diff --git a/ClustalParser.cabal b/ClustalParser.cabal
--- a/ClustalParser.cabal
+++ b/ClustalParser.cabal
@@ -5,15 +5,18 @@
 -- PVP summary:      +-+------- breaking API changes
 --                   | | +----- non-breaking API additions
 --                   | | | +--- code changes with no API change
-version:             1.1.0
+version:             1.1.1
 synopsis:            Libary for parsing Clustal tools output
-description:         Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna
+description:         Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign
                      .
-                     For more information on clustal Tools refer to <http://www.clustal.org/>
+	             Clustal tools are multiple sequence alignment tools for biological sequence like DNA, RNA and Protein.
+                     For more information on clustal Tools refer to <http://www.clustal.org/>.
                      .
-                     ClustalW2 is a general purpose DNA or protein multiple sequence alignment program for three or more sequences.
+                     Mlocarna is a multiple sequence alignment tool for RNA sequences with secondary structure output. 
+                     For more information on mlocarna refer to <http://www.bioinf.uni-freiburg.de/Software/LocARNA/>.
                      .
-                     Clustal Omega is a new multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences.
+                     Cmalign is a multiple sequence alignment program based on RNA family models and produces
+                     ,among others, clustal output. It is part of infernal <http://infernal.janelia.org/>.
                      
 license:             GPL
 license-file:        LICENSE
@@ -33,8 +36,8 @@
 
 source-repository this
   type:     git
-  location: https://github.com/eggzilla/ClustalParser/tree/1.1.0
-  tag:      1.1.0
+  location: https://github.com/eggzilla/ClustalParser/tree/1.1.1
+  tag:      1.1.1
 
 library
   -- Modules exported by the library.
diff --git a/README.md b/README.md
--- a/README.md
+++ b/README.md
@@ -1,7 +1,7 @@
 ClustalParser [![Hackage](https://img.shields.io/hackage/v/ClustalParser.svg)](https://hackage.haskell.org/package/ClustalParser) [![Build Status](https://travis-ci.org/eggzilla/ClustalParser.svg)](https://travis-ci.org/eggzilla/ClustalParser)
 =============
 
-Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna
+Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign
 
 Clustal tools are multiple sequence alignment tools for biological sequences 
 like DNA, RNA and Protein.
@@ -9,7 +9,10 @@
 
 Mlocarna is a multiple sequence alignment tool for RNA sequences with
 secondary structure output. 
-For more information on molocarna refer to <http://www.clustal.org/>.
+For more information on mlocarna refer to <http://www.bioinf.uni-freiburg.de/Software/LocARNA/>.
+
+cmalign is a multiple sequence alignment program based on RNA family models and produces
+,among others, clustal output. It is part of infernal <http://infernal.janelia.org/>. 
 
 4 types of output are parsed
 
diff --git a/changelog b/changelog
--- a/changelog
+++ b/changelog
@@ -1,6 +1,8 @@
 -*-change-log-*-
+1.1.1 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 2. July 2015
+        * Added support for cmalign clustal output .
 1.1.0 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 1. July 2015
-        * Added Hspec test-suite for Parsing functions
+        * Added Hspec test-suite for parsing functions
 	* Added Show instances for ClustalAlignment and StructuralClustalAlignment
 1.0.3 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 19. April 2015
 	* Added Y (pyrimidine) and R (purine) to sequence characters
diff --git a/src/Bio/ClustalParser.hs b/src/Bio/ClustalParser.hs
--- a/src/Bio/ClustalParser.hs
+++ b/src/Bio/ClustalParser.hs
@@ -115,9 +115,7 @@
 genParserClustalAlignment :: GenParser Char st ClustalAlignment
 genParserClustalAlignment = do
   many1 (noneOf "\n")
-  newline
-  newline
-  newline
+  many1 newline
   alignmentSlices <- many1 (try genParserClustalAlignmentSlice)
   eof  
   return (mergealignmentSlices alignmentSlices)
@@ -152,7 +150,7 @@
 genParserClustalEntrySlice = do
   sliceIdentifier <- many1 (noneOf " ")
   spacer <- many1 (char ' ')
-  sliceSequence <- many1 (oneOf "SNYRUAGCT-")
+  sliceSequence <- many1 (oneOf ".SNYRUAGCT-uagct")
   newline
   return $ ClustalAlignmentEntrySlice sliceIdentifier sliceSequence (length spacer)
 
@@ -199,9 +197,7 @@
   string "Compute pair probs ..."
   newline
   string "Perform progressive alignment ..."
-  newline
-  newline
-  newline
+  many1 newline
   return ""
 
 mergeStructuralAlignmentSlices :: [StructuralClustalAlignmentSlice] -> String -> Double -> StructuralClustalAlignment
@@ -227,7 +223,7 @@
 genParserStructuralClustalEntrySlice = do
   sliceIdentifier <- many1 (noneOf " ")
   many1 (char ' ')
-  sliceSequence <- many1 (oneOf "SNYRUAGCT-")
+  sliceSequence <- many1 (oneOf ".SNYRUAGCT-uagtc")
   newline
   return $ StructuralClustalAlignmentEntrySlice (filter (/='\n') sliceIdentifier) sliceSequence