ClustalParser 1.1.1 → 1.1.2
raw patch · 4 files changed
+8/−4 lines, 4 filesPVP ok
version bump matches the API change (PVP)
API changes (from Hackage documentation)
Files
- ClustalParser.cabal +3/−3
- ClustalParserTest.hs +1/−1
- changelog +2/−0
- src/Bio/ClustalParser.hs +2/−0
ClustalParser.cabal view
@@ -5,7 +5,7 @@ -- PVP summary: +-+------- breaking API changes -- | | +----- non-breaking API additions -- | | | +--- code changes with no API change-version: 1.1.1+version: 1.1.2 synopsis: Libary for parsing Clustal tools output description: Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign .@@ -36,8 +36,8 @@ source-repository this type: git- location: https://github.com/eggzilla/ClustalParser/tree/1.1.1- tag: 1.1.1+ location: https://github.com/eggzilla/ClustalParser/tree/1.1.2+ tag: 1.1.2 library -- Modules exported by the library.
ClustalParserTest.hs view
@@ -9,7 +9,7 @@ args <- getArgs let input_file = (head args) -- read Clustal outputfile- parsedinput <- readClustalAlignment input_file+ parsedinput <- readStructuralClustalAlignment input_file --parsedinput <- readStructuralClustalAlignment input_file --print (entrySequenceIdentifier (head (structuralAlignmentEntries(fromRight parsedinput)))) print (fromRight parsedinput)
changelog view
@@ -1,4 +1,6 @@ -*-change-log-*-+1.1.2 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 3. July 2015+ * Included parsing of optional field in mlocarna clustal output 1.1.1 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 2. July 2015 * Added support for cmalign clustal output . 1.1.0 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 1. July 2015
src/Bio/ClustalParser.hs view
@@ -196,6 +196,8 @@ newline string "Compute pair probs ..." newline+ optional (try (string "Compute pairwise alignments ... "))+ optional (try newline) string "Perform progressive alignment ..." many1 newline return ""