diff --git a/BioHMM.cabal b/BioHMM.cabal
--- a/BioHMM.cabal
+++ b/BioHMM.cabal
@@ -1,5 +1,5 @@
 name:                BioHMM
-version:             1.1.8
+version:             1.2.0
 synopsis:            Libary for Hidden Markov Models in HMMER3 format. 
 description:         Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.  
 license:             GPL-3
@@ -20,8 +20,8 @@
 
 source-repository this
   type:     git
-  location: https://github.com/eggzilla/BioHMM/tree/1.1.8
-  tag:      1.1.8
+  location: https://github.com/eggzilla/BioHMM/tree/1.2.0
+  tag:      1.2.0
 
 library
   -- Modules exported by the library.
diff --git a/changelog b/changelog
--- a/changelog
+++ b/changelog
@@ -1,4 +1,9 @@
 -*-change-log-*-
+1.2.0 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 9. June 2017
+	* Fixed a bug where comparison nodes from the other model were used
+	* Fixed alignment width
+1.1.9 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 9. June 2017
+	* Changed HMMCompare parsing for more similarity to CMCompare parsing
 1.1.8 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 8. June 2017
 	* Minimal and simple visualisation now also support line mode
 	* Added show instance for HMMCompareResult
diff --git a/src/Bio/HMMCompareResult.hs b/src/Bio/HMMCompareResult.hs
--- a/src/Bio/HMMCompareResult.hs
+++ b/src/Bio/HMMCompareResult.hs
@@ -72,7 +72,6 @@
     _ <- char '['
     nodes2 <- many1 parseMatchedNodes
     _ <- char ']'
-    newline
     return $ HMMCompareResult name1 name2 (readDouble score1) (readDouble score2) linkseq nodes1 nodes2
 
 -- | Parse indices of matched nodes between models as integers
diff --git a/src/Bio/HMMDraw.hs b/src/Bio/HMMDraw.hs
--- a/src/Bio/HMMDraw.hs
+++ b/src/Bio/HMMDraw.hs
@@ -81,7 +81,7 @@
            simpleNodesHeader = alignTL (vcat' with { _sep = 5 }  [modelHeader,simpleNodes])
            verboseNodesHeader = alignTL (vcat' with { _sep = 5 }  [modelHeader,verboseNodes])
            modelHeader = makeModelHeader (HM.name model) modelColor nameColorVector
-           alignmentDiagram = drawStockholmLinesComparisonLabel entryNumberCutoff maxWidth comparisonNodeLabels currentNodes aln              
+           alignmentDiagram = drawStockholmLinesComparisonLabel entryNumberCutoff (200 :: Double) comparisonNodeLabels currentNodes aln              
 
 drawStockholmLinesComparisonLabel :: Int -> Double -> V.Vector (Int,V.Vector (Colour Double)) -> V.Vector HM.HMMER3Node -> Maybe S.StockholmAlignment -> Maybe (QDiagram Cairo V2 Double Any)
 drawStockholmLinesComparisonLabel entryNumberCutoff maxWidth comparisonNodeLabels nodes maybeAln
@@ -408,9 +408,9 @@
 getComparisonNodeLabels comparsionResults colorVector model = comparisonNodeLabels
    where modelName = HM.name model
          relevantComparisons1 = filter ((modelName==) . model1Name) comparsionResults
-         modelNodeInterval1 = map (\a -> (model2Name a,model2matchednodes a)) relevantComparisons1
+         modelNodeInterval1 = map (\a -> (model2Name a,model1matchednodes a)) relevantComparisons1
          relevantComparisons2 = filter ((modelName==) . model2Name) comparsionResults
-         modelNodeInterval2 = map (\a -> (model1Name a,model1matchednodes a)) relevantComparisons2
+         modelNodeInterval2 = map (\a -> (model1Name a,model2matchednodes a)) relevantComparisons2
          modelNodeIntervals =  V.fromList (modelNodeInterval1 ++ modelNodeInterval2)
          colorNodeIntervals = V.map (modelToColor colorVector) modelNodeIntervals
          nodeNumber = V.length (HM.nodes model)