BioHMM 1.0.2 → 1.0.3

raw patch · 3 files changed

+9/−7 lines, 3 filesdep ~diagrams-cairodep ~diagrams-libPVP ok

version bump matches the API change (PVP)

Dependency ranges changed: diagrams-cairo, diagrams-lib

API changes (from Hackage documentation)

Files

• BioHMM.cabal +5/−5
• changelog +2/−0
• src/Bio/HMMDraw.hs +2/−2

@@ -1,5 +1,5 @@ name:                BioHMM-version:             1.0.2+version:             1.0.3 synopsis:            Libary for Hidden Markov Models in HMMER3 format.  description:         Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.   license:             GPL-3@@ -16,12 +16,12 @@  source-repository head   type:     git-  location: https://github.com/eggzilla/HMM+  location: https://github.com/eggzilla/BioHMM  source-repository this   type:     git-  location: https://github.com/eggzilla/HMM/tree/1.0.2-  tag:      1.0.2+  location: https://github.com/eggzilla/BioHMM/tree/1.0.3+  tag:      1.0.3  library   -- Modules exported by the library.@@ -34,7 +34,7 @@   ghc-options:         -Wall -O2 -fno-warn-unused-do-bind    -- Other library packages from which modules are imported.-  build-depends:       base >=4.5 && <5, parsec>=3.1.9, diagrams-lib>=1.4.0.1, text, vector, ParsecTools, diagrams-cairo>=1.4, filepath, colour, directory, either-unwrap, SVGFonts >= 1.6, StockholmAlignment+  build-depends:       base >=4.5 && <5, parsec>=3.1.9, diagrams-lib>=1.3, text, vector, ParsecTools, diagrams-cairo>=1.3, filepath, colour, directory, either-unwrap, SVGFonts >= 1.6, StockholmAlignment      -- Directories containing source files.   hs-source-dirs:      src

@@ -1,4 +1,6 @@ -*-change-log-*-+1.0.3 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 29. December 2016+        * Bugfix - reverted broken setting of svgsize 1.0.2 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 29. December 2016         * Added size scaling to HMM drawing functions 1.0.1 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 22. December 2016

@@ -98,7 +98,7 @@            nodeNumberPerRow = floor (maxWidth / nodeWidth - 2)            nodesIntervals = makeNodeIntervals nodeNumberPerRow nodeNumber            verboseNodes = vcat' with { _sep = 3 } (V.toList (V.map (drawDetailedNodeRow alphabetSymbols emissiontype boxlength nodeNumber currentNodes comparisonNodeLabels) nodesIntervals))-           verboseNodesAlignment = alignTL (vcat' with { _sep = 5 }  [modelHeader,verboseNodes,alignmentDiagram])+           verboseNodesAlignment = (alignTL (vcat' with { _sep = 5 }  [modelHeader,verboseNodes,alignmentDiagram]))             modelHeader = makeModelHeader (HM.name model) modelColor            alignmentDiagram = if isJust aln then drawStockholmLines entriesNumberCutoff maxWidth nodeAlignmentColIndices comparisonNodeLabels (fromJust aln) else mempty            --connectedNodes = makeConnections boxlength currentNodes@@ -325,7 +325,7 @@ bar emission = (rect (4 * emission) 1 # lw 0 # fc black # translate (r2 (negate (2 - (4 * emission/2)),0)) <> rect 4 1 # lw 0.03 )  svgsize :: SizeSpec V2 Double-svgsize = mkSizeSpec2D (Just 2) (Just 2)+svgsize = mkSizeSpec2D Nothing Nothing  -- | Check for available cairo output formats diagramName :: String -> String -> Either String String