BiobaseXNA 0.7.0.1 → 0.7.0.2

raw patch · 3 files changed

+89/−14 lines, 3 filesdep ~csv

Dependency ranges changed: csv

Files

• Biobase/Codon.hs +73/−0
• BiobaseXNA.cabal +8/−14
• changelog +8/−0

@@ -0,0 +1,73 @@++-- | This module has the translation tables for the genetic code.++module Biobase.Codon where++import qualified Data.Map.Strict as M++codonTable = M.fromList+  [ ("aaa",'K')+  , ("aac",'N')+  , ("aag",'K')+  , ("aat",'N')+  , ("aca",'T')+  , ("acc",'T')+  , ("acg",'T')+  , ("act",'T')+  , ("aga",'R')+  , ("agc",'S')+  , ("agg",'R')+  , ("agt",'S')+  , ("ata",'I')+  , ("atc",'I')+  , ("atg",'M')+  , ("att",'I')+  , ("caa",'Q')+  , ("cac",'H')+  , ("cag",'Q')+  , ("cat",'H')+  , ("cca",'P')+  , ("ccc",'P')+  , ("ccg",'P')+  , ("cct",'P')+  , ("cga",'R')+  , ("cgc",'R')+  , ("cgg",'R')+  , ("cgt",'R')+  , ("cta",'L')+  , ("ctc",'L')+  , ("ctg",'L')+  , ("ctt",'L')+  , ("gaa",'E')+  , ("gac",'D')+  , ("gag",'E')+  , ("gat",'D')+  , ("gca",'A')+  , ("gcc",'A')+  , ("gcg",'A')+  , ("gct",'A')+  , ("gga",'G')+  , ("ggc",'G')+  , ("ggg",'G')+  , ("ggt",'G')+  , ("gta",'V')+  , ("gtc",'V')+  , ("gtg",'V')+  , ("gtt",'V')+  , ("taa",'/')+  , ("tac",'Y')+  , ("tag",'/')+  , ("tat",'Y')+  , ("tca",'S')+  , ("tcc",'S')+  , ("tcg",'S')+  , ("tct",'S')+  , ("tga",'/')+  , ("tgc",'C')+  , ("tgg",'W')+  , ("tgt",'C')+  , ("tta",'L')+  , ("ttc",'F')+  , ("ttg",'L')+  , ("ttt",'F')+  ]

@@ -1,5 +1,5 @@ name:           BiobaseXNA-version:        0.7.0.1+version:        0.7.0.2 author:         Christian Hoener zu Siederdissen maintainer:     choener@tbi.univie.ac.at homepage:       http://www.tbi.univie.ac.at/~choener/@@ -30,36 +30,30 @@                 Nucl. Acids Res. (2009)                 .                 <http://dx.crossref.org/10.1093%2Fnar%2Fgkp011>-                .-                .-                .-                new in 0.7-                .-                * updated to PrimitiveArray >= 0.5-                .-                new in 0.6.2.0-                .-                * Updated to PrimitiveArray >= 0.2.0.0 ++ extra-source-files:   sources/isostericity-matrices.csv   sources/isostericity-detailed.csv+  changelog  library   build-depends:     base >3 && <5,     bytestring     >= 0.10          ,     containers     >= 0.4           ,-    csv            == 0.1.2         ,+    csv            >= 0.1.2         ,     file-embed     >= 0.0.4.7       ,     primitive      >= 0.5           ,+    PrimitiveArray >= 0.5           ,     repa           >= 3.2           ,     text           >= 0.11          ,     tuple          >= 0.2           ,-    vector         >= 0.10          ,-    PrimitiveArray >= 0.5+    vector         >= 0.10    exposed-modules:+    Biobase.Codon     Biobase.Primary     Biobase.Primary.Bounds     Biobase.Primary.Hashed

@@ -0,0 +1,8 @@+0.7+    * updated to PrimitiveArray >= 0.5++    * added Codon table++0.6.2.0++    * Updated to PrimitiveArray >= 0.2.0.0