RNAFoldProgs 0.0.0.1 → 0.0.0.2

raw patch · 1 files changed

+13/−10 lines, 1 filesdep ~Biobasedep ~BiobaseViennadep ~PrimitiveArray

Dependency ranges changed: Biobase, BiobaseVienna, PrimitiveArray, RNAFold, cmdargs, split

Files

• RNAFoldProgs.cabal +13/−10

@@ -1,5 +1,5 @@ name:           RNAFoldProgs-version:        0.0.0.1+version:        0.0.0.2 author:         Christian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al. (ViennaRNA package) maintainer:     choener@tbi.univie.ac.at copyright:      Christian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al. (ViennaRNA package)@@ -21,11 +21,14 @@                 - Do not expect good runtimes with anything less than                   6.13.201008xx. The newest head produces an executable roughly                   20x faster than GHC 6.12.3.+                .                 - Bugs are likely present in this algorithm. If you find one,                   please send me a mail.+                .                 - One goal is to get the vector library to optimise the loops                   (fold's) in such a way as to get performance close to the                   ViennaRNA package. Right now, we are about 15x slower.+                .                 - Works well with -Odph, -fllvm (llvm is about 70% faster than                   -fasm) @@ -33,12 +36,12 @@   build-depends:     base >=4 && <5, -    cmdargs,+    cmdargs ==0.6, -    Biobase,-    BiobaseVienna,-    PrimitiveArray,-    RNAFold+    Biobase >=0.0.2 && <0.0.3,+    BiobaseVienna >=0.0.2 && <0.0.3,+    PrimitiveArray >=0.0.2 && <0.0.3,+    RNAFold >=0.0.2 && <0.0.3    main-is:     RNAFold.hs@@ -51,11 +54,11 @@   build-depends:     base >=4 && <5, -    cmdargs,-    split,+    cmdargs ==0.6,+    split >=0.0.2.1, -    Biobase,-    RNAFold+    Biobase >=0.0.2 && <0.0.3,+    RNAFold >=0.0.2 && <0.0.3    main-is:     RNAEval.hs