packages feed

BiobaseTurner 0.3.0.0 → 0.3.1.0

raw patch · 3 files changed

+4/−4 lines, 3 filesPVP: major bump suggested

API removals or changes: PVP suggests a major version bump

API changes (from Hackage documentation)

- Biobase.Turner: Turner2004Model :: !(Unboxed PP e) -> !(Unboxed PN e) -> !(Unboxed PN e) -> !(Vector e) -> !(Unboxed PNN e) -> !(Map ByteString e) -> !e -> !e -> !e -> !e -> !(Vector e) -> !e -> !(Unboxed PPNN e) -> !(Unboxed PPNNN e) -> !(Unboxed PPNNNN e) -> !(Unboxed PNN e) -> !(Unboxed PNN e) -> !(Unboxed PNN e) -> !(Vector e) -> !(Unboxed PNN e) -> !e -> !e -> !e -> !e -> !e -> !e -> !e -> !(Unboxed PNN e) -> !(Unboxed PP e) -> !(Unboxed PNN e) -> !(Unboxed PNN e) -> !e -> !e -> !e -> Turner2004Model e
+ Biobase.Turner: Turner2004Model :: !(Unboxed PP e) -> !(Unboxed PN e) -> !(Unboxed PN e) -> !(Vector e) -> !(Unboxed PNN e) -> !(Map Primary e) -> !e -> !e -> !e -> !e -> !(Vector e) -> !e -> !(Unboxed PPNN e) -> !(Unboxed PPNNN e) -> !(Unboxed PPNNNN e) -> !(Unboxed PNN e) -> !(Unboxed PNN e) -> !(Unboxed PNN e) -> !(Vector e) -> !(Unboxed PNN e) -> !e -> !e -> !e -> !e -> !e -> !e -> !e -> !(Unboxed PNN e) -> !(Unboxed PP e) -> !(Unboxed PNN e) -> !(Unboxed PNN e) -> !e -> !e -> !e -> Turner2004Model e
- Biobase.Turner: _hairpinLookup :: Turner2004Model e -> !(Map ByteString e)
+ Biobase.Turner: _hairpinLookup :: Turner2004Model e -> !(Map Primary e)
- Biobase.Turner: hairpinLookup :: Lens' (Turner2004Model e_a72r) (Map ByteString e_a72r)
+ Biobase.Turner: hairpinLookup :: Lens' (Turner2004Model e_a72r) (Map Primary e_a72r)
- Biobase.Turner.Import: tabFromFile :: FilePath -> IO [(ByteString, Energy)]
+ Biobase.Turner.Import: tabFromFile :: FilePath -> IO [(Primary, Energy)]

Files

Biobase/Turner.hs view
@@ -60,7 +60,7 @@   , _dangle5            :: !(Unboxed PN e)   , _hairpinL           :: !(VU.Vector e)   , _hairpinMM          :: !(Unboxed PNN e)-  , _hairpinLookup      :: !(M.Map ByteString e)+  , _hairpinLookup      :: !(M.Map Primary e)   , _hairpinGGG         :: !e   , _hairpinCslope      :: !e   , _hairpinCintercept  :: !e
Biobase/Turner/Import.hs view
@@ -238,8 +238,8 @@  -- | -tabFromFile :: FilePath -> IO [(ByteString,Energy)]-tabFromFile fp = runResourceT $ sourceFile fp $$ parseTabulated+tabFromFile :: FilePath -> IO [(Primary,Energy)]+tabFromFile fp = fmap (L.map (first mkPrimary)) . runResourceT $ sourceFile fp $$ parseTabulated  allEq [] = True allEq (x:xs) = L.all (==x) xs
BiobaseTurner.cabal view
@@ -1,5 +1,5 @@ name:           BiobaseTurner-version:        0.3.0.0+version:        0.3.1.0 author:         Christian Hoener zu Siederdissen maintainer:     choener@tbi.univie.ac.at homepage:       http://www.tbi.univie.ac.at/~choener/