      defFuncs = map fst funcs
+      flInternal = createLookup defFuncs
+      fl' = M.union fl flInternal
+
+-- | Create the 'ModuleName'.
+createModule' :: Module -> ModuleName
+createModule' = createModule . modName
+
+-- | Parse all import declarations, and create the 'FunctionLookup' map
+--   on the imports.
+parseImports       :: HaskellModules -> [HsImportDecl]
+                   -> ([HsImport],FunctionLookup)
+parseImports hm is = (is', flookup)
+    where
+      is' = catMaybes $ map (parseImport hm) is
+      flookup = createLookup $ concatMap importList is'
+
+-- | Convert the import declaration.  Assumes that all functions imported
+--   are indeed valid.
+parseImport :: HaskellModules -> HsImportDecl -> Maybe HsImport
+parseImport hm im
+    | not (M.member m hm) = Nothing -- This module isn't available.
+    | otherwise           = Just $ I m qual imps
+    where
+      mn = importModule im
+      m = createModule' mn
+      -- Determine if this module has been imported with an /as/ prefix.
+      -- If not, it has the entire name as its prefix.
+      qual = fmap modName (importAs im)
+      qual' = fromMaybe (modName mn) qual
+      -- Try and get the functions that this module exports.
+      mExport = exports $ hm M.! m
+      mImport = case (importSpecs im) of
+                  -- Everything was imported
+                  Nothing -> mExport
+                  -- Only specific items were imported.
+                  Just (True, ims) -> getFunctions m ims
+                  -- These items were hidden.
+                  Just (False, hd) -> mExport \\ (getFunctions m hd)
+      qImport = map (addQual qual') mImport
+      imps = if (importQualified im)
+             then qImport
+             else mImport ++ qImport
+      getFunctions m = map (setModule m) . getItems
+      setModule m f = F m f Nothing
+      getItems = catMaybes . map getImport
+      -- We only care about functions, variables, etc.
+      getImport (HsIVar nm) = Just (nameOf nm)
+      getImport _           = Nothing
+
+
+
+-- | Parsing the export list.
+parseExports   :: ModuleName -> [HsExportSpec] -> [Function]
+parseExports m = catMaybes . map (parseExport m)
+    where
+      -- We only care about exported functions.
+      parseExport m (HsEVar qn) = fmap (setFuncModule m) $ hsName qn
+      parseExport _ _           = Nothing
+
+-- | Parse the contents of the module.  For each stand-alone function,
+--   return it along with all other known functions that it calls.
+functionCalls         :: ModuleName -> FunctionLookup -> [HsDecl]
+                      -> [(Function, [Function])]
+functionCalls m fl ds = catMaybes $ map (functionCall m fl) ds
+
+-- | Parse an individual 'HsDecl'.  We only parse 'HsFunBind' and 'HsPatBind'
+--   declarations, as they're the only ones that define stand-alone functions.
+functionCall :: ModuleName -> FunctionLookup -> HsDecl
+             -> Maybe (Function, [Function])
+functionCall m fl d@(HsFunBind {}) = fmap (flip (,) calls) nm
+    where
+      nm = listToMaybe . setFuncModules m $ functionNames d
+      calls = lookupFunctions fl $ hsNames d
+functionCall m fl d@(HsPatBind {}) = fmap (flip (,) calls) nm
+    where
+      nm = listToMaybe . setFuncModules m $ functionNames d
+      calls = lookupFunctions fl $ hsNames d
+functionCall _ _ _ = Nothing
+
+-- -----------------------------------------------------------------------------
+
+-- Utility functions.
+
+-- | Extract the actual name of the 'Module'.
+modName            :: Module -> String
+modName (Module m) = m
+
+-- | A true list-difference function.  The default '\\\\' function only deletes
+--   the first instance of each value, this deletes /all/ of them.
+diff       :: (Eq a) => [a] -> [a] -> [a]
+diff xs ys = filter (not . flip elem ys) xs
+
+-- | Specify the qualification that this function was imported with.
+addQual     :: String -> Function -> Function
+addQual q f = f { qualdBy = Just q }
+
+-- -----------------------------------------------------------------------------
+
+-- | Parsing of names, identifiers, etc.
+
+nameOf              :: HsName -> String
+nameOf (HsIdent  i) = i
+nameOf (HsSymbol s) = s
+
+-- The class of parsed items which represent a single element.
+class HsItem f where
+    hsName :: f -> Maybe Function
+
+instance HsItem HsName where
+    hsName nm = Just $ defFunc (nameOf nm)
+
+-- Implicit parameters
+instance HsItem HsIPName where
+    hsName (HsIPDup v) = Just $ defFunc v
+    hsName (HsIPLin v) = Just $ defFunc v
+
+-- Qualified variables and constructors
+instance HsItem HsQName where
+    hsName (Qual mod name) = fmap (addQual (modName mod)) (hsName name)
+    hsName (UnQual name)   = hsName name
+    -- inbuilt special syntax, e.g. [], (,), etc.
+    hsName (Special _)     = Nothing
+
+-- Infix operators.
+instance HsItem HsQOp where
+    hsName (HsQVarOp qn) = hsName qn
+    hsName (HsQConOp qn) = hsName qn
+
+-- Operators in infix declarations
+instance HsItem HsOp where
+    hsName (HsVarOp nm) = hsName nm
+    hsName (HsConOp nm) = hsName nm
+
+-- Items in import statements
+instance HsItem HsCName where
+    hsName (HsVarName nm) = hsName nm
+    hsName (HsConName nm) = hsName nm
+
+-- We don't care about literals
+instance HsItem HsLiteral where
+    hsName _ = Nothing
+
+-------------------------------------------------------------------------------
+
+-- | Functions, blocks, etc.
+
+class HsItemList vs where
+    hsNames :: vs -> [Function]
+
+-- | A \"compatibility\" function to pseudo-convert an instance of 'HsItem'
+--   into one that acts like one from 'HsItemList'
+hsName'        :: (HsItem i) => i -> [Function]
+hsName' i = maybeToList (hsName i)
+
+-- A list of 'HsItemList' instances can be treated as a single instance.
+instance (HsItemList vs) => HsItemList [vs] where
+    hsNames vss = concatMap hsNames vss
+
+instance HsItemList HsPat where
+    hsNames (HsPVar var)              = hsName' var
+    hsNames (HsPLit _)                = []
+    hsNames (HsPNeg pat)              = hsNames pat
+    hsNames (HsPInfixApp pat1 _ pat2) = (hsNames pat1)
+                                        ++ (hsNames pat2)
+    hsNames (HsPApp _ pats)           = hsNames pats
+    hsNames (HsPTuple pats)           = hsNames pats
+    hsNames (HsPList pats)            = hsNames pats
+    hsNames (HsPParen pat)            = hsNames pat
+    hsNames (HsPRec _ pfields)        = hsNames pfields
+    hsNames (HsPAsPat name pat)       = hsName' name
+                                        ++ hsNames pat
+    hsNames HsPWildCard               = []
+    hsNames (HsPIrrPat pat)           = hsNames pat
+    -- Ignore HaRP and Hsx extensions for now
+    hsNames _                         = []
+
+instance HsItemList HsPatField where
+    hsNames (HsPFieldPat _ pat) = hsNames pat
+
+instance HsItemList HsBinds where
+    hsNames (HsBDecls dcls) = hsNames dcls
+    hsNames (HsIPBinds ibs) = hsNames ibs
+
+instance HsItemList HsExp where
+    hsNames (HsVar qn)                = hsName' qn
+    hsNames (HsIPVar ip)              = hsName' ip
+    hsNames (HsCon _)                 = []
+    hsNames (HsLit _)                 = []
+    hsNames (HsInfixApp e1 q e2)      = hsName' q
+                                        ++ hsNames e1 ++ hsNames e2
+    hsNames (HsApp e1 e2)             = hsNames e1 ++ hsNames e2
+    hsNames (HsNegApp e)              = hsNames e
+    hsNames (HsLambda _ ps e)         = (hsNames e) `diff` (hsNames ps)
+    hsNames (HsLet bs e)              = (hsNames bs ++ hsNames e)
+                                        `diff` (functionNames bs)
+    hsNames (HsDLet ips e)            = (hsNames ips ++ hsNames e)
+                                        `diff` (functionNames ips)
+    hsNames (HsWith e ips)            = (hsNames ips ++ hsNames e)
+                                        `diff` (functionNames ips)
+    hsNames (HsIf i t e)              = hsNames [i,t,e]
+    hsNames (HsCase e as)             = hsNames e ++ hsNames as
+    hsNames (HsDo stmts)              = hsNames stmts
+    hsNames (HsMDo stmts)             = hsNames stmts
+    hsNames (HsTuple es)              = hsNames es
+    hsNames (HsList es)               = hsNames es
+    hsNames (HsParen e)               = hsNames e
+    hsNames (HsLeftSection e qop)     = hsNames e ++ hsName' qop
+    hsNames (HsRightSection qop e)    = hsNames e ++ hsName' qop
+    hsNames (HsRecConstr _ flds)      = hsNames flds
+    hsNames (HsRecUpdate e flds)      = hsNames e ++ hsNames flds
+    hsNames (HsEnumFrom f)            = hsNames f
+    hsNames (HsEnumFromTo f t)        = hsNames [f,t]
+    hsNames (HsEnumFromThen f th)     = hsNames [f,th]
+    hsNames (HsEnumFromThenTo f th t) = hsNames [f,th,t]
+    hsNames (HsListComp e stmts)      = let svars = functionNames stmts
+                                            e' = hsNames e ++ hsNames stmts
+                                        in e' `diff` svars
+    hsNames (HsExpTypeSig _ e _)      = hsNames e
+    hsNames (HsAsPat _ _)             = [] -- something for FunctionNames?
+    hsNames (HsIrrPat _)              = []
+    -- For now, ignore HaRP, TH and Hsx stuff
+    hsNames _                         = []
+
+instance HsItemList HsFieldUpdate where
+    hsNames (HsFieldUpdate _ e) = hsNames e
+
+instance HsItemList HsAlt where
+    hsNames (HsAlt _ pats rhs bnds) = (rhs' ++ bnds')
+                                      `diff` (lhs ++ bndNames)
+        where
+          lhs = hsNames pats
+          bndNames = functionNames bnds
+          bnds' = hsNames bnds
+          rhs' = hsNames rhs
+
+instance HsItemList HsGuardedAlts where
+    hsNames (HsUnGuardedAlt e) = hsNames e
+    hsNames (HsGuardedAlts gas) = hsNames gas
+
+instance HsItemList HsGuardedAlt where
+    hsNames (HsGuardedAlt _ stmts e) = e' `diff` svars
+        where
+          svars = functionNames stmts
+          e' = hsNames e ++ hsNames stmts
+
+instance HsItemList HsDecl where
+    hsNames (HsFunBind ms)          = hsNames ms
+    hsNames (HsPatBind _ _ rhs bds) = (bds' ++ rhs') `diff` rNames
+        where
+          rNames = functionNames bds
+          bds' = hsNames bds
+          rhs' = hsNames rhs
+    hsNames _                       = []
+
+
+instance HsItemList HsMatch where
+    hsNames (HsMatch _ _ pats rhs bnds) = (rhs' ++ bnds')
+                                          `diff` (lhs ++ bndNames)
+        where
+          lhs = hsNames pats
+          bndNames = functionNames bnds
+          bnds' = hsNames bnds
+          rhs' = hsNames rhs
+
+instance HsItemList HsRhs where
+    hsNames (HsUnGuardedRhs e) = hsNames e
+    hsNames (HsGuardedRhss rs) = hsNames rs
+
+instance HsItemList HsGuardedRhs where
+    hsNames (HsGuardedRhs _ stmts e) = e' `diff` svars
+        where
+          svars = functionNames stmts
+          e' = hsNames e ++ hsNames stmts
+
+instance HsItemList HsStmt where
+    hsNames (HsGenerator _ _ e) = hsNames e
+    hsNames (HsQualifier e)     = hsNames e
+    hsNames (HsLetStmt bnds)    = hsNames bnds
+
+instance HsItemList HsIPBind where
+    hsNames (HsIPBind _ ip e) = e' `diff` ip'
+        where
+          ip' = hsName' ip
+          e' = hsNames e
+
+-- -----------------------------------------------------------------------------
+
+-- | Those parsed elements that represent a function.
+class FunctionNames fn where
+    functionNames :: fn -> [Function]
+
+instance (FunctionNames fn) => FunctionNames [fn] where
+    functionNames = concatMap functionNames
+
+instance FunctionNames HsStmt where
+    functionNames (HsGenerator _ p _) = hsNames p
+    functionNames (HsQualifier _)     = []
+    functionNames (HsLetStmt bnds)    = functionNames bnds
+
+instance FunctionNames HsMatch where
+    functionNames (HsMatch _ nm _ _ _) = hsName' nm
+
+instance FunctionNames HsDecl where
+    functionNames (HsFunBind ms)      = functionNames ms
+    functionNames (HsPatBind _ p _ _) = hsNames p
+    functionNames _                   = []
+
+instance FunctionNames HsBinds where
+    functionNames (HsBDecls decls) = functionNames decls
+    functionNames (HsIPBinds bnds) = functionNames bnds
+
+instance FunctionNames HsIPBind where
+    functionNames (HsIPBind _ ipn _) = hsName' ipn
diff --git a/Parsing/Types.hs b/Parsing/Types.hs
new file mode 100644
--- /dev/null
+++ b/Parsing/Types.hs
@@ -0,0 +1,191 @@
+{-# LANGUAGE MultiParamTypeClasses
+            , TypeSynonymInstances
+ #-}
+
+{-
+Copyright (C) 2008 Ivan Lazar Miljenovic <Ivan.Miljenovic@gmail.com>
+
+This file is part of SourceGraph.
+
+SourceGraph is free software; you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+-}
+
+{- |
+   Module      : Parsing.Types
+   Description : Types for parsing Haskell code.
+   Copyright   : (c) Ivan Lazar Miljenovic 2008
+   License     : GPL-3 or later.
+   Maintainer  : Ivan.Miljenovic@gmail.com
+
+   Types for parsing Haskell modules.
+ -}
+module Parsing.Types where
+
+import Data.Graph.Analysis.Types
+
+import Data.Maybe
+import qualified Data.Map as M
+import Data.Map(Map)
+import Control.Arrow(first)
+
+-- -----------------------------------------------------------------------------
+
+-- | A high-level viewpoint of a Haskell module.
+data HaskellModule = Hs { moduleName :: ModuleName
+                        , imports    :: [ModuleName]
+                        , exports    :: [Function]
+                        , functions  :: FunctionCalls
+                        }
+
+-- | A lookup-map of 'HaskellModule's.
+type HaskellModules = Map ModuleName HaskellModule
+
+-- | Create the 'HaskellModules' lookup map from a list of 'HaskellModule's.
+createModuleMap :: [HaskellModule] -> HaskellModules
+createModuleMap = M.fromList . map (\m -> (moduleName m, m))
+
+modulesIn :: HaskellModules -> [ModuleName]
+modulesIn = M.keys
+
+moduleImports :: HaskellModules -> [(ModuleName,ModuleName)]
+moduleImports = concatMap mkEdges . M.assocs
+    where
+      mkEdges (m,hm) = map ((,) m) $ imports hm
+
+hModulesIn :: HaskellModules -> [HaskellModule]
+hModulesIn = M.elems
+
+getModule      :: HaskellModules -> ModuleName -> Maybe HaskellModule
+getModule hm m = M.lookup m hm
+
+-- -----------------------------------------------------------------------------
+
+-- | The name of a module.  The 'Maybe' component refers to the possible path
+--   of this module.
+data ModuleName = M (Maybe String) String
+                  deriving (Eq, Ord)
+
+instance ClusterLabel ModuleName String where
+    cluster (M p _) = fromMaybe "" p
+    nodelabel (M _ m) = m
+
+-- | The seperator between components of a module.
+moduleSep :: Char
+moduleSep = '.'
+
+-- | Split the module string into a path string and a name string.
+splitMod   :: String -> (String,String)
+splitMod m = case (break (moduleSep ==) m) of
+               (m',"")  -> ("",m')
+               (p,_:m') -> first (addPath p) $ splitMod m'
+
+-- | Add two path components together.
+addPath       :: String -> String -> String
+addPath "" m  = m
+addPath p  "" = p
+addPath p  m  = p ++ (moduleSep : m)
+
+instance Show ModuleName where
+    show (M Nothing m)    = m
+    show (M (Just dir) m) = addPath dir m
+
+-- | Create the 'ModuleName' from its 'String' representation.
+createModule :: String -> ModuleName
+createModule m = case (splitMod m) of
+                   (m',"") -> M Nothing m'
+                   (d,m')  -> M (Just d) m'
+
+-- | A default module, used for when you haven't specified which module
+--   something belongs to yet.
+unknownModule :: ModuleName
+unknownModule = M Nothing "Module Not Found"
+
+-- -----------------------------------------------------------------------------
+
+-- | The import list of a module.
+data HsImport = I { fromModule :: ModuleName
+                  -- | How the module was imported, if it actually was.
+                  , qualAs     :: Maybe String
+                  -- | The functions from this module that were imported.
+                  , importList :: [Function]
+                  }
+
+-- -----------------------------------------------------------------------------
+
+-- | Defines a function.
+data Function = F { inModule :: ModuleName
+                  , name     :: String
+                  , qualdBy  :: Maybe String
+                  }
+                deriving (Eq, Ord)
+
+instance Show Function where
+    show f = addPath (show $ inModule f) (name f)
+
+instance ClusterLabel Function ModuleName where
+    cluster = inModule
+    nodelabel = name
+
+-- | Create a default function with using 'unknownModule'.
+defFunc   :: String -> Function
+defFunc f = F unknownModule f Nothing
+
+-- | Set the module of this function.
+setFuncModule     :: ModuleName -> Function -> Function
+setFuncModule m f = f { inModule = m }
+
+-- | Set the module of these functions.
+setFuncModules :: ModuleName -> [Function] -> [Function]
+setFuncModules m = map (setFuncModule m)
+
+-- | Defines a lookup map between the used qualifier and function name,
+--   and the actual /unqualified/ function.
+type FunctionLookup = Map (Maybe String,String) Function
+
+-- | Create a 'FunctionLookup' map using the given functions.
+createLookup :: [Function] -> FunctionLookup
+createLookup = M.fromList . map addKey
+    where
+      addKey f = ((qualdBy f, name f), f)
+
+-- | Try to lookup the given function.
+functionLookup      :: FunctionLookup -> Function -> Maybe Function
+functionLookup fl f = M.lookup k fl
+    where
+      k = (qualdBy f, name f)
+
+-- | Lookup the given functions, returning only those that are in the
+--   'FunctionLookup' map.
+lookupFunctions    :: FunctionLookup -> [Function] -> [Function]
+lookupFunctions fl = catMaybes . map (functionLookup fl)
+
+type FunctionCalls = Map Function [Function]
+
+-- | Get every function call as a pair.
+functionEdges :: FunctionCalls -> [(Function,Function)]
+functionEdges = concatMap mkEdges . M.assocs
+    where
+      mkEdges (f,fs) = map ((,) f) fs
+
+-- The next two functions are defined to avoid having to import
+-- Data.Map in modules that use this one.
+
+-- | Gets the functions
+functionsIn :: FunctionCalls -> [Function]
+functionsIn = M.keys
+
+-- | Combine multiple function calls
+combineCalls :: [FunctionCalls] -> FunctionCalls
+combineCalls = M.unions
diff --git a/Setup.lhs b/Setup.lhs
new file mode 100644
--- /dev/null
+++ b/Setup.lhs
@@ -0,0 +1,3 @@
+#!/usr/bin/env runhaskell
+> import Distribution.Simple
+> main = defaultMain
diff --git a/SourceGraph.cabal b/SourceGraph.cabal
new file mode 100644
--- /dev/null
+++ b/SourceGraph.cabal
@@ -0,0 +1,36 @@
+Name:                SourceGraph
+Version:             0.1
+Synopsis:            Use graph-theory to analyse your code
+Description:         SourceGraph uses the Graphalyze library to analyse
+                     Cabalized Haskell code.
+Category:            Development
+License:             GPL
+License-file:        COPYRIGHT
+Copyright:           (c) Ivan Lazar Miljenovic
+Author:              Ivan Lazar Miljenovic
+Maintainer:          Ivan.Miljenovic@gmail.com
+Cabal-Version:       >= 1.2
+Build-Type:          Simple
+Tested-With:         GHC==6.8.3
+build-Depends:       base
+
+Flag small_base
+  description: Choose the new smaller, split-up base package.
+
+Executable SourceGraph {
+
+    Main-Is:            Main.hs
+    Other-Modules:      Parsing, Parsing.Types, Parsing.ParseModule,
+                        Analyse, Analyse.Utils, Analyse.Module,
+                                 Analyse.Imports, Analyse.Everything
+    Ghc-Options:        -Wall
+    Ghc-Prof-Options:   -auto-all
+
+    if flag(small_base)
+       Build-Depends:   base >= 3, containers, filepath, random, directory
+    else
+       Build-Depends:   base < 3
+
+    Build-Depends:      fgl, Graphalyze >= 0.3, graphviz >= 2008.9.20,
+                        Cabal < 1.5, haskell-src-exts
+}
