HsHTSLib 1.9.0 → 1.9.0.1

raw patch · 2 files changed

+15/−3 lines, 2 files

Files

• HsHTSLib.cabal +1/−1
• src/Bio/HTS/Internal.chs +14/−2

@@ -1,5 +1,5 @@ name:                HsHTSLib-version:             1.9.0+version:             1.9.0.1 synopsis:            Bindings to htslib. description:         This package provides bindings to htslib, a library                      for processing high throughput DNA sequencing data.

@@ -37,9 +37,21 @@ import Foreign.C.Types import Foreign.C.String import System.IO (IOMode(..))-        -#include "cbits/hs_htslib.c"+ #include "htslib/sam.h"++#c+BGZF* get_bgzf(htsFile *h);+char* get_header_text(bam_hdr_t *hdr);+uint32_t get_header_size(bam_hdr_t *hdr);+char* bam_chr(bam_hdr_t *h, int32_t i);+int bam_is_rev_(bam1_t *b);+void bam_get_seq_(bam1_t *b, char *res, uint32_t l);+int bam_get_qual_(bam1_t *b, char *res, uint32_t l);+void bam_get_cigar_(bam1_t *b, int *num, char *str, uint32_t l);+uint8_t* bam_get_aux_(bam1_t *b);+int bam_get_l_aux_(bam1_t *b);+#endc  -- | Opaque data representing the hts file. data HTSFile