Genbank 1.0.1 → 1.0.2

raw patch · 3 files changed

+29/−4 lines, 3 filesdep +Genbankdep +cmdargsdep ~basenew-component:exe:GenbankTestPVP ok

version bump matches the API change (PVP)

Dependencies added: Genbank, cmdargs

Dependency ranges changed: base

API changes (from Hackage documentation)

Files

• Genbank.cabal +6/−3
• GenbankTest.hs +20/−0
• README.md +3/−1

@@ -5,7 +5,7 @@ -- PVP summary:      +-+------- breaking API changes --                   | | +----- non-breaking API additions --                   | | | +--- code changes with no API change-version:             1.0.1+version:             1.0.2 synopsis:            Libary for processing the NCBI genbank format description:         Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format.                      .@@ -42,8 +42,8 @@  source-repository this   type:     git-  location: https://github.com/eggzilla/Genbank/tree/1.0.1-  tag:      v1.0.1+  location: https://github.com/eggzilla/Genbank/tree/1.0.2+  tag:      1.0.2  library   -- Modules exported by the library.@@ -55,3 +55,6 @@   -- Directories containing source files.   hs-source-dirs:      src   +executable GenbankTest+  main-is:          GenbankTest.hs+  build-depends:    base >= 4 && <= 5, cmdargs, Genbank

@@ -0,0 +1,20 @@+-- | Parser test script+--   read from file and directly print parsing output++module Main where+    +import System.Environment (getArgs)+import System.IO+import Data.List+import Bio.GenbankTools+import Bio.GenbankParser  +import Data.Either+    +main = do+  args <- getArgs+  let input_file = (head args)+  let output_file = (last args)+                                      +  -- read Clustal outputfile+  parsedinput <- readGenbank input_file+  print parsedinput

@@ -1,4 +1,6 @@-#Genbank+#Genbank   [![Build Status](https://travis-ci.org/eggzilla/Genbank.svg?branch=master)](https://travis-ci.org/eggzilla/Genbank)+=========+ Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format. For more information on genbank refer to: